Prupe.1G176800_v2.0.a1

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014357
Physical Location & Seq
Forward (+)
15057123 .. 15060329
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G176800.1

Sequence Viewer

Length: 1638 bp
ATGGAGTTGTCTTTGCCTTCCTCATTGCAAAGGAATTGGCCCATCAGTTCTCTCAATTCCAGCTTCCTTCCTCACTATCCTCCTTGCTTATTAGGTATGGTCAAGAAGAATTGTAAAATCAACAAGATCTCACAAAATATCTCTTTTTCAATATCGTGCTCATCTGTCAAAACTGTCCGTTGTCCTTCACTGGACAGACATGTCGTGAAGCAGAACAAGATACGTTTTGTCCAAAAGCTACAAACACTGCTCCTTTCTAAACCAAAATGCTATATTCCAATTCATATTCTTTATAAATGTCGATCCTATCTTTCCCTATCAAAGCCACGGTCCATCCTCTCAATGATCCATCGTTACCCTACCATTTTCGAACTCTTCTCAATCCCAACACCTCCCTTGCCAGTCAACGCAACCAAGTCATTATTACAACTCTGTGTCCGTCTAACCCCAGCTGCAGCAGCCCTTGCTGCTCAGGAATTAAGTCTTAAATCAGCCATCTCTGACTCTTTGGCCGCCAAACTCCAGAAACTTCTTATGCTCTCGTCTCATCACCGGCTACTTCTGTCAAAGTTGGTTCATCTAGCTCCAGATCTTGGTCTTCCCCCTAATTTCCGCTCTCACTTGGCAAAGCCTTTATCATCTCCTAAAGTTCAATCGCGTGAGCTAATAGTAGACAGACCTTTGAAGTTTAACCAGTTGACACTTCGAAAGGGGCTAAATTTGAAGAGGCGTCACCAAGATTTTTTGCTCAAGTTTAAAGAAATTCCAGATGTGTGCCCGTACAATACCCCTGTCTCGGACTTGCCTAAAGAGTCAATTGGGGCAGAGAAGAGAGCTTGTTTGGTGGTGAGAGAAGTGCTAGGAATGATGGTTGAAAAGAGGACTTTGATAGACCACTTGACTCATTTTAGGAAAGAGTTTGTGCTGCCAAACAAATTGAGAGGGATGATCATGCGGCACCCAGAGTTATTCTACGTGAGCTTGAAAGGGCAGAGAGATTCTGTGTTCTTGGTGGAGGGTTTTGATGATAAGGGTGCGCTGTTGGAGAAGAAAGAGACTTTGGTGATAAAGGAAAAGTTGATGGAGTTGGTCAGTGAAAGCAAGAGACTAAGAAGAGAGAGGAGGAACGCTCGCATTAACAACACTGAGATTGGTGACGCTAGTGATGAGTTTGAGTATGATGACAATGATGATGATTATGATGATGGTTTTCAGAGTTTGTTTGAGTCTGAAGATTTGTATTTGGATGATGATGGTGATGAGAAGGTTGAGACAGTGGACTACAGGGAGAATGGGCAGTTTTGGACTGTTGATGCTCATTCTGTTCTTGGTGGCTGGAAGCAACCTATGGAACCTTGGTTTAATGGAGAAGATGGGGAGCAATGTGGGGTGGAGCAGCTAGCCCTGCAGCAATATGCTGGGGAAGGAATACTGACAGATTTATGTAGTGAAAAAGAGCCTTATTTTGATGGCATGGCTGAGGAGATCCTCATCACTTCATGGGAATTTCATGAGGGAATAGCATGTAGTGTAGTTGATTGTGGCCGGCGTTTGCTTCTACAATTAGAAGATAAATATTTGCTTAATGCAGCTTTCACCTTTGAAGATGGTTGTGTACCATCTAAAGTAGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

546

Amino Acids

62.14

Weight (kDa)

6.92

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62990
fragaria_vesca FvH4_4g12420
malus_domestica MD04G1026700.v1.1 MD04G1027400.v1.1
prunus_persica Prupe.1G176800_v2.0.a1
pyrus_communis pycom04g02270
rosa_chinensis RchiOBHm_Chr4g0410651
rosa_laevigata RLG00000008409
rosa_multiflora Rmu_co8404567.1_g000001 Rmu_sc0006144.1_g000002
rosa_roxburghii Rroxscaffold_5G00355430
rosa_rugosa Rorug04G0111800
rosa_samantha Rh4AG162100 Rh4BG161100 Rh4CG175100 Rh4DG157900
rosa_wichuraiana Rw4G013520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AasI GACNNNNNNGTC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 957
AccB7I CCANNNNNTGG 1 cut(s) 593
AccBSI CCGCTC 1 cut(s) 615
AccI GTMKAC 1 cut(s) 672
AccII CGCG 1 cut(s) 658
AciI CCGC 3 cut(s) 513, 613, 955
AclWI GGATC 3 cut(s) 297, 340, 1480
AcoI YGGCCR 2 cut(s) 510, 1543
AcsI RAATTY 3 cut(s) 718, 762, 1505
AcuI CTGAAG 1 cut(s) 1251
AcyI GRCGYC 1 cut(s) 730
AfaI GTAC 2 cut(s) 782, 1617
AfiI CCNNNNNNNGG 2 cut(s) 593, 796
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 7 cut(s) 150, 653, 685, 724, 875, 985, 1604
AjuI GAANNNNNNNTTGG 2 cut(s) 1043, 1075
AluBI AGCT 9 cut(s) 63, 238, 452, 584, 664, 836, 981, 1399, 1592
AluI AGCT 9 cut(s) 63, 238, 452, 584, 664, 836, 981, 1399, 1592
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 5 cut(s) 549, 799, 1049, 1099, 1265
AlwI GGATC 3 cut(s) 297, 340, 1480
AoxI GGCC 3 cut(s) 38, 510, 1543
ApeKI GCWGC 8 cut(s) 452, 455, 458, 467, 925, 1396, 1408, 1589
ApoI RAATTY 3 cut(s) 718, 762, 1505
ArsI GACNNNNNNTTYG 2 cut(s) 314, 346
AspLEI GCGC 1 cut(s) 1039
AspS9I GGNCC 2 cut(s) 39, 330
AsuHPI GGTGA 7 cut(s) 542, 725, 859, 1075, 1166, 1268, 1588
AsuII TTCGAA 2 cut(s) 369, 706
AsuNHI GCTAGC 1 cut(s) 1399
AvaII GGWCC 1 cut(s) 330
BaeGI GKGCMC 1 cut(s) 779
BanI GGYRCC 1 cut(s) 957
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 161
BbvCI CCTCAGC 1 cut(s) 1479
BbvI GCAGC 8 cut(s) 439, 454, 467, 470, 912, 1408, 1420, 1601
BclI TGATCA 1 cut(s) 948
BcoDI GTCTC 5 cut(s) 549, 799, 1049, 1099, 1265
BfaI CTAG 4 cut(s) 581, 860, 1161, 1400
BfmI CTRYAG 3 cut(s) 453, 1282, 1406
BglII AGATCT 2 cut(s) 126, 589
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 2 cut(s) 39, 330
BmiI GGNNCC 2 cut(s) 959, 1353
BmsI GCATC 1 cut(s) 1303
BmtI GCTAGC 1 cut(s) 1403
BpiI GAAGAC 1 cut(s) 590
BplI GAGNNNNNCTC 2 cut(s) 1114, 1146
BpmI CTGGAG 2 cut(s) 506, 570
Bpu10I CCTNAGC 2 cut(s) 471, 1479
Bpu14I TTCGAA 2 cut(s) 369, 706
BpuEI CTTGAG 1 cut(s) 734
BsaAI YACGTR 1 cut(s) 976
BsaBI GATNNNNATC 1 cut(s) 1490
BsaHI GRCGYC 1 cut(s) 730
BsaJI CCNNGG 2 cut(s) 326, 1355
Bsc4I CCNNNNNNNGG 2 cut(s) 593, 796
Bse118I RCCGGY 2 cut(s) 552, 1545
Bse1I ACTGG 3 cut(s) 195, 401, 694
Bse3DI GCAATG 2 cut(s) 23, 1388
Bse8I GATNNNNATC 1 cut(s) 1490
BseDI CCNNGG 2 cut(s) 326, 1355
BseGI GGATG 3 cut(s) 333, 951, 1252
BseJI GATNNNNATC 1 cut(s) 1490
BseLI CCNNNNNNNGG 2 cut(s) 593, 796
BseMI GCAATG 2 cut(s) 23, 1388
BseMII CTCAG 3 cut(s) 485, 1137, 1470
BseNI ACTGG 3 cut(s) 195, 401, 694
BseRI GAGGAG 2 cut(s) 1135, 1496
BseSI GKGCMC 1 cut(s) 779
BseXI GCAGC 8 cut(s) 439, 454, 467, 470, 912, 1408, 1420, 1601
BseYI CCCAGC 2 cut(s) 448, 1418
Bsh1236I CGCG 1 cut(s) 658
BshFI GGCC 3 cut(s) 40, 512, 1545
BshNI GGYRCC 1 cut(s) 957
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 2 cut(s) 553, 1546
BslI CCNNNNNNNGG 2 cut(s) 593, 796
BsmAI GTCTC 5 cut(s) 549, 799, 1049, 1099, 1265
BsmBI CGTCTC 1 cut(s) 549
BsnI GGCC 3 cut(s) 40, 512, 1545
Bsp119I TTCGAA 2 cut(s) 369, 706
Bsp1286I GDGCHC 2 cut(s) 161, 779
Bsp143I GATC 6 cut(s) 126, 302, 345, 589, 948, 1485
BspACI CCGC 3 cut(s) 513, 613, 955
BspANI GGCC 3 cut(s) 40, 512, 1545
BspCNI CTCAG 3 cut(s) 484, 1138, 1471
BspFNI CGCG 1 cut(s) 658
BspHI TCATGA 1 cut(s) 1510
BspLI GGNNCC 2 cut(s) 959, 1353
BspMAI CTGCAG 2 cut(s) 457, 1410
BspOI GCTAGC 1 cut(s) 1403
BspPI GGATC 3 cut(s) 297, 340, 1480
BspT104I TTCGAA 2 cut(s) 369, 706
BspT107I GGYRCC 1 cut(s) 957
BsrBI CCGCTC 1 cut(s) 615
BsrDI GCAATG 2 cut(s) 23, 1388
BsrFI RCCGGY 2 cut(s) 552, 1545
BsrI ACTGG 3 cut(s) 195, 401, 694
BssAI RCCGGY 2 cut(s) 552, 1545
BssECI CCNNGG 2 cut(s) 326, 1355
BssMI GATC 6 cut(s) 126, 302, 345, 589, 948, 1485
BssNI GRCGYC 1 cut(s) 730
BssT1I CCWWGG 1 cut(s) 1355
Bst4CI ACNGT 4 cut(s) 175, 330, 1276, 1309
Bst6I CTCTTC 4 cut(s) 380, 719, 824, 1108
BstACI GRCGYC 1 cut(s) 730
BstAPI GCANNNNNTGC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 976
BstBI TTCGAA 2 cut(s) 369, 706
BstC8I GCNNGC 3 cut(s) 1132, 1401, 1547
BstDEI CTNAG 4 cut(s) 471, 1109, 1146, 1479
BstDSI CCRYGG 1 cut(s) 326
BstF5I GGATG 3 cut(s) 333, 951, 1252
BstFNI CGCG 1 cut(s) 658
BstHHI GCGC 1 cut(s) 1039
BstKTI GATC 6 cut(s) 129, 305, 348, 592, 951, 1488
BstMAI GTCTC 5 cut(s) 549, 799, 1049, 1099, 1265
BstMBI GATC 6 cut(s) 126, 302, 345, 589, 948, 1485
BstMWI GCNNNNNNNGC 4 cut(s) 458, 464, 467, 1405
BstNSI RCATGY 2 cut(s) 203, 1527
BstSFI CTRYAG 3 cut(s) 453, 1282, 1406
BstSLI GKGCMC 1 cut(s) 779
BstUI CGCG 1 cut(s) 658
BstV1I GCAGC 8 cut(s) 439, 454, 467, 470, 912, 1408, 1420, 1601
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 3 cut(s) 126, 589, 1485
BstYI RGATCY 3 cut(s) 126, 589, 1485
BsuRI GGCC 3 cut(s) 40, 512, 1545
BtgI CCRYGG 1 cut(s) 326
BtsCI GGATG 3 cut(s) 333, 951, 1252
BtsI GCAGTG 1 cut(s) 245
BtsIMutI CAGTG 5 cut(s) 188, 245, 1099, 1143, 1281
Cac8I GCNNGC 3 cut(s) 1132, 1401, 1547
CciI TCATGA 1 cut(s) 1510
CfoI GCGC 1 cut(s) 1039
Cfr10I RCCGGY 2 cut(s) 552, 1545
Cfr13I GGNCC 2 cut(s) 39, 330
CseI GACGC 2 cut(s) 719, 1166
Csp6I GTAC 2 cut(s) 781, 1616
CviAII CATG 6 cut(s) 200, 952, 1474, 1500, 1511, 1524
CviQI GTAC 2 cut(s) 781, 1616
DdeI CTNAG 4 cut(s) 471, 1109, 1146, 1479
DpnI GATC 6 cut(s) 128, 304, 347, 591, 950, 1487
DpnII GATC 6 cut(s) 126, 302, 345, 589, 948, 1485
DraI TTTAAA 1 cut(s) 757
DrdI GACNNNNNNGTC 1 cut(s) 200
DseDI GACNNNNNNGTC 1 cut(s) 200
EaeI YGGCCR 2 cut(s) 510, 1543
Eam1104I CTCTTC 4 cut(s) 380, 719, 824, 1108
EarI CTCTTC 4 cut(s) 380, 719, 824, 1108
Eco130I CCWWGG 1 cut(s) 1355
Eco47I GGWCC 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 1251
EcoT14I CCWWGG 1 cut(s) 1355
ErhI CCWWGG 1 cut(s) 1355
Esp3I CGTCTC 1 cut(s) 549
FaeI CATG 6 cut(s) 203, 955, 1477, 1503, 1514, 1527
FatI CATG 6 cut(s) 199, 951, 1473, 1499, 1510, 1523
FbaI TGATCA 1 cut(s) 948
FblI GTMKAC 1 cut(s) 672
FokI GGATG 3 cut(s) 320, 958, 1259
FspBI CTAG 4 cut(s) 581, 860, 1161, 1400
GlaI GCGC 1 cut(s) 1038
GsaI CCCAGC 2 cut(s) 452, 1422
GsuI CTGGAG 2 cut(s) 506, 570
HaeIII GGCC 3 cut(s) 40, 512, 1545
HapII CCGG 2 cut(s) 553, 1546
HgaI GACGC 2 cut(s) 719, 1166
HhaI GCGC 1 cut(s) 1039
Hin1I GRCGYC 1 cut(s) 730
Hin1II CATG 6 cut(s) 203, 955, 1477, 1503, 1514, 1527
Hin6I GCGC 1 cut(s) 1037
HinP1I GCGC 1 cut(s) 1037
HincII GTYRAC 2 cut(s) 406, 699
HindII GTYRAC 2 cut(s) 406, 699
HinfI GANTC 5 cut(s) 503, 812, 901, 998, 1226
HpaII CCGG 2 cut(s) 553, 1546
HphI GGTGA 7 cut(s) 542, 725, 859, 1075, 1166, 1268, 1588
Hpy166II GTNNAC 5 cut(s) 406, 673, 699, 1279, 1616
Hpy188I TCNGA 4 cut(s) 502, 799, 1215, 1231
Hpy188III TCNNGA 7 cut(s) 103, 205, 473, 523, 587, 767, 1511
Hpy8I GTNNAC 5 cut(s) 406, 673, 699, 1279, 1616
HpyAV CCTTC 5 cut(s) 27, 77, 195, 1258, 1418
HpyCH4III ACNGT 4 cut(s) 175, 330, 1276, 1309
HpyCH4IV ACGT 2 cut(s) 223, 975
HpyCH4V TGCA 4 cut(s) 28, 455, 1408, 1589
HpyF10VI GCNNNNNNNGC 4 cut(s) 458, 464, 467, 1405
HpyF3I CTNAG 4 cut(s) 471, 1109, 1146, 1479
HpySE526I ACGT 2 cut(s) 223, 975
Hsp92I GRCGYC 1 cut(s) 730
Hsp92II CATG 6 cut(s) 203, 955, 1477, 1503, 1514, 1527
HspAI GCGC 1 cut(s) 1037
KroI GCCGGC 1 cut(s) 1545
KroNI GCCGGC 1 cut(s) 1547
Ksp22I TGATCA 1 cut(s) 948
Kzo9I GATC 6 cut(s) 126, 302, 345, 589, 948, 1485
LmnI GCTCC 4 cut(s) 255, 589, 1378, 1393
Lsp1109I GCAGC 8 cut(s) 439, 454, 467, 470, 912, 1408, 1420, 1601
LweI GCATC 1 cut(s) 1303
MaeI CTAG 4 cut(s) 581, 860, 1161, 1400
MaeII ACGT 2 cut(s) 223, 975
MaeIII GTNAC 3 cut(s) 353, 731, 1154
MalI GATC 6 cut(s) 128, 304, 347, 591, 950, 1487
MbiI CCGCTC 1 cut(s) 615
MboI GATC 6 cut(s) 126, 302, 345, 589, 948, 1485
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 3 cut(s) 126, 589, 1485
MhlI GDGCHC 2 cut(s) 161, 779
MlyI GAGTC 4 cut(s) 497, 821, 895, 1235
MmeI TCCRAC 1 cut(s) 1023
MroNI GCCGGC 1 cut(s) 1545
MseI TTAA 8 cut(s) 479, 486, 690, 756, 1137, 1362, 1584, 1636
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 2 cut(s) 553, 1546
MunI CAATTG 1 cut(s) 816
MvnI CGCG 1 cut(s) 658
MwoI GCNNNNNNNGC 4 cut(s) 458, 464, 467, 1405
NaeI GCCGGC 1 cut(s) 1547
NdeII GATC 6 cut(s) 126, 302, 345, 589, 948, 1485
NgoMIV GCCGGC 1 cut(s) 1545
NheI GCTAGC 1 cut(s) 1399
NlaIII CATG 6 cut(s) 203, 955, 1477, 1503, 1514, 1527
NlaIV GGNNCC 2 cut(s) 959, 1353
NmuCI GTSAC 2 cut(s) 731, 1154
NspI RCATGY 2 cut(s) 203, 1527
NspV TTCGAA 2 cut(s) 369, 706
PagI TCATGA 1 cut(s) 1510
PciI ACATGT 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 1547
PfeI GAWTC 1 cut(s) 998
PflMI CCANNNNNTGG 1 cut(s) 593
PleI GAGTC 4 cut(s) 497, 820, 895, 1234
PpsI GAGTC 4 cut(s) 497, 820, 895, 1234
Ppu21I YACGTR 1 cut(s) 976
PscI ACATGT 1 cut(s) 199
PsiI TTATAA 1 cut(s) 294
PspFI CCCAGC 2 cut(s) 448, 1418
PspN4I GGNNCC 2 cut(s) 959, 1353
PspPI GGNCC 2 cut(s) 39, 330
PstI CTGCAG 2 cut(s) 457, 1410
PsuI RGATCY 3 cut(s) 126, 589, 1485
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 782, 1617
RsaNI GTAC 2 cut(s) 781, 1616
SaqAI TTAA 8 cut(s) 479, 486, 690, 756, 1137, 1362, 1584, 1636
Sau3AI GATC 6 cut(s) 126, 302, 345, 589, 948, 1485
Sau96I GGNCC 2 cut(s) 39, 330
SchI GAGTC 4 cut(s) 497, 821, 895, 1235
SduI GDGCHC 2 cut(s) 161, 779
SfaNI GCATC 1 cut(s) 1303
SfcI CTRYAG 3 cut(s) 453, 1282, 1406
SfuI TTCGAA 2 cut(s) 369, 706
SinI GGWCC 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
SsiI CCGC 3 cut(s) 513, 613, 955
SspI AATATT 1 cut(s) 1577
SspMI CTAG 4 cut(s) 581, 860, 1161, 1400
StyI CCWWGG 1 cut(s) 1355
TaaI ACNGT 4 cut(s) 175, 330, 1276, 1309
TaiI ACGT 2 cut(s) 226, 978
TaqI TCGA 3 cut(s) 301, 369, 706
TauI GCSGC 2 cut(s) 515, 958
TfiI GAWTC 1 cut(s) 998
Tru1I TTAA 8 cut(s) 479, 486, 690, 756, 1137, 1362, 1584, 1636
Tru9I TTAA 8 cut(s) 479, 486, 690, 756, 1137, 1362, 1584, 1636
TscAI CASTG 5 cut(s) 195, 252, 1099, 1150, 1281
TseFI GTSAC 2 cut(s) 731, 1154
TseI GCWGC 8 cut(s) 452, 455, 458, 467, 925, 1396, 1408, 1589
Tsp45I GTSAC 2 cut(s) 731, 1154
TspDTI ATGAA 4 cut(s) 272, 566, 1488, 1499
TspGWI ACGGA 2 cut(s) 167, 428
TspRI CASTG 5 cut(s) 195, 252, 1099, 1150, 1281
Van91I CCANNNNNTGG 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 330
XapI RAATTY 3 cut(s) 718, 762, 1505
XceI RCATGY 2 cut(s) 203, 1527
XmiI GTMKAC 1 cut(s) 672
XspI CTAG 4 cut(s) 581, 860, 1161, 1400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.