Rh4BG161100

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014357
Physical Location & Seq
Reverse (-)
29045767 .. 29047233
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG161100.1

Sequence Viewer

Length: 1467 bp
ATGGGGGCGTTGTCCTTGCCTTTCTCATCGCAAAACTTCTTGCCCATTACTTCTGTCAGTTCTGACTTCTTTCCTTGGAATCCTCGCTTATTTGAAGTCAGCAGAAATCATAAGAACAACAGTAAAACCAAAAATATCTCTTTTCCTGTTTCTTGCTCATCTGTCAAAACTGTGCGTAGTCCTTCACTAGACAGGCATGTTGTGAAACAGAACAAGATACGGTTTGTCCTGAAGTTACAAACACTGCTCCTTTCCAAACCAAGATGCTATATTCCGCTTCAGATTCTTAATAAATGTCGATCCTACCTTTCCCTATCAAAGCCCCGGTCCATCCTTTCAATGATCCATCGTTACCCTACCATTTTTGAAGTCTTCTCAATACCAACAGCACCCATGCCATTCAATGCGTCCAAGTCATTATCACAACTCTGTGTCCGTCTAACCCCAGCTGCAGCAGCGCTTGCTGTGCAGGAATCGACTCTAAAATCAGCCATCTCTGACTCCTTGGCTACCAAACTCCAGAAACTTCTTATGCTTTCTTCTCATCACCGGCTAGTTCTGTCAAAGTTGGTTCACCTTGGTCCAGATCTTGGTCTTCACCCTAATTTTCGCTCTCGGCTCTGCAATGACCATCCAGAAAAATTCAAGACTATTGATACCTCCTACGGGCGTGCACTTGAGCTTGTATCCTGGGACCAAGACCTGGCAAAACCTTTACCGCCTCCAGAAGTTCAATCGCGTGGGCTGATAGTAGACAGGCCTTTGAAGTTCAAGCATTTGAATCTTCGGAAGGGTCTGAATCTGAAGAGGCGACACCAAGAATTTTTGATGAGATTTAGAGAAATTCCAGATGTGTGCCCTTACAATACCCCTGCCTCGGAATTGCCAAAAGAGTCAATTGAGGCAGAGAAAAGAGCTTGTTTGGTGGTGAGAGAAATGCTAGGGATGATGGTTGAAAAGAGAACATTAATAGACCACTTGACACATTTTAGAAAAGAGTTTGGTCTGCCCAACAAGTTGAGAGGGATGATTGTGAGGCACCCTGAGTTATTCTATGTGAGCTTGAAAGGGCAGAGGGATTCTGTATTCCTGGTGGAGGGCTATGATGAGAATGGTTCACTTTTAGACAAGAAGAAAGAAACTTTGGTGATAAAGGAAAAGTTGATGGAGTTGGTCAGGGAAAGCAAGAGGTTGAGAAAAGAGAGGAGGAAAGCTCGCCTTAATAACACTAGGATTGATGACTGTAATGGTGATAATAGTGATGATGAAGATGATGATGATGATGATGATTATTATTATTATGATGATGGCTTCCTGGATTTGTTTGAGTCTGAGGATCTGTATTTGGATGACATTGGTGATGATAAAAGTGAGACACTAAATTACAGGCAGAATGGTGAGTTTTGGACTGCAGATGCTTATTCTGATGTTGAAGGCAGAGATGGGCAACATTTGGAGCCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

488

Amino Acids

56.33

Weight (kDa)

8.79

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 58 - 396 4.3e-95 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62990
fragaria_vesca FvH4_4g12420
malus_domestica MD04G1026700.v1.1 MD04G1027400.v1.1
prunus_persica Prupe.1G176800_v2.0.a1
pyrus_communis pycom04g02270
rosa_chinensis RchiOBHm_Chr4g0410651
rosa_laevigata RLG00000008409
rosa_multiflora Rmu_co8404567.1_g000001 Rmu_sc0006144.1_g000002
rosa_roxburghii Rroxscaffold_5G00355430
rosa_rugosa Rorug04G0111800
rosa_samantha Rh4AG162100 Rh4BG161100 Rh4CG175100 Rh4DG157900
rosa_wichuraiana Rw4G013520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1038
AccB7I CCANNNNNTGG 2 cut(s) 590, 703
AccI GTMKAC 1 cut(s) 753
AccII CGCG 1 cut(s) 739
AciI CCGC 2 cut(s) 275, 719
AclWI GGATC 3 cut(s) 294, 337, 1344
AcsI RAATTY 3 cut(s) 641, 821, 843
AcuI CTGAAG 3 cut(s) 251, 263, 824
AfeI AGCGCT 1 cut(s) 459
AfiI CCNNNNNNNGG 5 cut(s) 590, 666, 703, 877, 1096
AjnI CCWGG 4 cut(s) 689, 702, 1089, 1314
AjuI GAANNNNNNNTTGG 2 cut(s) 1127, 1159
AluBI AGCT 5 cut(s) 449, 682, 917, 1062, 1214
AluI AGCT 5 cut(s) 449, 682, 917, 1062, 1214
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 1 cut(s) 1367
Alw44I GTGCAC 1 cut(s) 672
AlwI GGATC 3 cut(s) 294, 337, 1344
Aor51HI AGCGCT 1 cut(s) 459
AoxI GGCC 1 cut(s) 758
ApaLI GTGCAC 1 cut(s) 672
ApeKI GCWGC 3 cut(s) 449, 452, 455
ApoI RAATTY 3 cut(s) 641, 821, 843
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AseI ATTAAT 1 cut(s) 968
AspLEI GCGC 1 cut(s) 460
AspS9I GGNCC 3 cut(s) 327, 581, 694
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 8 cut(s) 539, 566, 590, 940, 1159, 1262, 1370, 1409
AvaII GGWCC 3 cut(s) 327, 581, 694
BaeGI GKGCMC 2 cut(s) 676, 860
BanI GGYRCC 1 cut(s) 1038
BbsI GAAGAC 2 cut(s) 364, 587
Bbv12I GWGCWC 1 cut(s) 676
BbvI GCAGC 3 cut(s) 436, 464, 467
BccI CCATC 8 cut(s) 338, 354, 500, 639, 943, 1159, 1301, 1436
BciT130I CCWGG 4 cut(s) 691, 704, 1091, 1316
BciVI GTATCC 1 cut(s) 697
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 1367
BfaI CTAG 4 cut(s) 188, 554, 941, 1230
BfmI CTRYAG 2 cut(s) 450, 1410
BfoI RGCGCY 1 cut(s) 461
BfuI GTATCC 1 cut(s) 697
BglII AGATCT 1 cut(s) 586
BisI GCNGC 3 cut(s) 450, 453, 456
BlsI GCNGC 3 cut(s) 451, 454, 457
Bme1390I CCNGG 5 cut(s) 325, 691, 704, 1091, 1316
Bme18I GGWCC 3 cut(s) 327, 581, 694
BmgT120I GGNCC 3 cut(s) 327, 581, 694
BmiI GGNNCC 3 cut(s) 695, 1040, 1458
BmrFI CCNGG 5 cut(s) 325, 691, 704, 1091, 1316
BmsI GCATC 2 cut(s) 254, 1405
BpiI GAAGAC 2 cut(s) 364, 587
BplI GAGNNNNNCTC 2 cut(s) 1198, 1230
BpmI CTGGAG 2 cut(s) 503, 708
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 1 cut(s) 325
BsaJI CCNNGG 7 cut(s) 74, 323, 504, 577, 690, 876, 1460
BsaXI ACNNNNNCTCC 1 cut(s) 1448
Bsc4I CCNNNNNNNGG 5 cut(s) 590, 666, 703, 877, 1096
Bse118I RCCGGY 1 cut(s) 549
Bse3DI GCAATG 1 cut(s) 631
BseBI CCWGG 4 cut(s) 691, 704, 1091, 1316
BseDI CCNNGG 7 cut(s) 74, 323, 504, 577, 690, 876, 1460
BseGI GGATG 5 cut(s) 330, 631, 951, 1032, 1354
BseLI CCNNNNNNNGG 5 cut(s) 590, 666, 703, 877, 1096
BseMI GCAATG 1 cut(s) 631
BseMII CTCAG 2 cut(s) 1035, 1323
BseRI GAGGAG 1 cut(s) 1219
BseSI GKGCMC 2 cut(s) 676, 860
BseXI GCAGC 3 cut(s) 436, 464, 467
BseYI CCCAGC 1 cut(s) 445
BsgI GTGCAG 1 cut(s) 488
Bsh1236I CGCG 1 cut(s) 739
BshFI GGCC 1 cut(s) 760
BshNI GGYRCC 1 cut(s) 1038
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 2 cut(s) 325, 550
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 5 cut(s) 590, 666, 703, 877, 1096
BsmAI GTCTC 1 cut(s) 1367
BsmFI GGGAC 1 cut(s) 707
BsnI GGCC 1 cut(s) 760
Bsp1286I GDGCHC 2 cut(s) 676, 860
Bsp143I GATC 4 cut(s) 299, 342, 586, 1336
BspACI CCGC 2 cut(s) 275, 719
BspANI GGCC 1 cut(s) 760
BspCNI CTCAG 2 cut(s) 1036, 1324
BspFNI CGCG 1 cut(s) 739
BspLI GGNNCC 3 cut(s) 695, 1040, 1458
BspMAI CTGCAG 2 cut(s) 454, 1414
BspPI GGATC 3 cut(s) 294, 337, 1344
BspT107I GGYRCC 1 cut(s) 1038
BsrDI GCAATG 1 cut(s) 631
BsrFI RCCGGY 1 cut(s) 549
BssAI RCCGGY 1 cut(s) 549
BssECI CCNNGG 7 cut(s) 74, 323, 504, 577, 690, 876, 1460
BssMI GATC 4 cut(s) 299, 342, 586, 1336
BssT1I CCWWGG 4 cut(s) 74, 504, 577, 1460
Bst2UI CCWGG 4 cut(s) 691, 704, 1091, 1316
Bst4CI ACNGT 4 cut(s) 122, 172, 222, 1244
Bst6I CTCTTC 1 cut(s) 800
BstAPI GCANNNNNTGC 1 cut(s) 461
BstC8I GCNNGC 3 cut(s) 462, 672, 1216
BstDEI CTNAG 2 cut(s) 1044, 1332
BstENI CCTNNNNNAGG 1 cut(s) 1094
BstF5I GGATG 5 cut(s) 330, 631, 951, 1032, 1354
BstFNI CGCG 1 cut(s) 739
BstH2I RGCGCY 1 cut(s) 461
BstHHI GCGC 1 cut(s) 460
BstKTI GATC 4 cut(s) 302, 345, 589, 1339
BstMAI GTCTC 1 cut(s) 1367
BstMBI GATC 4 cut(s) 299, 342, 586, 1336
BstMWI GCNNNNNNNGC 3 cut(s) 455, 461, 466
BstNI CCWGG 4 cut(s) 691, 704, 1091, 1316
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 5 cut(s) 323, 689, 702, 1089, 1314
BstSFI CTRYAG 2 cut(s) 450, 1410
BstSLI GKGCMC 2 cut(s) 676, 860
BstUI CGCG 1 cut(s) 739
BstV1I GCAGC 3 cut(s) 436, 464, 467
BstV2I GAAGAC 2 cut(s) 364, 587
BstX2I RGATCY 2 cut(s) 586, 1336
BstYI RGATCY 2 cut(s) 586, 1336
BsuI GTATCC 1 cut(s) 697
BsuRI GGCC 1 cut(s) 760
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 5 cut(s) 330, 631, 951, 1032, 1354
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 3 cut(s) 462, 672, 1216
CfoI GCGC 1 cut(s) 460
Cfr10I RCCGGY 1 cut(s) 549
Cfr13I GGNCC 3 cut(s) 327, 581, 694
CseI GACGC 1 cut(s) 396
CviAII CATG 2 cut(s) 197, 394
DdeI CTNAG 2 cut(s) 1044, 1332
DpnI GATC 4 cut(s) 301, 344, 588, 1338
DpnII GATC 4 cut(s) 299, 342, 586, 1336
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
Eco130I CCWWGG 4 cut(s) 74, 504, 577, 1460
Eco147I AGGCCT 1 cut(s) 760
Eco47I GGWCC 3 cut(s) 327, 581, 694
Eco47III AGCGCT 1 cut(s) 459
Eco57I CTGAAG 3 cut(s) 251, 263, 824
EcoNI CCTNNNNNAGG 1 cut(s) 1094
EcoRII CCWGG 4 cut(s) 689, 702, 1089, 1314
EcoT14I CCWWGG 4 cut(s) 74, 504, 577, 1460
ErhI CCWWGG 4 cut(s) 74, 504, 577, 1460
FaeI CATG 2 cut(s) 200, 397
FaiI YATR 8 cut(s) 111, 198, 270, 395, 533, 1056, 1104, 1302
FalI AAGNNNNNCTT 2 cut(s) 1203, 1235
FaqI GGGAC 1 cut(s) 707
FatI CATG 2 cut(s) 196, 393
FblI GTMKAC 1 cut(s) 753
Fnu4HI GCNGC 3 cut(s) 450, 453, 456
FokI GGATG 5 cut(s) 317, 618, 958, 1039, 1361
Fsp4HI GCNGC 3 cut(s) 450, 453, 456
FspBI CTAG 4 cut(s) 188, 554, 941, 1230
GlaI GCGC 1 cut(s) 459
GluI GCNGC 3 cut(s) 450, 453, 456
GsaI CCCAGC 1 cut(s) 449
GsuI CTGGAG 2 cut(s) 503, 708
HaeII RGCGCY 1 cut(s) 461
HaeIII GGCC 1 cut(s) 760
HapII CCGG 2 cut(s) 325, 550
HgaI GACGC 1 cut(s) 396
HhaI GCGC 1 cut(s) 460
Hin1II CATG 2 cut(s) 200, 397
Hin6I GCGC 1 cut(s) 458
HinP1I GCGC 1 cut(s) 458
HpaII CCGG 2 cut(s) 325, 550
HphI GGTGA 8 cut(s) 539, 566, 590, 940, 1159, 1262, 1370, 1409
Hpy166II GTNNAC 4 cut(s) 574, 674, 754, 1118
Hpy188I TCNGA 9 cut(s) 64, 282, 499, 789, 798, 804, 880, 1333, 1426
Hpy188III TCNNGA 7 cut(s) 229, 520, 584, 635, 646, 725, 848
Hpy8I GTNNAC 4 cut(s) 574, 674, 754, 1118
HpyAV CCTTC 3 cut(s) 192, 784, 1427
HpyCH4III ACNGT 4 cut(s) 122, 172, 222, 1244
HpyCH4V TGCA 5 cut(s) 452, 469, 624, 674, 1412
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 461, 466
HpyF3I CTNAG 2 cut(s) 1044, 1332
Hsp92II CATG 2 cut(s) 200, 397
HspAI GCGC 1 cut(s) 458
Kzo9I GATC 4 cut(s) 299, 342, 586, 1336
LmnI GCTCC 2 cut(s) 252, 1456
Lsp1109I GCAGC 3 cut(s) 436, 464, 467
LweI GCATC 2 cut(s) 254, 1405
MaeI CTAG 4 cut(s) 188, 554, 941, 1230
MaeIII GTNAC 2 cut(s) 234, 350
MalI GATC 4 cut(s) 301, 344, 588, 1338
MboI GATC 4 cut(s) 299, 342, 586, 1336
MboII GAAGA 7 cut(s) 364, 531, 587, 776, 817, 1144, 1280
MfeI CAATTG 1 cut(s) 897
MflI RGATCY 2 cut(s) 586, 1336
MhlI GDGCHC 2 cut(s) 676, 860
MluCI AATT 7 cut(s) 604, 641, 821, 843, 881, 897, 1381
MlyI GAGTC 4 cut(s) 472, 494, 902, 1337
MseI TTAA 3 cut(s) 288, 968, 1221
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 2 cut(s) 325, 550
MspR9I CCNGG 5 cut(s) 325, 691, 704, 1091, 1316
MunI CAATTG 1 cut(s) 897
MvaI CCWGG 4 cut(s) 691, 704, 1091, 1316
MvnI CGCG 1 cut(s) 739
MwoI GCNNNNNNNGC 3 cut(s) 455, 461, 466
NciI CCSGG 1 cut(s) 325
NdeII GATC 4 cut(s) 299, 342, 586, 1336
NlaIII CATG 2 cut(s) 200, 397
NlaIV GGNNCC 3 cut(s) 695, 1040, 1458
NmeAIII GCCGAG 1 cut(s) 595
NspI RCATGY 1 cut(s) 200
PceI AGGCCT 1 cut(s) 760
PfeI GAWTC 6 cut(s) 79, 283, 473, 781, 799, 1079
PflMI CCANNNNNTGG 2 cut(s) 590, 703
PfoI TCCNGGA 1 cut(s) 1314
PkrI GCNGC 3 cut(s) 451, 454, 457
PleI GAGTC 4 cut(s) 472, 494, 901, 1336
PpsI GAGTC 4 cut(s) 472, 494, 901, 1336
PshBI ATTAAT 1 cut(s) 968
Psp6I CCWGG 4 cut(s) 689, 702, 1089, 1314
PspFI CCCAGC 1 cut(s) 445
PspGI CCWGG 4 cut(s) 689, 702, 1089, 1314
PspN4I GGNNCC 3 cut(s) 695, 1040, 1458
PspPI GGNCC 3 cut(s) 327, 581, 694
PstI CTGCAG 2 cut(s) 454, 1414
PsuI RGATCY 2 cut(s) 586, 1336
PvuII CAGCTG 1 cut(s) 449
SaqAI TTAA 3 cut(s) 288, 968, 1221
SatI GCNGC 3 cut(s) 450, 453, 456
Sau3AI GATC 4 cut(s) 299, 342, 586, 1336
Sau96I GGNCC 3 cut(s) 327, 581, 694
SchI GAGTC 4 cut(s) 472, 494, 902, 1337
ScrFI CCNGG 5 cut(s) 325, 691, 704, 1091, 1316
SduI GDGCHC 2 cut(s) 676, 860
SfaNI GCATC 2 cut(s) 254, 1405
SfcI CTRYAG 2 cut(s) 450, 1410
SinI GGWCC 3 cut(s) 327, 581, 694
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 7 cut(s) 604, 641, 821, 843, 881, 897, 1381
SseBI AGGCCT 1 cut(s) 760
SsiI CCGC 2 cut(s) 275, 719
SspMI CTAG 4 cut(s) 188, 554, 941, 1230
StuI AGGCCT 1 cut(s) 760
StyD4I CCNGG 5 cut(s) 323, 689, 702, 1089, 1314
StyI CCWWGG 4 cut(s) 74, 504, 577, 1460
TaaI ACNGT 4 cut(s) 122, 172, 222, 1244
TaqI TCGA 2 cut(s) 298, 476
TasI AATT 7 cut(s) 604, 641, 821, 843, 881, 897, 1381
TfiI GAWTC 6 cut(s) 79, 283, 473, 781, 799, 1079
Tru1I TTAA 3 cut(s) 288, 968, 1221
Tru9I TTAA 3 cut(s) 288, 968, 1221
TscAI CASTG 1 cut(s) 249
TseI GCWGC 3 cut(s) 449, 452, 455
TspDTI ATGAA 1 cut(s) 1281
TspGWI ACGGA 1 cut(s) 425
TspRI CASTG 1 cut(s) 249
Van91I CCANNNNNTGG 2 cut(s) 590, 703
VneI GTGCAC 1 cut(s) 672
VpaK11BI GGWCC 3 cut(s) 327, 581, 694
VspI ATTAAT 1 cut(s) 968
XagI CCTNNNNNAGG 1 cut(s) 1094
XapI RAATTY 3 cut(s) 641, 821, 843
XceI RCATGY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 753
XspI CTAG 4 cut(s) 188, 554, 941, 1230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.