pycom04g02270

Plant organelle RNA recognition domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0014357
Physical Location & Seq
Forward (+)
2030803 .. 2032261
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g02270.1

Sequence Viewer

Length: 1419 bp
ATGGAGTTGTCTTTGCCTTTCTCATTGCAAAGGGATTTACCCATCACTTCTCTCAGATCCAGCTTCCTCCCTCGGAATCCTCGTTGCTTATTAGGTACAGTCAAGAGGAATTATAAAAACAATAGGATCTCAGAAAATATCCCTTTTTCAGTTTCTTGCTTGTCTGTCAAAACTGTCCGCAACGTTTTGTCCAAAAGCTACAAACACTGCTTCTTTCCAAACCGAAATGCTATATTCCAATTCATATTCTCAATAAGTGTCGAGCCTACCTTTCCCTATCTGATGGAAAAGCCACGATCCATTCTCTCAATGATTCATCGATACCCTACTATTTTTGAACTCTTCTCAATCCCAACAGCTCCCTTGCCATCCAATGCAACTAAATCATTTTCACAACTCTGTGTCCGTCTAACCCCAGCTGCAGCAGCCCTTGCTGCTGAGGAATTATGTCTCAAATCAGCCATCTCTGACTCCTTGGCCACAAAACTCCAGAAACTTCTTATGCTCTCTTCTCATCATCGACTACTTCTGTCAAAGTTGGTTCACCTAGCTCCAGATCTTGGTCTTCCCCCTAATTTTCGCTCTCGTCTATGCAATGACTATCCAAATAAATTCAAGACTGTTGACACCTCCTATGGCCGTGCACTTGAGCTTGTCTCCTGGGACCAAGACTTGGCAAAGCCTTTACCATCTCCAGAAGTTCAGTCACGTGAGCTAATAGTAGACAGACCTTTGAAATTCAAGCAGTTGACGCTCCGAAAGGGTCTAAATTTGAAGAGGCGTCACCAGGATTTTTTGCTCAAATTCAAAGAAATTCCAGATGTGTGCCCATACAATACCCCCATCTCGGACTTGCCTAAAGAGTCAATTGAGGCAGAGAAGAGAGCTTGTTTGGTGGTGAGAGAAGTGCTAGGGATGACGGTTGAAAAGAGAACTTTGATAGACCACTTGACTCATTTTAGGAATGATTTTGTGCTGTCCAACAAGTTGAGAGGGATGATCATACGGCACCCGGAGTTATTCTATGTGAGCTTGAAAGGGCAGAGAGATTCAGTGTTTTTAGTGGAGGGTTTTGATGAAAAGGGTGCACTGTTGGAGAAGAAAGAGACTTTGGTGATAAAGGAAAAGTTGATGCAGTTGGTCAGAGAAAGCAAGAGAATAAGAAGAGAGAGGAAGAAAGCAAGGATTAACAACACTGAGATTGGTGGCTCTACTGATGACTTTGAGTCCGATGATGATGATGATGACGACGACTATGATGATGGTTTTCAGAGTTTGTTTGAGCCTGAAGATTTTTATGTGGATGATGATGGTGATAAGAAGGGTGAGACAATTGACTACAGGGAGAAAGGGCAGTTTTGGACTGTTGATGCTCATTCTGTTCATGATGGCGGGAAGCAACAAATGGAACCTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

473

Amino Acids

54.37

Weight (kDa)

8.59

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 97 - 385 1.5e-83 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G62990
fragaria_vesca FvH4_4g12420
malus_domestica MD04G1026700.v1.1 MD04G1027400.v1.1
prunus_persica Prupe.1G176800_v2.0.a1
pyrus_communis pycom04g02270
rosa_chinensis RchiOBHm_Chr4g0410651
rosa_laevigata RLG00000008409
rosa_multiflora Rmu_co8404567.1_g000001 Rmu_sc0006144.1_g000002
rosa_roxburghii Rroxscaffold_5G00355430
rosa_rugosa Rorug04G0111800
rosa_samantha Rh4AG162100 Rh4BG161100 Rh4CG175100 Rh4DG157900
rosa_wichuraiana Rw4G013520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 1008
AccB7I CCANNNNNTGG 2 cut(s) 560, 673
AccI GTMKAC 1 cut(s) 723
AciI CCGC 2 cut(s) 178, 1392
AclI AACGTT 1 cut(s) 183
AclWI GGATC 3 cut(s) 51, 134, 291
AcoI YGGCCR 2 cut(s) 477, 637
AcsI RAATTY 5 cut(s) 611, 737, 769, 803, 813
AcuI CTGAAG 1 cut(s) 1308
AcvI CACGTG 1 cut(s) 710
AcyI GRCGYC 1 cut(s) 781
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 3 cut(s) 560, 673, 847
AgsI TTSAA 8 cut(s) 338, 616, 736, 742, 775, 808, 926, 1036
AhdI GACNNNNNGTC 1 cut(s) 1225
AjnI CCWGG 2 cut(s) 659, 786
AjuI GAANNNNNNNTTGG 2 cut(s) 1094, 1126
AluBI AGCT 9 cut(s) 63, 198, 359, 419, 551, 652, 715, 887, 1032
AluI AGCT 9 cut(s) 63, 198, 359, 419, 551, 652, 715, 887, 1032
Alw21I GWGCWC 2 cut(s) 646, 1090
Alw26I GTCTC 4 cut(s) 455, 661, 1100, 1322
Alw44I GTGCAC 2 cut(s) 642, 1086
AlwI GGATC 3 cut(s) 51, 134, 291
AoxI GGCC 2 cut(s) 477, 637
ApaLI GTGCAC 2 cut(s) 642, 1086
ApeKI GCWGC 4 cut(s) 419, 422, 425, 434
ApoI RAATTY 5 cut(s) 611, 737, 769, 803, 813
AspS9I GGNCC 1 cut(s) 664
AsuC2I CCSGG 1 cut(s) 1013
AsuHPI GGTGA 6 cut(s) 536, 776, 910, 1126, 1325, 1337
AvaII GGWCC 1 cut(s) 664
BaeGI GKGCMC 3 cut(s) 646, 830, 1090
BalI TGGCCA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 1008
BbrPI CACGTG 1 cut(s) 710
BbsI GAAGAC 1 cut(s) 557
Bbv12I GWGCWC 2 cut(s) 646, 1090
BbvCI CCTCAGC 1 cut(s) 438
BbvI GCAGC 4 cut(s) 406, 421, 434, 437
BccI CCATC 9 cut(s) 50, 277, 376, 470, 697, 851, 1256, 1304, 1382
BceAI ACGGC 2 cut(s) 624, 1022
BciT130I CCWGG 2 cut(s) 661, 788
BclI TGATCA 1 cut(s) 999
BcnI CCSGG 1 cut(s) 1013
BcoDI GTCTC 4 cut(s) 455, 661, 1100, 1322
BfaI CTAG 2 cut(s) 548, 911
BfmI CTRYAG 2 cut(s) 420, 1339
BglII AGATCT 1 cut(s) 556
BisI GCNGC 4 cut(s) 420, 423, 426, 435
BlsI GCNGC 4 cut(s) 421, 424, 427, 436
Bme1390I CCNGG 3 cut(s) 661, 788, 1013
Bme18I GGWCC 1 cut(s) 664
BmeRI GACNNNNNGTC 1 cut(s) 1225
BmgT120I GGNCC 1 cut(s) 664
BmiI GGNNCC 3 cut(s) 665, 1010, 1410
BmrFI CCNGG 3 cut(s) 661, 788, 1013
BmsI GCATC 2 cut(s) 1122, 1360
BpiI GAAGAC 1 cut(s) 557
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpmI CTGGAG 3 cut(s) 473, 537, 678
Bpu10I CCTNAGC 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 668
BpuMI CCSGG 1 cut(s) 1013
Bsa29I ATCGAT 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 710
BsaHI GRCGYC 1 cut(s) 781
BsaJI CCNNGG 4 cut(s) 71, 474, 660, 1412
Bsc4I CCNNNNNNNGG 3 cut(s) 560, 673, 847
Bse3DI GCAATG 2 cut(s) 23, 601
BseBI CCWGG 2 cut(s) 661, 788
BseCI ATCGAT 1 cut(s) 319
BseDI CCNNGG 4 cut(s) 71, 474, 660, 1412
BseGI GGATG 4 cut(s) 368, 921, 1002, 1309
BseLI CCNNNNNNNGG 3 cut(s) 560, 673, 847
BseMI GCAATG 2 cut(s) 23, 601
BseMII CTCAG 4 cut(s) 67, 144, 429, 1188
BseSI GKGCMC 3 cut(s) 646, 830, 1090
BseXI GCAGC 4 cut(s) 406, 421, 434, 437
BseYI CCCAGC 1 cut(s) 415
BshFI GGCC 2 cut(s) 479, 639
BshNI GGYRCC 1 cut(s) 1008
BshVI ATCGAT 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 646, 1090
BsiSI CCGG 1 cut(s) 1013
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 3 cut(s) 560, 673, 847
BsmAI GTCTC 4 cut(s) 455, 661, 1100, 1322
BsmFI GGGAC 1 cut(s) 677
BsnI GGCC 2 cut(s) 479, 639
Bsp1286I GDGCHC 3 cut(s) 646, 830, 1090
Bsp143I GATC 5 cut(s) 56, 126, 296, 556, 999
BspACI CCGC 2 cut(s) 178, 1392
BspANI GGCC 2 cut(s) 479, 639
BspCNI CTCAG 4 cut(s) 66, 143, 430, 1189
BspDI ATCGAT 1 cut(s) 319
BspHI TCATGA 1 cut(s) 1384
BspLI GGNNCC 3 cut(s) 665, 1010, 1410
BspMAI CTGCAG 1 cut(s) 424
BspPI GGATC 3 cut(s) 51, 134, 291
BspT107I GGYRCC 1 cut(s) 1008
BsrDI GCAATG 2 cut(s) 23, 601
BssECI CCNNGG 4 cut(s) 71, 474, 660, 1412
BssMI GATC 5 cut(s) 56, 126, 296, 556, 999
BssNI GRCGYC 1 cut(s) 781
BssT1I CCWWGG 2 cut(s) 474, 1412
Bst2UI CCWGG 2 cut(s) 661, 788
Bst4CI ACNGT 6 cut(s) 100, 175, 622, 922, 1092, 1366
Bst6I CTCTTC 5 cut(s) 347, 514, 770, 875, 1159
BstACI GRCGYC 1 cut(s) 781
BstAPI GCANNNNNTGC 1 cut(s) 431
BstBAI YACGTR 1 cut(s) 710
BstDEI CTNAG 4 cut(s) 53, 130, 438, 1197
BstF5I GGATG 4 cut(s) 368, 921, 1002, 1309
BstKTI GATC 5 cut(s) 59, 129, 299, 559, 1002
BstMAI GTCTC 4 cut(s) 455, 661, 1100, 1322
BstMBI GATC 5 cut(s) 56, 126, 296, 556, 999
BstMWI GCNNNNNNNGC 4 cut(s) 425, 431, 434, 751
BstNI CCWGG 2 cut(s) 661, 788
BstSCI CCNGG 3 cut(s) 659, 786, 1011
BstSFI CTRYAG 2 cut(s) 420, 1339
BstSLI GKGCMC 3 cut(s) 646, 830, 1090
BstV1I GCAGC 4 cut(s) 406, 421, 434, 437
BstV2I GAAGAC 1 cut(s) 557
BstX2I RGATCY 3 cut(s) 56, 126, 556
BstYI RGATCY 3 cut(s) 56, 126, 556
Bsu15I ATCGAT 1 cut(s) 319
BsuRI GGCC 2 cut(s) 479, 639
BsuTUI ATCGAT 1 cut(s) 319
BtsCI GGATG 4 cut(s) 368, 921, 1002, 1309
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 4 cut(s) 205, 1059, 1088, 1194
CciI TCATGA 1 cut(s) 1384
Cfr13I GGNCC 1 cut(s) 664
ClaI ATCGAT 1 cut(s) 319
CseI GACGC 2 cut(s) 760, 770
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 1385
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 4 cut(s) 53, 130, 438, 1197
DpnI GATC 5 cut(s) 58, 128, 298, 558, 1001
DpnII GATC 5 cut(s) 56, 126, 296, 556, 999
DriI GACNNNNNGTC 1 cut(s) 1225
EaeI YGGCCR 2 cut(s) 477, 637
Eam1104I CTCTTC 5 cut(s) 347, 514, 770, 875, 1159
Eam1105I GACNNNNNGTC 1 cut(s) 1225
EarI CTCTTC 5 cut(s) 347, 514, 770, 875, 1159
Eco130I CCWWGG 2 cut(s) 474, 1412
Eco47I GGWCC 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 1308
Eco72I CACGTG 1 cut(s) 710
EcoRII CCWGG 2 cut(s) 659, 786
EcoT14I CCWWGG 2 cut(s) 474, 1412
ErhI CCWWGG 2 cut(s) 474, 1412
FaeI CATG 1 cut(s) 1388
FaqI GGGAC 1 cut(s) 677
FatI CATG 1 cut(s) 1384
FauI CCCGC 1 cut(s) 1385
FbaI TGATCA 1 cut(s) 999
FblI GTMKAC 1 cut(s) 723
Fnu4HI GCNGC 4 cut(s) 420, 423, 426, 435
FokI GGATG 4 cut(s) 355, 928, 1009, 1316
Fsp4HI GCNGC 4 cut(s) 420, 423, 426, 435
FspBI CTAG 2 cut(s) 548, 911
GluI GCNGC 4 cut(s) 420, 423, 426, 435
GsaI CCCAGC 1 cut(s) 419
GsuI CTGGAG 3 cut(s) 473, 537, 678
HaeIII GGCC 2 cut(s) 479, 639
HapII CCGG 1 cut(s) 1013
HgaI GACGC 2 cut(s) 760, 770
Hin1I GRCGYC 1 cut(s) 781
Hin1II CATG 1 cut(s) 1388
HincII GTYRAC 2 cut(s) 625, 750
HindII GTYRAC 2 cut(s) 625, 750
HinfI GANTC 7 cut(s) 76, 313, 470, 863, 952, 1049, 1226
HpaII CCGG 1 cut(s) 1013
HphI GGTGA 6 cut(s) 536, 776, 910, 1126, 1325, 1337
Hpy166II GTNNAC 6 cut(s) 544, 625, 644, 724, 750, 1088
Hpy188III TCNNGA 7 cut(s) 103, 490, 554, 616, 695, 818, 1385
Hpy8I GTNNAC 6 cut(s) 544, 625, 644, 724, 750, 1088
Hpy99I CGWCG 1 cut(s) 1253
HpyAV CCTTC 1 cut(s) 1315
HpyCH4III ACNGT 6 cut(s) 100, 175, 622, 922, 1092, 1366
HpyCH4IV ACGT 2 cut(s) 183, 709
HpyCH4V TGCA 7 cut(s) 28, 377, 422, 594, 644, 1088, 1135
HpyF10VI GCNNNNNNNGC 4 cut(s) 425, 431, 434, 751
HpyF3I CTNAG 4 cut(s) 53, 130, 438, 1197
HpySE526I ACGT 2 cut(s) 183, 709
Hsp92I GRCGYC 1 cut(s) 781
Hsp92II CATG 1 cut(s) 1388
Ksp22I TGATCA 1 cut(s) 999
Kzo9I GATC 5 cut(s) 56, 126, 296, 556, 999
LmnI GCTCC 3 cut(s) 364, 556, 759
Lsp1109I GCAGC 4 cut(s) 406, 421, 434, 437
LweI GCATC 2 cut(s) 1122, 1360
MaeI CTAG 2 cut(s) 548, 911
MaeII ACGT 2 cut(s) 183, 709
MaeIII GTNAC 2 cut(s) 705, 782
MalI GATC 5 cut(s) 58, 128, 298, 558, 1001
MboI GATC 5 cut(s) 56, 126, 296, 556, 999
MboII GAAGA 9 cut(s) 334, 501, 557, 787, 892, 1111, 1176, 1186, 1301
MfeI CAATTG 2 cut(s) 867, 1332
MflI RGATCY 3 cut(s) 56, 126, 556
MhlI GDGCHC 3 cut(s) 646, 830, 1090
MlsI TGGCCA 1 cut(s) 479
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 4 cut(s) 464, 872, 946, 1235
MmeI TCCRAC 2 cut(s) 1005, 1074
Mox20I TGGCCA 1 cut(s) 479
MscI TGGCCA 1 cut(s) 479
MseI TTAA 1 cut(s) 1188
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 1 cut(s) 1013
MspR9I CCNGG 3 cut(s) 661, 788, 1013
MunI CAATTG 2 cut(s) 867, 1332
MvaI CCWGG 2 cut(s) 661, 788
MwoI GCNNNNNNNGC 4 cut(s) 425, 431, 434, 751
NciI CCSGG 1 cut(s) 1013
NdeII GATC 5 cut(s) 56, 126, 296, 556, 999
NlaIII CATG 1 cut(s) 1388
NlaIV GGNNCC 3 cut(s) 665, 1010, 1410
NmuCI GTSAC 2 cut(s) 705, 782
PagI TCATGA 1 cut(s) 1384
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PfeI GAWTC 3 cut(s) 76, 313, 1049
PflMI CCANNNNNTGG 2 cut(s) 560, 673
PkrI GCNGC 4 cut(s) 421, 424, 427, 436
PleI GAGTC 4 cut(s) 464, 871, 946, 1234
PmaCI CACGTG 1 cut(s) 710
PmlI CACGTG 1 cut(s) 710
PpsI GAGTC 4 cut(s) 464, 871, 946, 1234
Ppu21I YACGTR 1 cut(s) 710
PsiI TTATAA 1 cut(s) 114
Psp1406I AACGTT 1 cut(s) 183
Psp6I CCWGG 2 cut(s) 659, 786
PspCI CACGTG 1 cut(s) 710
PspFI CCCAGC 1 cut(s) 415
PspGI CCWGG 2 cut(s) 659, 786
PspN4I GGNNCC 3 cut(s) 665, 1010, 1410
PspPI GGNCC 1 cut(s) 664
PstI CTGCAG 1 cut(s) 424
PsuI RGATCY 3 cut(s) 56, 126, 556
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 1188
SatI GCNGC 4 cut(s) 420, 423, 426, 435
Sau3AI GATC 5 cut(s) 56, 126, 296, 556, 999
Sau96I GGNCC 1 cut(s) 664
SchI GAGTC 4 cut(s) 464, 872, 946, 1235
ScrFI CCNGG 3 cut(s) 661, 788, 1013
SduI GDGCHC 3 cut(s) 646, 830, 1090
SfaNI GCATC 2 cut(s) 1122, 1360
SfcI CTRYAG 2 cut(s) 420, 1339
SinI GGWCC 1 cut(s) 664
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
SsiI CCGC 2 cut(s) 178, 1392
SspMI CTAG 2 cut(s) 548, 911
StyD4I CCNGG 3 cut(s) 659, 786, 1011
StyI CCWWGG 2 cut(s) 474, 1412
TaaI ACNGT 6 cut(s) 100, 175, 622, 922, 1092, 1366
TaiI ACGT 2 cut(s) 186, 712
TaqI TCGA 3 cut(s) 261, 319, 520
TfiI GAWTC 3 cut(s) 76, 313, 1049
Tru1I TTAA 1 cut(s) 1188
Tru9I TTAA 1 cut(s) 1188
TscAI CASTG 4 cut(s) 212, 1059, 1095, 1201
TseFI GTSAC 2 cut(s) 705, 782
TseI GCWGC 4 cut(s) 419, 422, 425, 434
Tsp45I GTSAC 2 cut(s) 705, 782
TspDTI ATGAA 4 cut(s) 232, 305, 1092, 1373
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 4 cut(s) 212, 1059, 1095, 1201
Van91I CCANNNNNTGG 2 cut(s) 560, 673
VneI GTGCAC 2 cut(s) 642, 1086
VpaK11BI GGWCC 1 cut(s) 664
XapI RAATTY 5 cut(s) 611, 737, 769, 803, 813
XmiI GTMKAC 1 cut(s) 723
XspI CTAG 2 cut(s) 548, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.