FvH4_4g12460

Voltage-gated hydrogen channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012015
Physical Location & Seq
Reverse (-)
16135497 .. 16136398
902 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12460.t1

Sequence Viewer

Length: 816 bp
ATGGCATTCAACGTGACCCCAAAGCATAAGAACCTCAAGCTTGCACTTCTCGTTTCTTTATCGTTCACCAACAATGGGTCCTCCTCTCAAATCCAGCAACAAAGACCTTCCACTGCAAACTCATTCTCTATAGAATTGGTCGAATCCTCAATACGAAATCTGTTAAGGAGCTGGTACAGAAGGCAGAGATGGAAGTTTTTGTTCAACTCCACACCACCACAAGACCTTGATAGAGCTCCATGGAGAACCCACCTGGCCAGTTTCCTTGAATCCACACCAGTTCATGCAGTTTCTCTCGGTCTCCTCGTTATTGATCTGATCTTCACAATCCTTGAACTCTCCTCATCTTTACTTGCTACCAGCTGCAGGCCAAAAGAGAGCCACTACAATGCTACAGAAGAAATCTGGTACCACTGGGTTGGCATTGCTATTCTTTCTCTGCTTTCTGCCAAGACAATTGCCCTTGCTGTGGGGCTTGGCACCACATTCTTGAGGCGTCCAGGTTATGTCATTGATGGGATTGTTTTGATCGGCGCATTGGTGTTGGAAGTGTTTCTGGAGAAGGTAGGGGGTGGTTTGCTTGTTGTGGTGAGTTTGTGGCGAGTTGTTAGGCTAGTAGAAAGTGCGTTTGAGCTAAGTGACGAGGCCATTGAAGCACAGATTGAAGGGGTTGTATATCAGTTTGAGATGTTGAGGGAAGAGAATAGGAAACTGTTAATAACCATAGCTGAGAAAGATCAGATTATCCAGAAGCTCCAGGAAGACTTAGATCAATGTATTTGTCACTCTGGTCGGAAATTTTCGACTAATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.51

Weight (kDa)

7.02

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10800 AT1G10800
fragaria_vesca FvH4_4g12460
malus_domestica MD04G1026300.v1.1
prunus_persica Prupe.1G176000_v2.0.a1 Prupe.2G050500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0410771
rosa_laevigata RLG00000008397
rosa_multiflora Rmu_sc0009499.1_g000005
rosa_roxburghii Rroxscaffold_5G00355520
rosa_rugosa Rorug04G0110800 Rorug04G0110900 Rorug04G0110900 Rorug04G0111000
rosa_samantha Rh4AG163000 Rh4BG162200 Rh4CG175900 Rh4DG158700
rosa_wichuraiana Rw4G013590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 408
AccB1I GGYRCC 2 cut(s) 408, 479
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 1 cut(s) 797
AcyI GRCGYC 1 cut(s) 496
AfaI GTAC 2 cut(s) 176, 410
AfiI CCNNNNNNNGG 3 cut(s) 75, 366, 469
AgsI TTSAA 6 cut(s) 10, 205, 269, 335, 653, 665
AjnI CCWGG 3 cut(s) 252, 499, 756
AluBI AGCT 7 cut(s) 40, 171, 236, 363, 634, 728, 754
AluI AGCT 7 cut(s) 40, 171, 236, 363, 634, 728, 754
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 1 cut(s) 305
AoxI GGCC 3 cut(s) 255, 368, 645
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 1 cut(s) 797
Asp700I GAANNNNTTC 1 cut(s) 552
Asp718I GGTACC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 58, 601
AvaII GGWCC 1 cut(s) 78
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 2 cut(s) 408, 479
BanII GRGCYC 1 cut(s) 238
BbsI GAAGAC 1 cut(s) 768
Bbv12I GWGCWC 1 cut(s) 238
BbvI GCAGC 1 cut(s) 350
BccI CCATC 2 cut(s) 183, 509
BciT130I CCWGG 3 cut(s) 254, 501, 758
BcoDI GTCTC 1 cut(s) 305
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 3 cut(s) 129, 364, 393
BisI GCNGC 1 cut(s) 364
BlsI GCNGC 1 cut(s) 365
Bme1390I CCNGG 3 cut(s) 254, 501, 758
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 3 cut(s) 79, 410, 481
BmrFI CCNGG 3 cut(s) 254, 501, 758
BmrI ACTGGG 1 cut(s) 424
BmuI ACTGGG 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 768
BpmI CTGGAG 2 cut(s) 578, 740
BpuEI CTTGAG 2 cut(s) 20, 511
BsaHI GRCGYC 1 cut(s) 496
BsaI GGTCTC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 239
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 366, 469
Bse1I ACTGG 3 cut(s) 258, 278, 419
Bse3DI GCAATG 1 cut(s) 423
BseBI CCWGG 3 cut(s) 254, 501, 758
BseDI CCNNGG 1 cut(s) 239
BseLI CCNNNNNNNGG 3 cut(s) 75, 366, 469
BseMI GCAATG 1 cut(s) 423
BseMII CTCAG 1 cut(s) 720
BseNI ACTGG 3 cut(s) 258, 278, 419
BseRI GAGGAG 3 cut(s) 73, 293, 331
BseXI GCAGC 1 cut(s) 350
BshFI GGCC 3 cut(s) 257, 370, 647
BshNI GGYRCC 2 cut(s) 408, 479
BsiHKAI GWGCWC 1 cut(s) 238
BslI CCNNNNNNNGG 3 cut(s) 75, 366, 469
BsmAI GTCTC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 3 cut(s) 257, 370, 647
Bso31I GGTCTC 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 238
Bsp143I GATC 5 cut(s) 313, 318, 528, 736, 769
Bsp19I CCATGG 1 cut(s) 239
BspANI GGCC 3 cut(s) 257, 370, 647
BspCNI CTCAG 1 cut(s) 721
BspLI GGNNCC 3 cut(s) 79, 410, 481
BspMAI CTGCAG 1 cut(s) 368
BspT107I GGYRCC 2 cut(s) 408, 479
BspTNI GGTCTC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 423
BsrI ACTGG 3 cut(s) 258, 278, 419
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 5 cut(s) 313, 318, 528, 736, 769
BssNI GRCGYC 1 cut(s) 496
BssT1I CCWWGG 1 cut(s) 239
Bst2UI CCWGG 3 cut(s) 254, 501, 758
Bst4CI ACNGT 1 cut(s) 714
Bst6I CTCTTC 1 cut(s) 693
BstACI GRCGYC 1 cut(s) 496
BstC8I GCNNGC 2 cut(s) 42, 368
BstDEI CTNAG 3 cut(s) 635, 729, 766
BstDSI CCRYGG 1 cut(s) 239
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 5 cut(s) 316, 321, 531, 739, 772
BstMAI GTCTC 1 cut(s) 305
BstMBI GATC 5 cut(s) 313, 318, 528, 736, 769
BstMWI GCNNNNNNNGC 1 cut(s) 653
BstNI CCWGG 3 cut(s) 254, 501, 758
BstSCI CCNGG 3 cut(s) 252, 499, 756
BstSFI CTRYAG 3 cut(s) 129, 364, 393
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 768
BstXI CCANNNNNNTGG 1 cut(s) 419
BsuRI GGCC 3 cut(s) 257, 370, 647
BtgI CCRYGG 1 cut(s) 239
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 111, 412
Cac8I GCNNGC 2 cut(s) 42, 368
CfoI GCGC 1 cut(s) 536
Cfr13I GGNCC 1 cut(s) 78
CseI GACGC 1 cut(s) 485
Csp6I GTAC 2 cut(s) 175, 409
CviAII CATG 3 cut(s) 240, 284, 813
CviQI GTAC 2 cut(s) 175, 409
DdeI CTNAG 3 cut(s) 635, 729, 766
DpnI GATC 5 cut(s) 315, 320, 530, 738, 771
DpnII GATC 5 cut(s) 313, 318, 528, 736, 769
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 239
Eco24I GRGCYC 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 305
Eco47I GGWCC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 78
EcoRII CCWGG 3 cut(s) 252, 499, 756
EcoT14I CCWWGG 1 cut(s) 239
EcoT22I ATGCAT 1 cut(s) 814
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 3 cut(s) 243, 287, 816
FaiI YATR 8 cut(s) 27, 131, 241, 285, 507, 676, 725, 814
FatI CATG 3 cut(s) 239, 283, 812
Fnu4HI GCNGC 1 cut(s) 364
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 364
FspBI CTAG 1 cut(s) 614
GlaI GCGC 1 cut(s) 535
GluI GCNGC 1 cut(s) 364
GsuI CTGGAG 2 cut(s) 578, 740
HaeIII GGCC 3 cut(s) 257, 370, 647
HgaI GACGC 1 cut(s) 485
HhaI GCGC 1 cut(s) 536
Hin1I GRCGYC 1 cut(s) 496
Hin1II CATG 3 cut(s) 243, 287, 816
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 2 cut(s) 143, 269
HphI GGTGA 2 cut(s) 58, 601
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 3 cut(s) 318, 741, 795
Hpy188III TCNNGA 3 cut(s) 490, 557, 748
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 4 cut(s) 117, 174, 556, 659
HpyCH4III ACNGT 1 cut(s) 714
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 5 cut(s) 44, 116, 287, 366, 812
HpyF10VI GCNNNNNNNGC 1 cut(s) 653
HpyF3I CTNAG 3 cut(s) 635, 729, 766
HpySE526I ACGT 1 cut(s) 12
Hsp92I GRCGYC 1 cut(s) 496
Hsp92II CATG 3 cut(s) 243, 287, 816
HspAI GCGC 1 cut(s) 534
KpnI GGTACC 1 cut(s) 412
Kzo9I GATC 5 cut(s) 313, 318, 528, 736, 769
LmnI GCTCC 3 cut(s) 168, 241, 759
Lsp1109I GCAGC 1 cut(s) 350
MaeI CTAG 1 cut(s) 614
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 3 cut(s) 13, 638, 782
MalI GATC 5 cut(s) 315, 320, 530, 738, 771
MboI GATC 5 cut(s) 313, 318, 528, 736, 769
MboII GAAGA 4 cut(s) 313, 410, 710, 773
MfeI CAATTG 1 cut(s) 456
MhlI GDGCHC 1 cut(s) 238
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 3 cut(s) 134, 456, 797
MluNI TGGCCA 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 525, 773
MnlI CCTC 9 cut(s) 44, 91, 94, 157, 314, 352, 486, 637, 687
Mox20I TGGCCA 1 cut(s) 257
Mph1103I ATGCAT 1 cut(s) 814
MroXI GAANNNNTTC 1 cut(s) 552
MscI TGGCCA 1 cut(s) 257
MseI TTAA 2 cut(s) 164, 716
MslI CAYNNNNRTG 1 cut(s) 387
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 363
MspR9I CCNGG 3 cut(s) 254, 501, 758
MunI CAATTG 1 cut(s) 456
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 3 cut(s) 254, 501, 758
MwoI GCNNNNNNNGC 1 cut(s) 653
NcoI CCATGG 1 cut(s) 239
NdeII GATC 5 cut(s) 313, 318, 528, 736, 769
NlaIII CATG 3 cut(s) 243, 287, 816
NlaIV GGNNCC 3 cut(s) 79, 410, 481
NmuCI GTSAC 3 cut(s) 13, 638, 782
NsiI ATGCAT 1 cut(s) 814
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 1 cut(s) 5
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 2 cut(s) 143, 269
PfoI TCCNGGA 1 cut(s) 756
PkrI GCNGC 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 78
Psp6I CCWGG 3 cut(s) 252, 499, 756
PspGI CCWGG 3 cut(s) 252, 499, 756
PspN4I GGNNCC 3 cut(s) 79, 410, 481
PspPI GGNCC 1 cut(s) 78
PspPPI RGGWCCY 1 cut(s) 78
PstI CTGCAG 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 363
RsaI GTAC 2 cut(s) 176, 410
RsaNI GTAC 2 cut(s) 175, 409
RseI CAYNNNNRTG 1 cut(s) 387
SacI GAGCTC 1 cut(s) 238
SaqAI TTAA 2 cut(s) 164, 716
SatI GCNGC 1 cut(s) 364
Sau3AI GATC 5 cut(s) 313, 318, 528, 736, 769
Sau96I GGNCC 1 cut(s) 78
ScrFI CCNGG 3 cut(s) 254, 501, 758
SduI GDGCHC 1 cut(s) 238
SfcI CTRYAG 3 cut(s) 129, 364, 393
SinI GGWCC 1 cut(s) 78
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 2 cut(s) 35, 490
SmoI CTYRAG 2 cut(s) 35, 490
Sse9I AATT 3 cut(s) 134, 456, 797
SspMI CTAG 1 cut(s) 614
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 3 cut(s) 252, 499, 756
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 714
TaiI ACGT 1 cut(s) 15
TaqI TCGA 2 cut(s) 141, 803
TaqII GACCGA 1 cut(s) 287
TasI AATT 3 cut(s) 134, 456, 797
TfiI GAWTC 2 cut(s) 143, 269
Tru1I TTAA 2 cut(s) 164, 716
Tru9I TTAA 2 cut(s) 164, 716
TscAI CASTG 2 cut(s) 118, 419
TseFI GTSAC 3 cut(s) 13, 638, 782
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 3 cut(s) 13, 638, 782
TspDTI ATGAA 1 cut(s) 272
TspRI CASTG 2 cut(s) 118, 419
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 1 cut(s) 797
XmnI GAANNNNTTC 1 cut(s) 552
XspI CTAG 1 cut(s) 614
Zsp2I ATGCAT 1 cut(s) 814
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.