Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012015

Physical Location & Seq

Genomic Coordinates Forward (+)

17440432 .. 17441883

Gene Structure 1452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0111000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTCGAGAAATTATACTGCCGTTGTCTTTGCCGTTGCTGTTGCCGCTGCCATAGCCGTTGCGTTGCCGAGTTATGGAGATCAAGGAGTTGCCATTGTTGTAGTATTAGTGAAGGTTCTAAGGGGTACCTCGGACAAGAGAATTGATGAGCAATTCATGGCTGAAGTTGGTACACTTGGCAGGATTCATCATGTCAACTTGGTTCGTCTCCATGGTTTCTGCTTTGAGAGACACCTCAGAGCGCTTGTTTATGAGTATATGTCAAATGTTGGGACAGCTAGAGGGATTGCTTACTTGCACGAAGAATGGCAGCAGCGAATAGTCCACTACGATATAAAACCTGAAAATATTCTTTTGGATGTGAATTTCTTCCCCAAAGTTGCTGATTTCGGTTTGGCCAAGCTGTGCAACAGGGACAATACTCATATAACAATGACAGGTGGGAGGGGAACACCTGGTTATGCTGCACAAGAACTTTGGCTGGGGCTTCCTATAACCCACAAATGTGATGTGTACAGCTTTGGAATGCTGTTATTTGAGATTATAAGTAGAAGAAGGAACCTTGACCTTAATCTTCCAAAGAGCCAAGACTGGTTTCCAAGGTGGGGATGGAAGAAGTTTGAAGCTGGTGAACTAGGAGAACTAATGGTAGTATGTGGTATAGAGGAAAAAGATAGAGAGGCAGCAGAGAGAATGTTAAAGGTAGTTATCTGGTGTGTTCAGTATAGGTCCGAGTTGAGGCCTTTAATGAGTGTTGTGGTGAAGATGTTGGAAGGAGAAATTGAGATTCCTAGACCTTCAATTAACCCATTTCAGCACTTGATGCCAGGCACTCCTATCATGGCAGCATATAGCACTAGTGCATTCGACACTGATTCCTCACAAAATATAACTGGACATAGCTTGTTGCGTGGTACTCCTACCATGAAGAAATACGAAATTGAAATAGCATCTACTAGTGGCGGATCCAGATGCCATCTATTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

37.07

Weight (kDa)

7.66

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	33 - 89	1.8e-07	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	92 - 256	1.7e-18	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	92 - 189	3.5e-21	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012015)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10800 AT1G10800
fragaria_vesca	FvH4_4g12460
malus_domestica	MD04G1026300.v1.1
prunus_persica	Prupe.1G176000_v2.0.a1 Prupe.2G050500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0410771
rosa_laevigata	RLG00000008397
rosa_multiflora	Rmu_sc0009499.1_g000005
rosa_roxburghii	Rroxscaffold_5G00355520
rosa_rugosa	Rorug04G0110800 Rorug04G0110900 Rorug04G0110900 Rorug04G0111000
rosa_samantha	Rh4AG163000 Rh4BG162200 Rh4CG175900 Rh4DG158700
rosa_wichuraiana	Rw4G013590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	2 cut(s)	45, 963
AclWI	GGATC	2 cut(s)	960, 973
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	183
AfaI	GTAC	4 cut(s)	127, 172, 515, 916
AfeI	AGCGCT	1 cut(s)	243
AfiI	CCNNNNNNNGG	3 cut(s)	74, 605, 738
AgsI	TTSAA	3 cut(s)	623, 801, 944
AhlI	ACTAGT	2 cut(s)	857, 956
AjnI	CCWGG	2 cut(s)	454, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	579, 611
AleI	CACNNNNGTG	1 cut(s)	504
AluBI	AGCT	5 cut(s)	278, 403, 519, 626, 903
AluI	AGCT	5 cut(s)	278, 403, 519, 626, 903
Alw26I	GTCTC	2 cut(s)	212, 223
AlwI	GGATC	2 cut(s)	960, 973
Aor51HI	AGCGCT	1 cut(s)	243
AoxI	GGCC	2 cut(s)	396, 740
ApeKI	GCWGC	6 cut(s)	47, 310, 313, 464, 683, 845
ApoI	RAATTY	1 cut(s)	364
Asp700I	GAANNNNTTC	2 cut(s)	348, 368
Asp718I	GGTACC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	1 cut(s)	729
AsuHPI	GGTGA	2 cut(s)	641, 772
AvaII	GGWCC	1 cut(s)	729
BalI	TGGCCA	1 cut(s)	398
BamHI	GGATCC	1 cut(s)	965
BanI	GGYRCC	1 cut(s)	125
BbvI	GCAGC	6 cut(s)	34, 322, 325, 451, 695, 857
BccI	CCATC	2 cut(s)	603, 984
BceAI	ACGGC	3 cut(s)	5, 17, 41
BciT130I	CCWGG	2 cut(s)	456, 828
BcoDI	GTCTC	2 cut(s)	212, 223
BcuI	ACTAGT	2 cut(s)	857, 956
BfaI	CTAG	5 cut(s)	279, 635, 792, 858, 957
BfoI	RGCGCY	1 cut(s)	245
BisI	GCNGC	7 cut(s)	45, 48, 311, 314, 465, 684, 846
BlsI	GCNGC	7 cut(s)	46, 49, 312, 315, 466, 685, 847
Bme1390I	CCNGG	2 cut(s)	456, 828
Bme18I	GGWCC	1 cut(s)	729
BmgT120I	GGNCC	1 cut(s)	729
BmiI	GGNNCC	3 cut(s)	127, 560, 967
BmrFI	CCNGG	2 cut(s)	456, 828
BmsI	GCATC	3 cut(s)	813, 959, 962
BsaJI	CCNNGG	3 cut(s)	129, 211, 599
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 605, 738
Bse1I	ACTGG	2 cut(s)	596, 898
BseBI	CCWGG	2 cut(s)	456, 828
BseDI	CCNNGG	3 cut(s)	129, 211, 599
BseGI	GGATG	2 cut(s)	364, 614
BseLI	CCNNNNNNNGG	3 cut(s)	74, 605, 738
BseMII	CTCAG	1 cut(s)	250
BseNI	ACTGG	2 cut(s)	596, 898
BseXI	GCAGC	6 cut(s)	34, 322, 325, 451, 695, 857
BseYI	CCCAGC	1 cut(s)	481
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	2 cut(s)	398, 742
BshNI	GGYRCC	1 cut(s)	125
BslFI	GGGAC	2 cut(s)	286, 428
BslI	CCNNNNNNNGG	3 cut(s)	74, 605, 738
BsmAI	GTCTC	2 cut(s)	212, 223
BsmBI	CGTCTC	1 cut(s)	212
BsmFI	GGGAC	2 cut(s)	286, 428
BsmI	GAATGC	2 cut(s)	531, 863
BsnI	GGCC	2 cut(s)	398, 742
Bsp1407I	TGTACA	1 cut(s)	513
Bsp143I	GATC	2 cut(s)	79, 965
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	2 cut(s)	45, 963
BspANI	GGCC	2 cut(s)	398, 742
BspCNI	CTCAG	1 cut(s)	249
BspLI	GGNNCC	3 cut(s)	127, 560, 967
BspPI	GGATC	2 cut(s)	960, 973
BspT107I	GGYRCC	1 cut(s)	125
BsrGI	TGTACA	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	596, 898
BssECI	CCNNGG	3 cut(s)	129, 211, 599
BssMI	GATC	2 cut(s)	79, 965
BssT1I	CCWWGG	2 cut(s)	211, 599
Bst2UI	CCWGG	2 cut(s)	456, 828
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstAUI	TGTACA	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	119, 236
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	364, 614
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	2 cut(s)	82, 968
BstMAI	GTCTC	2 cut(s)	212, 223
BstMBI	GATC	2 cut(s)	79, 965
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 53, 823
BstNI	CCWGG	2 cut(s)	456, 828
BstSCI	CCNGG	2 cut(s)	454, 826
BstV1I	GCAGC	6 cut(s)	34, 322, 325, 451, 695, 857
BstX2I	RGATCY	1 cut(s)	965
BstYI	RGATCY	1 cut(s)	965
BsuRI	GGCC	2 cut(s)	398, 742
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	364, 614
BtsIMutI	CAGTG	1 cut(s)	870
CfoI	GCGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	729
CsiI	ACCWGGT	1 cut(s)	454
Csp6I	GTAC	4 cut(s)	126, 171, 514, 915
CviAII	CATG	5 cut(s)	157, 191, 212, 841, 925
CviQI	GTAC	4 cut(s)	126, 171, 514, 915
DdeI	CTNAG	2 cut(s)	119, 236
DpnI	GATC	2 cut(s)	81, 967
DpnII	GATC	2 cut(s)	79, 965
EaeI	YGGCCR	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	978
Eco130I	CCWWGG	2 cut(s)	211, 599
Eco147I	AGGCCT	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	729
Eco47III	AGCGCT	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	183
EcoRII	CCWGG	2 cut(s)	454, 826
EcoT14I	CCWWGG	2 cut(s)	211, 599
ErhI	CCWWGG	2 cut(s)	211, 599
Esp3I	CGTCTC	1 cut(s)	212
FaeI	CATG	5 cut(s)	160, 194, 215, 844, 928
FaqI	GGGAC	2 cut(s)	286, 428
FatI	CATG	5 cut(s)	156, 190, 211, 840, 924
Fnu4HI	GCNGC	7 cut(s)	45, 48, 311, 314, 465, 684, 846
FokI	GGATG	2 cut(s)	371, 621
Fsp4HI	GCNGC	7 cut(s)	45, 48, 311, 314, 465, 684, 846
FspBI	CTAG	5 cut(s)	279, 635, 792, 858, 957
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	7 cut(s)	45, 48, 311, 314, 465, 684, 846
GsaI	CCCAGC	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	398, 742
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	5 cut(s)	160, 194, 215, 844, 928
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	3 cut(s)	184, 787, 875
HphI	GGTGA	2 cut(s)	641, 772
Hpy166II	GTNNAC	5 cut(s)	173, 196, 325, 514, 632
Hpy188I	TCNGA	3 cut(s)	133, 239, 733
Hpy188III	TCNNGA	2 cut(s)	6, 969
Hpy8I	GTNNAC	5 cut(s)	173, 196, 325, 514, 632
HpyAV	CCTTC	4 cut(s)	106, 549, 767, 807
HpyCH4V	TGCA	4 cut(s)	298, 408, 467, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 53, 823
HpyF3I	CTNAG	2 cut(s)	119, 236
Hsp92II	CATG	5 cut(s)	160, 194, 215, 844, 928
HspAI	GCGC	1 cut(s)	242
KpnI	GGTACC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	79, 965
Lsp1109I	GCAGC	6 cut(s)	34, 322, 325, 451, 695, 857
LweI	GCATC	3 cut(s)	813, 959, 962
MabI	ACCWGGT	1 cut(s)	454
MaeI	CTAG	5 cut(s)	279, 635, 792, 858, 957
MalI	GATC	2 cut(s)	81, 967
MboI	GATC	2 cut(s)	79, 965
MboII	GAAGA	7 cut(s)	314, 361, 564, 566, 625, 775, 940
MflI	RGATCY	1 cut(s)	965
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	7 cut(s)	10, 141, 152, 364, 780, 801, 939
MluNI	TGGCCA	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	750
MnlI	CCTC	8 cut(s)	139, 245, 275, 438, 658, 673, 732, 889
Mox20I	TGGCCA	1 cut(s)	398
MroXI	GAANNNNTTC	2 cut(s)	348, 368
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	4 cut(s)	570, 698, 746, 804
MslI	CAYNNNNRTG	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	47
MspR9I	CCNGG	2 cut(s)	456, 828
Mva1269I	GAATGC	2 cut(s)	531, 863
MvaI	CCWGG	2 cut(s)	456, 828
MwoI	GCNNNNNNNGC	3 cut(s)	44, 53, 823
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	2 cut(s)	79, 965
NlaIII	CATG	5 cut(s)	160, 194, 215, 844, 928
NlaIV	GGNNCC	3 cut(s)	127, 560, 967
NmeAIII	GCCGAG	1 cut(s)	93
OliI	CACNNNNGTG	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	742
PctI	GAATGC	2 cut(s)	531, 863
PdmI	GAANNNNTTC	2 cut(s)	348, 368
PfeI	GAWTC	3 cut(s)	184, 787, 875
PkrI	GCNGC	7 cut(s)	46, 49, 312, 315, 466, 685, 847
PsiI	TTATAA	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	454, 826
PspFI	CCCAGC	1 cut(s)	481
PspGI	CCWGG	2 cut(s)	454, 826
PspN4I	GGNNCC	3 cut(s)	127, 560, 967
PspPI	GGNCC	1 cut(s)	729
PsuI	RGATCY	1 cut(s)	965
RsaI	GTAC	4 cut(s)	127, 172, 515, 916
RsaNI	GTAC	4 cut(s)	126, 171, 514, 915
RseI	CAYNNNNRTG	1 cut(s)	504
SaqAI	TTAA	4 cut(s)	570, 698, 746, 804
SatI	GCNGC	7 cut(s)	45, 48, 311, 314, 465, 684, 846
Sau3AI	GATC	2 cut(s)	79, 965
Sau96I	GGNCC	1 cut(s)	729
ScrFI	CCNGG	2 cut(s)	456, 828
SexAI	ACCWGGT	1 cut(s)	454
SfaNI	GCATC	3 cut(s)	813, 959, 962
SinI	GGWCC	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	504
SpeI	ACTAGT	2 cut(s)	857, 956
Sse9I	AATT	7 cut(s)	10, 141, 152, 364, 780, 801, 939
SseBI	AGGCCT	1 cut(s)	742
SsiI	CCGC	2 cut(s)	45, 963
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	5 cut(s)	279, 635, 792, 858, 957
StuI	AGGCCT	1 cut(s)	742
StyD4I	CCNGG	2 cut(s)	454, 826
StyI	CCWWGG	2 cut(s)	211, 599
TaqI	TCGA	2 cut(s)	5, 867
TasI	AATT	7 cut(s)	10, 141, 152, 364, 780, 801, 939
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	3 cut(s)	184, 787, 875
Tru1I	TTAA	4 cut(s)	570, 698, 746, 804
Tru9I	TTAA	4 cut(s)	570, 698, 746, 804
TscAI	CASTG	1 cut(s)	877
TseI	GCWGC	6 cut(s)	47, 310, 313, 464, 683, 845
TspDTI	ATGAA	3 cut(s)	145, 176, 941
TspRI	CASTG	1 cut(s)	877
VpaK11BI	GGWCC	1 cut(s)	729
XapI	RAATTY	1 cut(s)	364
XcmI	CCANNNNNNNNNTGG	1 cut(s)	606
XmnI	GAANNNNTTC	2 cut(s)	348, 368
XspI	CTAG	5 cut(s)	279, 635, 792, 858, 957

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.