Rmu_sc0009499.1_g000005

Voltage-gated hydrogen channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009499.1
OG0012015
Physical Location & Seq
Reverse (-)
37727 .. 39683
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009499.1_g000005.1.cds

Sequence Viewer

Length: 1071 bp
atggcattcatcgtgaccccaaagcataaggacgtcaagcttgcacttcacgtatcaatatcattcaccaagaatgggtcctcctctcaaatccagcaacagagaccttccacagcaaactcattctctatagagtctgtcgaatcctcgatacgaagtctgttaaggagctggtacagacggcagaaatggcaagttttattcaactccacaccaccacaagaacttgatagagctccatggagaacccatctggccagtttccttgaatccacaccagttcatgcagtttctctcggtctcctcattatcgatctcatcttcaccatccttgaactctcctcatctttacttgctaccagttgcaggccaaacgagaaccacaaagctacagaagaaatctggtaccactgggttggcgttgctattcttactctgctttcggcaaagactattgcccttgctgtggggctcggcaccacattctttaggcgtccgggttatgtcattgatgggatcgttttgatgggcgcgttggggttagaagtgtttttagacaagatagggggtgggttgcttgttgtggtcagtttgtggcgagttgttagggtagtagaaagtgcatttgagctgagtgatgaggccattgaagcacagattgaagggctggtgtgccagtttgagatgttgagggaagagaataggagactgttagaaaccattggtgagaaagatcagattatccagaagctccaggaagattcagatcaatgtacatgggacaaatggtatcaactatcaagtatcaacatagcagtatctctcctttggcccagacacaagttgattgttatggcttttggtggtggcttgagatcttgcgtaggagcagaatttggtagggtgcagatggctgtatttgtccattgcttagtcacaaagtacaggtgggaagtgattggaggaaaaatagtccaaaatcctggtatacaacttccaggtggttttcacttccggatacagcagaaagatacaaggaacagcaaacagcatataactccagatacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

40.09

Weight (kDa)

8.55

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10800 AT1G10800
fragaria_vesca FvH4_4g12460
malus_domestica MD04G1026300.v1.1
prunus_persica Prupe.1G176000_v2.0.a1 Prupe.2G050500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0410771
rosa_laevigata RLG00000008397
rosa_multiflora Rmu_sc0009499.1_g000005
rosa_roxburghii Rroxscaffold_5G00355520
rosa_rugosa Rorug04G0110800 Rorug04G0110900 Rorug04G0110900 Rorug04G0111000
rosa_samantha Rh4AG163000 Rh4BG162200 Rh4CG175900 Rh4DG158700
rosa_wichuraiana Rw4G013590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 36
Acc65I GGTACC 1 cut(s) 405
AccB1I GGYRCC 2 cut(s) 405, 476
AccI GTMKAC 1 cut(s) 988
AccII CGCG 1 cut(s) 533
AccIII TCCGGA 1 cut(s) 1014
AclWI GGATC 1 cut(s) 524
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 1 cut(s) 893
AcyI GRCGYC 2 cut(s) 33, 493
AfaI GTAC 4 cut(s) 176, 407, 775, 944
AfiI CCNNNNNNNGG 3 cut(s) 75, 366, 466
AgsI TTSAA 5 cut(s) 205, 269, 335, 650, 662
AjnI CCWGG 3 cut(s) 753, 982, 997
AluBI AGCT 6 cut(s) 40, 171, 236, 389, 631, 751
AluI AGCT 6 cut(s) 40, 171, 236, 389, 631, 751
Alw21I GWGCWC 1 cut(s) 238
Alw26I GTCTC 3 cut(s) 97, 305, 700
AlwI GGATC 1 cut(s) 524
Aor13HI TCCGGA 1 cut(s) 1014
AoxI GGCC 4 cut(s) 255, 368, 642, 830
ApoI RAATTY 1 cut(s) 893
Asp718I GGTACC 1 cut(s) 405
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 2 cut(s) 78, 831
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 3 cut(s) 58, 316, 737
AvaII GGWCC 1 cut(s) 78
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 2 cut(s) 405, 476
BanII GRGCYC 2 cut(s) 238, 474
Bbv12I GWGCWC 1 cut(s) 238
BccI CCATC 5 cut(s) 258, 335, 506, 520, 904
BceAI ACGGC 1 cut(s) 197
BciT130I CCWGG 3 cut(s) 755, 984, 999
BciVI GTATCC 1 cut(s) 1011
BcnI CCSGG 1 cut(s) 498
BcoDI GTCTC 3 cut(s) 97, 305, 700
BfmI CTRYAG 2 cut(s) 129, 390
BfuI GTATCC 1 cut(s) 1011
BglII AGATCT 1 cut(s) 875
Bme1390I CCNGG 4 cut(s) 498, 755, 984, 999
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 2 cut(s) 78, 831
BmiI GGNNCC 3 cut(s) 79, 407, 478
BmrFI CCNGG 4 cut(s) 498, 755, 984, 999
BmrI ACTGGG 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 421
BpmI CTGGAG 2 cut(s) 737, 1044
BpuEI CTTGAG 1 cut(s) 892
BpuMI CCSGG 1 cut(s) 498
Bsa29I ATCGAT 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 52
BsaBI GATNNNNATC 1 cut(s) 765
BsaHI GRCGYC 2 cut(s) 33, 493
BsaI GGTCTC 2 cut(s) 97, 305
BsaJI CCNNGG 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 1014
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 366, 466
Bse1I ACTGG 5 cut(s) 258, 278, 360, 416, 676
Bse3DI GCAATG 1 cut(s) 925
Bse8I GATNNNNATC 1 cut(s) 765
BseAI TCCGGA 1 cut(s) 1014
BseBI CCWGG 3 cut(s) 755, 984, 999
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 327
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 3 cut(s) 75, 366, 466
BseMI GCAATG 1 cut(s) 925
BseMII CTCAG 1 cut(s) 623
BseNI ACTGG 5 cut(s) 258, 278, 360, 416, 676
BseRI GAGGAG 3 cut(s) 73, 293, 331
BsgI GTGCAG 1 cut(s) 926
Bsh1236I CGCG 1 cut(s) 533
BshFI GGCC 4 cut(s) 257, 370, 644, 832
BshNI GGYRCC 2 cut(s) 405, 476
BshVI ATCGAT 1 cut(s) 312
BsiHKAI GWGCWC 1 cut(s) 238
BsiSI CCGG 2 cut(s) 497, 1015
BslFI GGGAC 1 cut(s) 794
BslI CCNNNNNNNGG 3 cut(s) 75, 366, 466
BsmAI GTCTC 3 cut(s) 97, 305, 700
BsmFI GGGAC 1 cut(s) 794
BsmI GAATGC 1 cut(s) 5
BsnI GGCC 4 cut(s) 257, 370, 644, 832
Bso31I GGTCTC 2 cut(s) 97, 305
Bsp1286I GDGCHC 2 cut(s) 238, 474
Bsp13I TCCGGA 1 cut(s) 1014
Bsp1407I TGTACA 1 cut(s) 773
Bsp143I GATC 5 cut(s) 313, 516, 733, 766, 875
Bsp19I CCATGG 1 cut(s) 239
BspANI GGCC 4 cut(s) 257, 370, 644, 832
BspCNI CTCAG 1 cut(s) 624
BspDI ATCGAT 1 cut(s) 312
BspEI TCCGGA 1 cut(s) 1014
BspFNI CGCG 1 cut(s) 533
BspLI GGNNCC 3 cut(s) 79, 407, 478
BspPI GGATC 1 cut(s) 524
BspT107I GGYRCC 2 cut(s) 405, 476
BspTNI GGTCTC 2 cut(s) 97, 305
BsrDI GCAATG 1 cut(s) 925
BsrGI TGTACA 1 cut(s) 773
BsrI ACTGG 5 cut(s) 258, 278, 360, 416, 676
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 5 cut(s) 313, 516, 733, 766, 875
BssNAI GTATAC 1 cut(s) 989
BssNI GRCGYC 2 cut(s) 33, 493
BssT1I CCWWGG 1 cut(s) 239
Bst1107I GTATAC 1 cut(s) 989
Bst2UI CCWGG 3 cut(s) 755, 984, 999
Bst4CI ACNGT 1 cut(s) 711
Bst6I CTCTTC 1 cut(s) 690
BstACI GRCGYC 2 cut(s) 33, 493
BstAUI TGTACA 1 cut(s) 773
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 42, 368
BstDEI CTNAG 2 cut(s) 632, 931
BstDSI CCRYGG 1 cut(s) 239
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 533
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 5 cut(s) 316, 519, 736, 769, 878
BstMAI GTCTC 3 cut(s) 97, 305, 700
BstMBI GATC 5 cut(s) 313, 516, 733, 766, 875
BstMWI GCNNNNNNNGC 2 cut(s) 190, 650
BstNI CCWGG 3 cut(s) 755, 984, 999
BstSCI CCNGG 4 cut(s) 496, 753, 982, 997
BstSFI CTRYAG 2 cut(s) 129, 390
BstUI CGCG 1 cut(s) 533
BstX2I RGATCY 1 cut(s) 875
BstXI CCANNNNNNTGG 2 cut(s) 416, 983
BstYI RGATCY 1 cut(s) 875
BstZ17I GTATAC 1 cut(s) 989
Bsu15I ATCGAT 1 cut(s) 312
BsuI GTATCC 1 cut(s) 1011
BsuRI GGCC 4 cut(s) 257, 370, 644, 832
BsuTUI ATCGAT 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 239
BtsCI GGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 42, 368
CfoI GCGC 1 cut(s) 533
Cfr13I GGNCC 2 cut(s) 78, 831
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 1 cut(s) 482
Csp6I GTAC 4 cut(s) 175, 406, 774, 943
CviAII CATG 3 cut(s) 240, 284, 777
CviQI GTAC 4 cut(s) 175, 406, 774, 943
DdeI CTNAG 2 cut(s) 632, 931
DpnI GATC 5 cut(s) 315, 518, 735, 768, 877
DpnII GATC 5 cut(s) 313, 516, 733, 766, 875
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
Ecl136II GAGCTC 1 cut(s) 236
Eco130I CCWWGG 1 cut(s) 239
Eco24I GRGCYC 2 cut(s) 238, 474
Eco31I GGTCTC 2 cut(s) 97, 305
Eco47I GGWCC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 78
EcoRII CCWGG 3 cut(s) 753, 982, 997
EcoT14I CCWWGG 1 cut(s) 239
EcoT38I GRGCYC 2 cut(s) 238, 474
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 3 cut(s) 243, 287, 780
FaqI GGGAC 1 cut(s) 794
FatI CATG 3 cut(s) 239, 283, 776
FblI GTMKAC 1 cut(s) 988
FokI GGATG 1 cut(s) 314
FriOI GRGCYC 2 cut(s) 238, 474
GlaI GCGC 1 cut(s) 532
GsuI CTGGAG 2 cut(s) 737, 1044
HaeIII GGCC 4 cut(s) 257, 370, 644, 832
HapII CCGG 2 cut(s) 497, 1015
HgaI GACGC 1 cut(s) 482
HhaI GCGC 1 cut(s) 533
Hin1I GRCGYC 2 cut(s) 33, 493
Hin1II CATG 3 cut(s) 243, 287, 780
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 4 cut(s) 134, 143, 269, 761
HpaII CCGG 2 cut(s) 497, 1015
HphI GGTGA 3 cut(s) 58, 316, 737
Hpy166II GTNNAC 1 cut(s) 989
Hpy188I TCNGA 2 cut(s) 738, 766
Hpy188III TCNNGA 4 cut(s) 13, 745, 1015, 1061
Hpy8I GTNNAC 1 cut(s) 989
HpyAV CCTTC 2 cut(s) 117, 656
HpyCH4III ACNGT 1 cut(s) 711
HpyCH4IV ACGT 2 cut(s) 33, 51
HpyCH4V TGCA 5 cut(s) 44, 287, 366, 623, 907
HpyF10VI GCNNNNNNNGC 2 cut(s) 190, 650
HpyF3I CTNAG 2 cut(s) 632, 931
HpySE526I ACGT 2 cut(s) 33, 51
Hsp92I GRCGYC 2 cut(s) 33, 493
Hsp92II CATG 3 cut(s) 243, 287, 780
HspAI GCGC 1 cut(s) 531
Kpn2I TCCGGA 1 cut(s) 1014
KpnI GGTACC 1 cut(s) 409
Kzo9I GATC 5 cut(s) 313, 516, 733, 766, 875
LmnI GCTCC 4 cut(s) 168, 241, 756, 887
MaeII ACGT 2 cut(s) 33, 51
MaeIII GTNAC 2 cut(s) 13, 934
MalI GATC 5 cut(s) 315, 518, 735, 768, 877
MboI GATC 5 cut(s) 313, 516, 733, 766, 875
MboII GAAGA 4 cut(s) 313, 407, 707, 770
MflI RGATCY 1 cut(s) 875
MhlI GDGCHC 2 cut(s) 238, 474
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 1 cut(s) 893
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 8 cut(s) 91, 94, 157, 314, 352, 634, 684, 956
Mox20I TGGCCA 1 cut(s) 257
MroI TCCGGA 1 cut(s) 1014
MscI TGGCCA 1 cut(s) 257
MseI TTAA 2 cut(s) 164, 1069
Msp20I TGGCCA 1 cut(s) 257
MspI CCGG 2 cut(s) 497, 1015
MspR9I CCNGG 4 cut(s) 498, 755, 984, 999
Mva1269I GAATGC 1 cut(s) 5
MvaI CCWGG 3 cut(s) 755, 984, 999
MvnI CGCG 1 cut(s) 533
MwoI GCNNNNNNNGC 2 cut(s) 190, 650
NciI CCSGG 1 cut(s) 498
NcoI CCATGG 1 cut(s) 239
NdeII GATC 5 cut(s) 313, 516, 733, 766, 875
NlaIII CATG 3 cut(s) 243, 287, 780
NlaIV GGNNCC 3 cut(s) 79, 407, 478
NmeAIII GCCGAG 1 cut(s) 453
NmuCI GTSAC 2 cut(s) 13, 934
PctI GAATGC 1 cut(s) 5
PfeI GAWTC 3 cut(s) 143, 269, 761
PfoI TCCNGGA 1 cut(s) 753
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
Ppu21I YACGTR 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 238
Psp5II RGGWCCY 1 cut(s) 78
Psp6I CCWGG 3 cut(s) 753, 982, 997
PspGI CCWGG 3 cut(s) 753, 982, 997
PspN4I GGNNCC 3 cut(s) 79, 407, 478
PspPI GGNCC 2 cut(s) 78, 831
PspPPI RGGWCCY 1 cut(s) 78
PsuI RGATCY 1 cut(s) 875
RsaI GTAC 4 cut(s) 176, 407, 775, 944
RsaNI GTAC 4 cut(s) 175, 406, 774, 943
SacI GAGCTC 1 cut(s) 238
SaqAI TTAA 2 cut(s) 164, 1069
Sau3AI GATC 5 cut(s) 313, 516, 733, 766, 875
Sau96I GGNCC 2 cut(s) 78, 831
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 4 cut(s) 498, 755, 984, 999
SduI GDGCHC 2 cut(s) 238, 474
SfcI CTRYAG 2 cut(s) 129, 390
SinI GGWCC 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 871
SmoI CTYRAG 1 cut(s) 871
Sse9I AATT 1 cut(s) 893
SstI GAGCTC 1 cut(s) 238
StyD4I CCNGG 4 cut(s) 496, 753, 982, 997
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 711
TaiI ACGT 2 cut(s) 36, 54
TaqI TCGA 3 cut(s) 141, 149, 312
TaqII GACCGA 1 cut(s) 287
TasI AATT 1 cut(s) 893
TatI WGTACW 2 cut(s) 773, 942
TfiI GAWTC 3 cut(s) 143, 269, 761
Tru1I TTAA 2 cut(s) 164, 1069
Tru9I TTAA 2 cut(s) 164, 1069
TscAI CASTG 1 cut(s) 416
TseFI GTSAC 2 cut(s) 13, 934
Tsp45I GTSAC 2 cut(s) 13, 934
TspDTI ATGAA 1 cut(s) 272
TspRI CASTG 1 cut(s) 416
VpaK11BI GGWCC 1 cut(s) 78
XapI RAATTY 1 cut(s) 893
XmiI GTMKAC 1 cut(s) 988
ZraI GACGTC 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.