Prupe.1G176000_v2.0.a1

Voltage-gated hydrogen channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012015
Physical Location & Seq
Forward (+)
14850721 .. 14852047
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G176000.1

Sequence Viewer

Length: 798 bp
ATGAAAATTGCCTCATCTCAGATTCAAATTCAACAACCTGGGCCTCCCACAACCACCACCACCACCACCACCACCACCAACTCATTCTCTATTGAATCCATTGAAGCCTCAATCCAAAGCCTCACAAGGAGCTGGCATAGAAGGCAACAATGGCACAGGTTTTTTTGGTTTGATAATAATAATTCCACACAATTTCAAGACCTAAATTTAGCCCCTTGGAGAACCCACTTGGCCAATTTTCTAGAGTCCACACCAATCCATGCGATTTCTATCTCCCTCCTCATTGTAGATCTCATCCTCACCATCCTTGAACTCTCCTCATCTTTGCTAACCGAGTGCAACAACTCACCAAACAAGAACAAAAAAACCACACCAGAAATTTGGTACCACTGGGTGGGCATTGCTATACTCGCCCTGCTTTCGGCAAAGACGGTGGCTCAAGCTGTGGGGCTTGGCATGCGTACGTTTCTCCGGAGGCGTCCCGGTTACGTCATTGACGGCGTCGTTTTGATGGGTGCGCTGGTTTTAGAAGCTTTTTTCGAGAGGAAGGGAGGGGGGCTGCTTGTTGTGGTGAGTTTGTGGCGTGTTGTTAGGGTTGTAGAGAGTGCTTTTGAGTTGAGTGATGAGGCCATTGAAGCGCAGATTCAAAGTGTTGTTTGCCAGTTTGAGATGCTCAAGGAAGAGAACAGGAGACTCGCAGAGACCATTAGTGAGCAGGACGAAATTATCGAGAAGCTCCAGGAAGATTTAGATCAATATTCTACTCGCTTTATGATCAACGGTTATCATAAACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

30.17

Weight (kDa)

5.9

Isoelectric Point (pI)

56.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10800 AT1G10800
fragaria_vesca FvH4_4g12460
malus_domestica MD04G1026300.v1.1
prunus_persica Prupe.1G176000_v2.0.a1 Prupe.2G050500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0410771
rosa_laevigata RLG00000008397
rosa_multiflora Rmu_sc0009499.1_g000005
rosa_roxburghii Rroxscaffold_5G00355520
rosa_rugosa Rorug04G0110800 Rorug04G0110900 Rorug04G0110900 Rorug04G0111000
rosa_samantha Rh4AG163000 Rh4BG162200 Rh4CG175900 Rh4DG158700
rosa_wichuraiana Rw4G013590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 384
AccB1I GGYRCC 1 cut(s) 384
AccB7I CCANNNNNTGG 1 cut(s) 394
AccIII TCCGGA 1 cut(s) 471
AcoI YGGCCR 1 cut(s) 231
AcsI RAATTY 3 cut(s) 27, 205, 378
AcyI GRCGYC 2 cut(s) 478, 501
AdeI CACNNNGTG 1 cut(s) 394
AfaI GTAC 2 cut(s) 386, 463
AfiI CCNNNNNNNGG 2 cut(s) 394, 421
AgsI TTSAA 8 cut(s) 26, 32, 95, 104, 197, 311, 635, 647
AjnI CCWGG 2 cut(s) 37, 738
AluBI AGCT 4 cut(s) 132, 443, 533, 736
AluI AGCT 4 cut(s) 132, 443, 533, 736
Alw26I GTCTC 2 cut(s) 685, 695
Aor13HI TCCGGA 1 cut(s) 471
AoxI GGCC 3 cut(s) 41, 231, 627
ApeKI GCWGC 1 cut(s) 559
ApoI RAATTY 3 cut(s) 27, 205, 378
Asp718I GGTACC 1 cut(s) 384
AspLEI GCGC 2 cut(s) 520, 640
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 483
AsuHPI GGTGA 3 cut(s) 292, 339, 583
BalI TGGCCA 1 cut(s) 233
BanI GGYRCC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 546
BccI CCATC 2 cut(s) 311, 505
BceAI ACGGC 1 cut(s) 514
BciT130I CCWGG 2 cut(s) 39, 740
BclI TGATCA 1 cut(s) 774
BcnI CCSGG 1 cut(s) 483
BcoDI GTCTC 2 cut(s) 685, 695
BfaI CTAG 1 cut(s) 242
BglII AGATCT 1 cut(s) 289
BisI GCNGC 1 cut(s) 560
BlsI GCNGC 1 cut(s) 561
Bme1390I CCNGG 3 cut(s) 39, 483, 740
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 1 cut(s) 386
BmrFI CCNGG 3 cut(s) 39, 483, 740
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 1 cut(s) 660
BmuI ACTGGG 1 cut(s) 400
BpmI CTGGAG 1 cut(s) 722
BpuEI CTTGAG 2 cut(s) 423, 659
BpuMI CCSGG 1 cut(s) 483
BsaBI GATNNNNATC 2 cut(s) 269, 750
BsaHI GRCGYC 2 cut(s) 478, 501
BsaI GGTCTC 1 cut(s) 695
BsaJI CCNNGG 2 cut(s) 38, 215
BsaWI WCCGGW 1 cut(s) 471
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 421
Bse1I ACTGG 2 cut(s) 395, 661
Bse3DI GCAATG 1 cut(s) 399
Bse8I GATNNNNATC 2 cut(s) 269, 750
BseAI TCCGGA 1 cut(s) 471
BseBI CCWGG 2 cut(s) 39, 740
BseDI CCNNGG 2 cut(s) 38, 215
BseGI GGATG 2 cut(s) 294, 303
BseJI GATNNNNATC 2 cut(s) 269, 750
BseLI CCNNNNNNNGG 2 cut(s) 394, 421
BseMI GCAATG 1 cut(s) 399
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 2 cut(s) 395, 661
BseRI GAGGAG 2 cut(s) 269, 307
BseXI GCAGC 1 cut(s) 546
BshFI GGCC 3 cut(s) 43, 233, 629
BshNI GGYRCC 1 cut(s) 384
BsiSI CCGG 2 cut(s) 472, 483
BsiWI CGTACG 1 cut(s) 461
BslFI GGGAC 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 394, 421
BsmAI GTCTC 2 cut(s) 685, 695
BsmFI GGGAC 1 cut(s) 465
BsnI GGCC 3 cut(s) 43, 233, 629
Bso31I GGTCTC 1 cut(s) 695
Bsp13I TCCGGA 1 cut(s) 471
Bsp143I GATC 3 cut(s) 289, 751, 774
BspANI GGCC 3 cut(s) 43, 233, 629
BspCNI CTCAG 1 cut(s) 31
BspEI TCCGGA 1 cut(s) 471
BspLI GGNNCC 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 384
BspTNI GGTCTC 1 cut(s) 695
BsrDI GCAATG 1 cut(s) 399
BsrI ACTGG 2 cut(s) 395, 661
BssECI CCNNGG 2 cut(s) 38, 215
BssMI GATC 3 cut(s) 289, 751, 774
BssNI GRCGYC 2 cut(s) 478, 501
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 39, 740
Bst4CI ACNGT 3 cut(s) 433, 782, 795
Bst6I CTCTTC 1 cut(s) 675
BstACI GRCGYC 2 cut(s) 478, 501
BstC8I GCNNGC 2 cut(s) 134, 458
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 294, 303
BstHHI GCGC 2 cut(s) 520, 640
BstKTI GATC 3 cut(s) 292, 754, 777
BstMAI GTCTC 2 cut(s) 685, 695
BstMBI GATC 3 cut(s) 289, 751, 774
BstMWI GCNNNNNNNGC 5 cut(s) 142, 151, 410, 457, 635
BstNI CCWGG 2 cut(s) 39, 740
BstNSI RCATGY 1 cut(s) 460
BstSCI CCNGG 3 cut(s) 37, 481, 738
BstV1I GCAGC 1 cut(s) 546
BstX2I RGATCY 1 cut(s) 289
BstXI CCANNNNNNTGG 1 cut(s) 381
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 3 cut(s) 43, 233, 629
BtsCI GGATG 2 cut(s) 294, 303
BtsIMutI CAGTG 1 cut(s) 388
Cac8I GCNNGC 2 cut(s) 134, 458
CfoI GCGC 2 cut(s) 520, 640
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 2 cut(s) 467, 490
Csp6I GTAC 2 cut(s) 385, 462
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CviAII CATG 2 cut(s) 260, 457
CviQI GTAC 2 cut(s) 385, 462
DdeI CTNAG 1 cut(s) 18
DpnI GATC 3 cut(s) 291, 753, 776
DpnII GATC 3 cut(s) 289, 751, 774
DraIII CACNNNGTG 1 cut(s) 394
EaeI YGGCCR 1 cut(s) 231
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 695
EcoRII CCWGG 2 cut(s) 37, 738
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
FaeI CATG 2 cut(s) 263, 460
FaiI YATR 6 cut(s) 138, 261, 407, 458, 773, 789
FaqI GGGAC 1 cut(s) 465
FatI CATG 2 cut(s) 259, 456
FbaI TGATCA 1 cut(s) 774
Fnu4HI GCNGC 1 cut(s) 560
FokI GGATG 2 cut(s) 281, 290
Fsp4HI GCNGC 1 cut(s) 560
FspBI CTAG 1 cut(s) 242
GlaI GCGC 2 cut(s) 519, 639
GluI GCNGC 1 cut(s) 560
GsuI CTGGAG 1 cut(s) 722
HaeIII GGCC 3 cut(s) 43, 233, 629
HapII CCGG 2 cut(s) 472, 483
HgaI GACGC 2 cut(s) 467, 490
HhaI GCGC 2 cut(s) 520, 640
Hin1I GRCGYC 2 cut(s) 478, 501
Hin1II CATG 2 cut(s) 263, 460
Hin6I GCGC 2 cut(s) 518, 638
HinP1I GCGC 2 cut(s) 518, 638
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 5 cut(s) 22, 95, 245, 643, 693
HpaII CCGG 2 cut(s) 472, 483
HphI GGTGA 3 cut(s) 292, 339, 583
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 5 cut(s) 197, 242, 472, 541, 730
Hpy8I GTNNAC 1 cut(s) 249
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 2 cut(s) 135, 541
HpyCH4III ACNGT 3 cut(s) 433, 782, 795
HpyCH4IV ACGT 2 cut(s) 464, 489
HpyCH4V TGCA 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 151, 410, 457, 635
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 2 cut(s) 464, 489
Hsp92I GRCGYC 2 cut(s) 478, 501
Hsp92II CATG 2 cut(s) 263, 460
HspAI GCGC 2 cut(s) 518, 638
Kpn2I TCCGGA 1 cut(s) 471
KpnI GGTACC 1 cut(s) 388
Ksp22I TGATCA 1 cut(s) 774
Kzo9I GATC 3 cut(s) 289, 751, 774
LmnI GCTCC 2 cut(s) 129, 741
Lsp1109I GCAGC 1 cut(s) 546
LweI GCATC 1 cut(s) 660
MaeI CTAG 1 cut(s) 242
MaeII ACGT 2 cut(s) 464, 489
MaeIII GTNAC 1 cut(s) 485
MalI GATC 3 cut(s) 291, 753, 776
MboI GATC 3 cut(s) 289, 751, 774
MboII GAAGA 2 cut(s) 692, 755
MflI RGATCY 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 233
MluCI AATT 8 cut(s) 6, 27, 181, 191, 205, 235, 378, 723
MluNI TGGCCA 1 cut(s) 233
MlyI GAGTC 2 cut(s) 254, 687
Mox20I TGGCCA 1 cut(s) 233
MroI TCCGGA 1 cut(s) 471
MscI TGGCCA 1 cut(s) 233
Msp20I TGGCCA 1 cut(s) 233
MspI CCGG 2 cut(s) 472, 483
MspR9I CCNGG 3 cut(s) 39, 483, 740
MvaI CCWGG 2 cut(s) 39, 740
MwoI GCNNNNNNNGC 5 cut(s) 142, 151, 410, 457, 635
NciI CCSGG 1 cut(s) 483
NdeII GATC 3 cut(s) 289, 751, 774
NlaIII CATG 2 cut(s) 263, 460
NlaIV GGNNCC 1 cut(s) 386
NspI RCATGY 1 cut(s) 460
PaeI GCATGC 1 cut(s) 460
PcsI WCGNNNNNNNCGW 1 cut(s) 726
PfeI GAWTC 3 cut(s) 22, 95, 643
Pfl23II CGTACG 1 cut(s) 461
PflFI GACNNNGTC 1 cut(s) 500
PflMI CCANNNNNTGG 1 cut(s) 394
PfoI TCCNGGA 1 cut(s) 738
PkrI GCNGC 1 cut(s) 561
PleI GAGTC 2 cut(s) 253, 687
PpsI GAGTC 2 cut(s) 253, 687
Psp6I CCWGG 2 cut(s) 37, 738
PspGI CCWGG 2 cut(s) 37, 738
PspLI CGTACG 1 cut(s) 461
PspN4I GGNNCC 1 cut(s) 386
PspPI GGNCC 1 cut(s) 41
PsuI RGATCY 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 500
RsaI GTAC 2 cut(s) 386, 463
RsaNI GTAC 2 cut(s) 385, 462
SatI GCNGC 1 cut(s) 560
Sau3AI GATC 3 cut(s) 289, 751, 774
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 2 cut(s) 254, 687
ScrFI CCNGG 3 cut(s) 39, 483, 740
SetI ASST 9 cut(s) 40, 134, 161, 204, 445, 467, 492, 535, 738
SfaNI GCATC 1 cut(s) 660
SmlI CTYRAG 2 cut(s) 438, 674
SmoI CTYRAG 2 cut(s) 438, 674
SphI GCATGC 1 cut(s) 460
Sse9I AATT 8 cut(s) 6, 27, 181, 191, 205, 235, 378, 723
SspI AATATT 1 cut(s) 758
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 3 cut(s) 37, 481, 738
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 3 cut(s) 433, 782, 795
TaiI ACGT 2 cut(s) 467, 492
TaqI TCGA 2 cut(s) 540, 729
TasI AATT 8 cut(s) 6, 27, 181, 191, 205, 235, 378, 723
TfiI GAWTC 3 cut(s) 22, 95, 643
TscAI CASTG 1 cut(s) 395
TseI GCWGC 1 cut(s) 559
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 395
Tth111I GACNNNGTC 1 cut(s) 500
Van91I CCANNNNNTGG 1 cut(s) 394
XapI RAATTY 3 cut(s) 27, 205, 378
XbaI TCTAGA 1 cut(s) 241
XceI RCATGY 1 cut(s) 460
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.