Rorug04G0110900

Voltage-gated hydrogen channel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012015
Physical Location & Seq
Forward (+)
17432607 .. 17434364
1758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0110900.1

Sequence Viewer

Length: 489 bp
ATGATTGGGGGCGGCAAGAGCTACGTCACAGCCCCACCGGCCTTCTCCAACGACGCCAAGCGCCTCCTCGTCTGCACCGGCAACGTCGTCTCCGCCTTCAGCACCTCCACCGGCTTACAGATACTGTCGTTGGAGGGCCACACGGCGTTGGTCACCGCCGTCATAGTGGTTCCCGGTAACAAAGCCCTCAGCTTCTGCTGGACGGCCTCGCTTGACGGCACCGTTAGGTATTGGGACTTTGCCGCCGCCGAGTTGATGAAGACCATTGATATCAAAATGCCAATTTACTCTATGGTTATTCCGGCATTGTTGTTGGGCCAAACGGATTCGAAGGTGATGCCGGCCGATGCTTTTGCTTATTTGTCTGTTGAAAACACCACCCAAGACAATGCACCCAAGGCTTTGCGTGGGCAGATTCGCAAGTGTAATTTGACTGAATCTCGATTGGCTGGTGTTATTCTCGCAGAGGCAATGGGATCTATTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.18

Weight (kDa)

7.71

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 14 - 94 7.8e-06 THOC3 beta-propeller domain
Beta-prop_WDR75_1st PF23869 15 - 100 9.5e-18 WD repeat-containing protein 75 first beta-propeller
WD40_WDHD1_1st PF24817 15 - 102 1.2e-06 WDHD1 first WD40 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012015)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10800 AT1G10800
fragaria_vesca FvH4_4g12460
malus_domestica MD04G1026300.v1.1
prunus_persica Prupe.1G176000_v2.0.a1 Prupe.2G050500_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0410771
rosa_laevigata RLG00000008397
rosa_multiflora Rmu_sc0009499.1_g000005
rosa_roxburghii Rroxscaffold_5G00355520
rosa_rugosa Rorug04G0110800 Rorug04G0110900 Rorug04G0110900 Rorug04G0111000
rosa_samantha Rh4AG163000 Rh4BG162200 Rh4CG175900 Rh4DG158700
rosa_wichuraiana Rw4G013590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 218
AciI CCGC 5 cut(s) 12, 93, 156, 243, 246
AclWI GGATC 1 cut(s) 484
AcoI YGGCCR 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 54
AgsI TTSAA 1 cut(s) 371
AluBI AGCT 2 cut(s) 21, 192
AluI AGCT 2 cut(s) 21, 192
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 484
AlwNI CAGNNNCTG 2 cut(s) 124, 195
AoxI GGCC 5 cut(s) 39, 136, 204, 316, 342
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 136, 316
AsuC2I CCSGG 1 cut(s) 174
AsuHPI GGTGA 2 cut(s) 145, 346
AsuII TTCGAA 1 cut(s) 329
BaeI ACNNNNGTAYC 2 cut(s) 113, 146
BanI GGYRCC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 266
BbvCI CCTCAGC 1 cut(s) 188
BceAI ACGGC 4 cut(s) 143, 159, 219, 232
BcgI CGANNNNNNTGC 4 cut(s) 319, 335, 353, 369
BcnI CCSGG 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 94
BfoI RGCGCY 1 cut(s) 64
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 3 cut(s) 13, 243, 246
BlsI GCNGC 3 cut(s) 14, 244, 247
Bme1390I CCNGG 1 cut(s) 174
BmgT120I GGNCC 2 cut(s) 136, 316
BmiI GGNNCC 2 cut(s) 171, 220
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 2 cut(s) 327, 337
BpiI GAAGAC 1 cut(s) 266
Bpu10I CCTNAGC 1 cut(s) 188
Bpu14I TTCGAA 1 cut(s) 329
BpuMI CCSGG 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 396
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse118I RCCGGY 4 cut(s) 37, 77, 110, 340
Bse3DI GCAATG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 396
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 56
BseX3I CGGCCG 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 58
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 5 cut(s) 41, 138, 206, 318, 344
BshNI GGYRCC 1 cut(s) 218
BsiEI CGRYCG 1 cut(s) 345
BsiSI CCGG 6 cut(s) 38, 78, 111, 174, 302, 341
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 94
BsmBI CGTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 5 cut(s) 41, 138, 206, 318, 344
Bsp119I TTCGAA 1 cut(s) 329
Bsp143I GATC 1 cut(s) 476
BspACI CCGC 5 cut(s) 12, 93, 156, 243, 246
BspANI GGCC 5 cut(s) 41, 138, 206, 318, 344
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 2 cut(s) 171, 220
BspPI GGATC 1 cut(s) 484
BspT104I TTCGAA 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 477
BsrFI RCCGGY 4 cut(s) 37, 77, 110, 340
BssAI RCCGGY 4 cut(s) 37, 77, 110, 340
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 1 cut(s) 476
BssNI GRCGYC 1 cut(s) 54
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 126, 223
BstACI GRCGYC 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 342
BstDEI CTNAG 1 cut(s) 188
BstEII GGTNACC 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 1 cut(s) 479
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 1 cut(s) 476
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 3 cut(s) 18, 38, 398
BstPI GGTNACC 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 266
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BstZI CGGCCG 1 cut(s) 342
BsuRI GGCC 5 cut(s) 41, 138, 206, 318, 344
Cac8I GCNNGC 1 cut(s) 342
CaiI CAGNNNCTG 2 cut(s) 124, 195
CfoI GCGC 1 cut(s) 63
Cfr10I RCCGGY 4 cut(s) 37, 77, 110, 340
Cfr13I GGNCC 2 cut(s) 136, 316
CseI GACGC 1 cut(s) 62
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 478
DpnII GATC 1 cut(s) 476
EaeI YGGCCR 1 cut(s) 342
EagI CGGCCG 1 cut(s) 342
EciI GGCGGA 1 cut(s) 82
EclXI CGGCCG 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 396
Eco32I GATATC 1 cut(s) 271
Eco52I CGGCCG 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 82
Eco91I GGTNACC 1 cut(s) 151
EcoO65I GGTNACC 1 cut(s) 151
EcoRV GATATC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
Esp3I CGTCTC 1 cut(s) 94
FaiI YATR 2 cut(s) 164, 293
FaqI GGGAC 1 cut(s) 248
Fnu4HI GCNGC 3 cut(s) 13, 243, 246
Fsp4HI GCNGC 3 cut(s) 13, 243, 246
GlaI GCGC 1 cut(s) 62
GluI GCNGC 3 cut(s) 13, 243, 246
HaeII RGCGCY 1 cut(s) 64
HaeIII GGCC 5 cut(s) 41, 138, 206, 318, 344
HapII CCGG 6 cut(s) 38, 78, 111, 174, 302, 341
HgaI GACGC 1 cut(s) 62
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 54
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 3 cut(s) 326, 415, 437
HpaII CCGG 6 cut(s) 38, 78, 111, 174, 302, 341
HphI GGTGA 2 cut(s) 145, 346
Hpy188III TCNNGA 1 cut(s) 441
Hpy99I CGWCG 2 cut(s) 56, 89
HpyAV CCTTC 3 cut(s) 52, 106, 325
HpyCH4III ACNGT 2 cut(s) 126, 223
HpyCH4IV ACGT 2 cut(s) 24, 84
HpyCH4V TGCA 2 cut(s) 75, 392
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 38, 398
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 2 cut(s) 24, 84
Hsp92I GRCGYC 1 cut(s) 54
HspAI GCGC 1 cut(s) 61
KroI GCCGGC 1 cut(s) 340
KroNI GCCGGC 1 cut(s) 342
Kzo9I GATC 1 cut(s) 476
LpnPI CCDG 8 cut(s) 51, 91, 124, 184, 187, 315, 354, 435
LweI GCATC 2 cut(s) 327, 337
MaeII ACGT 2 cut(s) 24, 84
MaeIII GTNAC 3 cut(s) 25, 151, 176
MalI GATC 1 cut(s) 478
MboI GATC 1 cut(s) 476
MboII GAAGA 1 cut(s) 271
MflI RGATCY 1 cut(s) 476
MluCI AATT 2 cut(s) 282, 427
MmeI TCCRAC 2 cut(s) 72, 111
MnlI CCTC 7 cut(s) 74, 77, 115, 127, 197, 217, 460
MroNI GCCGGC 1 cut(s) 340
MspI CCGG 6 cut(s) 38, 78, 111, 174, 302, 341
MspR9I CCNGG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 18, 38, 398
NaeI GCCGGC 1 cut(s) 342
NciI CCSGG 1 cut(s) 174
NdeII GATC 1 cut(s) 476
NgoMIV GCCGGC 1 cut(s) 340
NlaIV GGNNCC 2 cut(s) 171, 220
NmeAIII GCCGAG 1 cut(s) 274
NmuCI GTSAC 2 cut(s) 25, 151
NspV TTCGAA 1 cut(s) 329
PdiI GCCGGC 1 cut(s) 342
PfeI GAWTC 3 cut(s) 326, 415, 437
PkrI GCNGC 3 cut(s) 14, 244, 247
PspEI GGTNACC 1 cut(s) 151
PspN4I GGNNCC 2 cut(s) 171, 220
PspPI GGNCC 2 cut(s) 136, 316
PstNI CAGNNNCTG 2 cut(s) 124, 195
PsuI RGATCY 1 cut(s) 476
SatI GCNGC 3 cut(s) 13, 243, 246
Sau3AI GATC 1 cut(s) 476
Sau96I GGNCC 2 cut(s) 136, 316
ScrFI CCNGG 1 cut(s) 174
SetI ASST 7 cut(s) 23, 27, 87, 107, 194, 230, 336
SfaNI GCATC 2 cut(s) 327, 337
SfuI TTCGAA 1 cut(s) 329
Sse9I AATT 2 cut(s) 282, 427
SsiI CCGC 5 cut(s) 12, 93, 156, 243, 246
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 126, 223
TaiI ACGT 2 cut(s) 27, 87
TaqI TCGA 2 cut(s) 329, 442
TasI AATT 2 cut(s) 282, 427
TauI GCSGC 3 cut(s) 15, 245, 248
TfiI GAWTC 3 cut(s) 326, 415, 437
TseFI GTSAC 2 cut(s) 25, 151
Tsp45I GTSAC 2 cut(s) 25, 151
TspDTI ATGAA 1 cut(s) 272
TspGWI ACGGA 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.