FvH4_4g16740

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015284
Physical Location & Seq
Reverse (-)
20602645 .. 20603169
525 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16740.t1

Sequence Viewer

Length: 525 bp
ATGGGGACCGAGATTTTAAGACCGCAGGATTGTCTGGTCGAGAGAATCAGAGTCTCTCCGGCGTTTTCACGGCCGAGCAGTTATAATAACTATTACAGAAATGGGCCCATTCCTGTGCAGCAGCAACGTAGATCTGGAAAGCCGGCAGTGCGGGCCGAGCAGCGCAGGCCGGAGCCGGCGGCGCTGGTCTCGAAGAGGTCTGGCCAGTCGAGCTCGGATGATTTGATGAAGGCGGAGAAGGTGACGATTTTGAGGCGGGGGGAGCCGCTGAGCCGGATGAAAAAGGCGGCGAGCGATGGAAGGTTGGAGAGGCTGGGGCCGGGGTCGACTGTGGTGCCGAAGGAGGTGAGGATTGTGGATTTGAGGACTCCGGTGATCGACATGTATGCCGGATCGGCTTTTGCGATGTCGCCGGAGCCGAGCTCGCTGCCGTTGCCGTCGTTCTCGACAAAGAAGAAGCAGGCGTCGAGGAGTTTTGACGACTCGGCCACCCGAGACCTGAGGCGTTTGCTTCGGCTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

175

Amino Acids

19.44

Weight (kDa)

10.59

Isoelectric Point (pI)

88.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 129 - 148 2.7e-08 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21570
fragaria_vesca FvH4_4g16740
malus_domestica MD03G1009700.v1.1
prunus_persica Prupe.1G145900_v2.0.a1
pyrus_communis pycom02g14100 pycom13g15250 pycom16g15000
rosa_chinensis RchiOBHm_Chr4g0420321
rosa_laevigata RLG00000007774
rosa_multiflora Rmu_sc0001767.1_g000003
rosa_roxburghii Rroxscaffold_5G00362970
rosa_rugosa Rorug04G0163400
rosa_samantha Rh4BG227300 Rh4CG238500 Rh4DG222900
rosa_wichuraiana Rw4G019350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AccB1I GGYRCC 1 cut(s) 334
AccI GTMKAC 1 cut(s) 326
AciI CCGC 7 cut(s) 23, 151, 179, 233, 256, 266, 287
AclWI GGATC 1 cut(s) 400
AcoI YGGCCR 3 cut(s) 71, 202, 486
AcyI GRCGYC 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 381
AluBI AGCT 2 cut(s) 213, 423
AluI AGCT 2 cut(s) 213, 423
Alw21I GWGCWC 2 cut(s) 215, 425
Alw26I GTCTC 3 cut(s) 58, 193, 489
AlwI GGATC 1 cut(s) 400
Ama87I CYCGRG 1 cut(s) 492
AoxI GGCC 7 cut(s) 71, 104, 153, 167, 202, 317, 486
ApaI GGGCCC 1 cut(s) 108
ApeKI GCWGC 4 cut(s) 118, 121, 160, 427
AspLEI GCGC 2 cut(s) 165, 184
AspS9I GGNCC 5 cut(s) 6, 104, 105, 153, 317
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 3 cut(s) 253, 358, 385
AvaI CYCGRG 1 cut(s) 492
AvaII GGWCC 1 cut(s) 6
AxyI CCTNAGG 1 cut(s) 500
BaeGI GKGCMC 1 cut(s) 108
BalI TGGCCA 1 cut(s) 204
BanI GGYRCC 1 cut(s) 334
BanII GRGCYC 3 cut(s) 108, 215, 425
Bbv12I GWGCWC 2 cut(s) 215, 425
BbvI GCAGC 4 cut(s) 130, 133, 172, 414
BccI CCATC 1 cut(s) 290
BceAI ACGGC 3 cut(s) 86, 415, 421
BcgI CGANNNNNNTGC 6 cut(s) 316, 350, 368, 402, 409, 443
BcnI CCSGG 1 cut(s) 321
BcoDI GTCTC 3 cut(s) 58, 193, 489
BfoI RGCGCY 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 395
BglII AGATCT 1 cut(s) 131
BisI GCNGC 7 cut(s) 119, 122, 161, 180, 266, 288, 428
BlpI GCTNAGC 1 cut(s) 269
BlsI GCNGC 7 cut(s) 120, 123, 162, 181, 267, 289, 429
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 6
BmeT110I CYCGRG 1 cut(s) 492
BmgT120I GGNCC 5 cut(s) 6, 104, 105, 153, 317
BmiI GGNNCC 7 cut(s) 7, 106, 174, 264, 318, 336, 417
BmrFI CCNGG 1 cut(s) 321
BplI GAGNNNNNCTC 2 cut(s) 407, 439
Bpu1102I GCTNAGC 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 464
BsaI GGTCTC 2 cut(s) 193, 489
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 370
Bse118I RCCGGY 2 cut(s) 142, 175
Bse1I ACTGG 1 cut(s) 205
Bse21I CCTNAGG 1 cut(s) 500
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 2 cut(s) 223, 282
BseMII CTCAG 2 cut(s) 260, 491
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 484
BseSI GKGCMC 1 cut(s) 108
BseX3I CGGCCG 1 cut(s) 71
BseXI GCAGC 4 cut(s) 130, 133, 172, 414
BseYI CCCAGC 1 cut(s) 313
BsgI GTGCAG 1 cut(s) 137
Bsh1285I CGRYCG 1 cut(s) 74
BshFI GGCC 7 cut(s) 73, 106, 155, 169, 204, 319, 488
BshNI GGYRCC 1 cut(s) 334
BsiEI CGRYCG 1 cut(s) 74
BsiHKAI GWGCWC 2 cut(s) 215, 425
BsiHKCI CYCGRG 1 cut(s) 492
BsiSI CCGG 9 cut(s) 59, 143, 170, 176, 274, 320, 371, 390, 413
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 3 cut(s) 58, 193, 489
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 7 cut(s) 73, 106, 155, 169, 204, 319, 488
Bso31I GGTCTC 2 cut(s) 193, 489
BsoBI CYCGRG 1 cut(s) 492
Bsp120I GGGCCC 1 cut(s) 104
Bsp1286I GDGCHC 3 cut(s) 108, 215, 425
Bsp143I GATC 3 cut(s) 131, 375, 392
Bsp1720I GCTNAGC 1 cut(s) 269
BspACI CCGC 7 cut(s) 23, 151, 179, 233, 256, 266, 287
BspANI GGCC 7 cut(s) 73, 106, 155, 169, 204, 319, 488
BspCNI CTCAG 2 cut(s) 261, 492
BspLI GGNNCC 7 cut(s) 7, 106, 174, 264, 318, 336, 417
BspPI GGATC 1 cut(s) 400
BspT107I GGYRCC 1 cut(s) 334
BspTNI GGTCTC 2 cut(s) 193, 489
BsrFI RCCGGY 2 cut(s) 142, 175
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 2 cut(s) 142, 175
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 3 cut(s) 131, 375, 392
BssNI GRCGYC 1 cut(s) 464
Bst4CI ACNGT 1 cut(s) 331
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 464
BstC8I GCNNGC 7 cut(s) 144, 153, 167, 177, 292, 425, 462
BstDEI CTNAG 2 cut(s) 269, 500
BstF5I GGATG 2 cut(s) 223, 282
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 2 cut(s) 165, 184
BstKTI GATC 3 cut(s) 134, 378, 395
BstMAI GTCTC 3 cut(s) 58, 193, 489
BstMBI GATC 3 cut(s) 131, 375, 392
BstMCI CGRYCG 1 cut(s) 74
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 1 cut(s) 319
BstSLI GKGCMC 1 cut(s) 108
BstV1I GCAGC 4 cut(s) 130, 133, 172, 414
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BstZI CGGCCG 1 cut(s) 71
Bsu36I CCTNAGG 1 cut(s) 500
BsuRI GGCC 7 cut(s) 73, 106, 155, 169, 204, 319, 488
BtgZI GCGATG 2 cut(s) 309, 419
BtsCI GGATG 2 cut(s) 223, 282
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 7 cut(s) 144, 153, 167, 177, 292, 425, 462
CfoI GCGC 2 cut(s) 165, 184
Cfr10I RCCGGY 2 cut(s) 142, 175
Cfr13I GGNCC 5 cut(s) 6, 104, 105, 153, 317
CseI GACGC 1 cut(s) 453
CviAII CATG 1 cut(s) 382
DdeI CTNAG 2 cut(s) 269, 500
DpnI GATC 3 cut(s) 133, 377, 394
DpnII GATC 3 cut(s) 131, 375, 392
EaeI YGGCCR 3 cut(s) 71, 202, 486
EagI CGGCCG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
EciI GGCGGA 1 cut(s) 248
Ecl136II GAGCTC 2 cut(s) 213, 423
EclXI CGGCCG 1 cut(s) 71
Eco24I GRGCYC 3 cut(s) 108, 215, 425
Eco31I GGTCTC 2 cut(s) 193, 489
Eco47I GGWCC 1 cut(s) 6
Eco52I CGGCCG 1 cut(s) 71
Eco53kI GAGCTC 2 cut(s) 213, 423
Eco81I CCTNAGG 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 492
EcoICRI GAGCTC 2 cut(s) 213, 423
EcoT38I GRGCYC 3 cut(s) 108, 215, 425
FaeI CATG 1 cut(s) 385
FaiI YATR 3 cut(s) 84, 383, 387
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 381
FauI CCCGC 2 cut(s) 144, 249
FblI GTMKAC 1 cut(s) 326
Fnu4HI GCNGC 7 cut(s) 119, 122, 161, 180, 266, 288, 428
FokI GGATG 2 cut(s) 230, 289
FriOI GRGCYC 3 cut(s) 108, 215, 425
Fsp4HI GCNGC 7 cut(s) 119, 122, 161, 180, 266, 288, 428
GlaI GCGC 2 cut(s) 164, 183
GluI GCNGC 7 cut(s) 119, 122, 161, 180, 266, 288, 428
GsaI CCCAGC 1 cut(s) 317
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 7 cut(s) 73, 106, 155, 169, 204, 319, 488
HapII CCGG 9 cut(s) 59, 143, 170, 176, 274, 320, 371, 390, 413
HgaI GACGC 1 cut(s) 453
HhaI GCGC 2 cut(s) 165, 184
Hin1I GRCGYC 1 cut(s) 464
Hin1II CATG 1 cut(s) 385
Hin6I GCGC 2 cut(s) 163, 182
HinP1I GCGC 2 cut(s) 163, 182
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HinfI GANTC 4 cut(s) 45, 51, 367, 482
HpaII CCGG 9 cut(s) 59, 143, 170, 176, 274, 320, 371, 390, 413
HphI GGTGA 3 cut(s) 253, 358, 385
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 2 cut(s) 50, 217
Hpy188III TCNNGA 4 cut(s) 40, 135, 190, 445
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 2 cut(s) 442, 469
HpyAV CCTTC 4 cut(s) 223, 232, 294, 334
HpyCH4III ACNGT 1 cut(s) 331
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 118
HpyF3I CTNAG 2 cut(s) 269, 500
HpySE526I ACGT 1 cut(s) 127
Hsp92I GRCGYC 1 cut(s) 464
Hsp92II CATG 1 cut(s) 385
HspAI GCGC 2 cut(s) 163, 182
KroI GCCGGC 2 cut(s) 142, 175
KroNI GCCGGC 2 cut(s) 144, 177
Kzo9I GATC 3 cut(s) 131, 375, 392
LmnI GCTCC 3 cut(s) 172, 262, 415
Lsp1109I GCAGC 4 cut(s) 130, 133, 172, 414
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 1 cut(s) 241
MalI GATC 3 cut(s) 133, 377, 394
MboI GATC 3 cut(s) 131, 375, 392
MboII GAAGA 2 cut(s) 205, 466
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 3 cut(s) 108, 215, 425
MlsI TGGCCA 1 cut(s) 204
MluNI TGGCCA 1 cut(s) 204
MlyI GAGTC 3 cut(s) 60, 361, 476
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 8 cut(s) 189, 246, 303, 337, 342, 357, 462, 495
Mox20I TGGCCA 1 cut(s) 204
MroNI GCCGGC 2 cut(s) 142, 175
MscI TGGCCA 1 cut(s) 204
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 113
Msp20I TGGCCA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 9 cut(s) 59, 143, 170, 176, 274, 320, 371, 390, 413
MspR9I CCNGG 1 cut(s) 321
NaeI GCCGGC 2 cut(s) 144, 177
NciI CCSGG 1 cut(s) 321
NdeII GATC 3 cut(s) 131, 375, 392
NgoMIV GCCGGC 2 cut(s) 142, 175
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 7 cut(s) 7, 106, 174, 264, 318, 336, 417
NmeAIII GCCGAG 4 cut(s) 99, 181, 444, 464
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 385
PciI ACATGT 1 cut(s) 381
PcsI WCGNNNNNNNCGW 2 cut(s) 401, 416
PdiI GCCGGC 2 cut(s) 144, 177
PfeI GAWTC 1 cut(s) 45
PkrI GCNGC 7 cut(s) 120, 123, 162, 181, 267, 289, 429
PleI GAGTC 3 cut(s) 59, 361, 476
PpsI GAGTC 3 cut(s) 59, 361, 476
PscI ACATGT 1 cut(s) 381
PsiI TTATAA 1 cut(s) 84
Psp124BI GAGCTC 2 cut(s) 215, 425
PspFI CCCAGC 1 cut(s) 313
PspN4I GGNNCC 7 cut(s) 7, 106, 174, 264, 318, 336, 417
PspOMI GGGCCC 1 cut(s) 104
PspPI GGNCC 5 cut(s) 6, 104, 105, 153, 317
PsuI RGATCY 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 2 cut(s) 215, 425
SalI GTCGAC 1 cut(s) 325
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 7 cut(s) 119, 122, 161, 180, 266, 288, 428
Sau3AI GATC 3 cut(s) 131, 375, 392
Sau96I GGNCC 5 cut(s) 6, 104, 105, 153, 317
SchI GAGTC 3 cut(s) 60, 361, 476
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 3 cut(s) 108, 215, 425
SetI ASST 8 cut(s) 130, 200, 215, 243, 305, 348, 425, 501
SinI GGWCC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 113
SsiI CCGC 7 cut(s) 23, 151, 179, 233, 256, 266, 287
SstI GAGCTC 2 cut(s) 215, 425
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 331
TaiI ACGT 1 cut(s) 130
TaqI TCGA 8 cut(s) 39, 191, 209, 326, 378, 446, 467, 519
TaqII GACCGA 1 cut(s) 23
TauI GCSGC 3 cut(s) 182, 268, 290
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 153
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 4 cut(s) 118, 121, 160, 427
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 2 cut(s) 242, 293
TspRI CASTG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 6
XceI RCATGY 1 cut(s) 385
XmiI GTMKAC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.