Rh4BG227300

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015284
Physical Location & Seq
Reverse (-)
39122014 .. 39124232
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG227300.1

Sequence Viewer

Length: 507 bp
ATGGGGACTGAGATCTTGAGGCCACAGGATTGTCTGATCGAGAGGATCCGAATCTCTCCGGCGAAGAGTAATTACTATGGAAATCCCATTCCCATTCATGTGGCTAGCAACGTTAGATCTAGAAAGCCGGCGGTGAGGCCGGAGCAGAGGTGGCCGGAGCCGCCGCCGGCGGTTTCGAGGAGGTCCGGCCGGTCCAGCTCCGATGATTTGAAGGTGGAGAAGGTGACGATTTTGAGGCGGGGAGAGCCGCTGAGCCGGTTGAAGAAGGCGGCGAGCGACGGCCGGTTGGAGAGGCTGGGGCCGGGGCCGACGGTGGTGCCGAAGGAGGTGAATATTGTGGATTTGAGGGCTCCGGCGACGGACATGTATGCCGGATCGGCTTTCTCGATGTCGCCGGAGCCGAGCTCGCTCCCGTTGCCGTCGTTCTCGAAGAAGAAGAAGCAGGCGTCGAGGAGCTTTGACGACTCGGCGACCAGAGACCTGAGGCGTTTGCTTCGGCTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

168

Amino Acids

18.71

Weight (kDa)

10.47

Isoelectric Point (pI)

93.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 123 - 142 1.1e-08 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21570
fragaria_vesca FvH4_4g16740
malus_domestica MD03G1009700.v1.1
prunus_persica Prupe.1G145900_v2.0.a1
pyrus_communis pycom02g14100 pycom13g15250 pycom16g15000
rosa_chinensis RchiOBHm_Chr4g0420321
rosa_laevigata RLG00000007774
rosa_multiflora Rmu_sc0001767.1_g000003
rosa_roxburghii Rroxscaffold_5G00362970
rosa_rugosa Rorug04G0163400
rosa_samantha Rh4BG227300 Rh4CG238500 Rh4DG222900
rosa_wichuraiana Rw4G019350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 316
AciI CCGC 7 cut(s) 131, 161, 164, 170, 238, 248, 269
AclI AACGTT 1 cut(s) 111
AclWI GGATC 3 cut(s) 40, 53, 382
AcoI YGGCCR 3 cut(s) 152, 187, 280
AcyI GRCGYC 1 cut(s) 446
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 2 cut(s) 211, 262
AluBI AGCT 3 cut(s) 198, 405, 456
AluI AGCT 3 cut(s) 198, 405, 456
Alw21I GWGCWC 1 cut(s) 407
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 3 cut(s) 40, 53, 382
AoxI GGCC 7 cut(s) 20, 137, 152, 187, 280, 299, 305
AspS9I GGNCC 4 cut(s) 183, 192, 299, 305
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 3 cut(s) 145, 235, 340
AsuNHI GCTAGC 1 cut(s) 104
AvaII GGWCC 2 cut(s) 183, 192
AxyI CCTNAGG 1 cut(s) 482
BamHI GGATCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 316
BanII GRGCYC 2 cut(s) 352, 407
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
Bbv12I GWGCWC 1 cut(s) 407
BceAI ACGGC 2 cut(s) 295, 403
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 2 cut(s) 105, 120
BglI GCCNNNNNGGC 1 cut(s) 377
BglII AGATCT 2 cut(s) 12, 116
BisI GCNGC 4 cut(s) 161, 164, 248, 270
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 4 cut(s) 162, 165, 249, 271
Bme1390I CCNGG 1 cut(s) 303
Bme18I GGWCC 2 cut(s) 183, 192
BmgT120I GGNCC 4 cut(s) 183, 192, 299, 305
BmiI GGNNCC 7 cut(s) 47, 159, 300, 306, 318, 351, 399
BmrFI CCNGG 1 cut(s) 303
BmtI GCTAGC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 389, 421
Bpu1102I GCTNAGC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bse118I RCCGGY 5 cut(s) 127, 166, 189, 255, 282
Bse21I CCTNAGG 1 cut(s) 482
Bse8I GATNNNNATC 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 302
BseJI GATNNNNATC 1 cut(s) 50
BseMII CTCAG 2 cut(s) 242, 473
BseRI GAGGAG 2 cut(s) 193, 466
BseX3I CGGCCG 2 cut(s) 187, 280
BseYI CCCAGC 1 cut(s) 295
Bsh1285I CGRYCG 2 cut(s) 190, 283
BshFI GGCC 7 cut(s) 22, 139, 154, 189, 282, 301, 307
BshNI GGYRCC 1 cut(s) 316
BsiEI CGRYCG 2 cut(s) 190, 283
BsiHKAI GWGCWC 1 cut(s) 407
BslFI GGGAC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 7 cut(s) 22, 139, 154, 189, 282, 301, 307
Bso31I GGTCTC 1 cut(s) 471
Bsp1286I GDGCHC 2 cut(s) 352, 407
Bsp143I GATC 5 cut(s) 12, 36, 45, 116, 374
Bsp1720I GCTNAGC 1 cut(s) 251
BspACI CCGC 7 cut(s) 131, 161, 164, 170, 238, 248, 269
BspANI GGCC 7 cut(s) 22, 139, 154, 189, 282, 301, 307
BspCNI CTCAG 2 cut(s) 243, 474
BspLI GGNNCC 7 cut(s) 47, 159, 300, 306, 318, 351, 399
BspOI GCTAGC 1 cut(s) 108
BspPI GGATC 3 cut(s) 40, 53, 382
BspT107I GGYRCC 1 cut(s) 316
BspTNI GGTCTC 1 cut(s) 471
BsrFI RCCGGY 5 cut(s) 127, 166, 189, 255, 282
BssAI RCCGGY 5 cut(s) 127, 166, 189, 255, 282
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 5 cut(s) 12, 36, 45, 116, 374
BssNI GRCGYC 1 cut(s) 446
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 446
BstC8I GCNNGC 6 cut(s) 106, 129, 168, 274, 407, 444
BstDEI CTNAG 3 cut(s) 9, 251, 482
BstKTI GATC 5 cut(s) 15, 39, 48, 119, 377
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 5 cut(s) 12, 36, 45, 116, 374
BstMCI CGRYCG 2 cut(s) 190, 283
BstMWI GCNNNNNNNGC 7 cut(s) 151, 160, 195, 244, 377, 406, 415
BstNSI RCATGY 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 301
BstX2I RGATCY 3 cut(s) 12, 45, 116
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 3 cut(s) 12, 45, 116
BstZI CGGCCG 2 cut(s) 187, 280
Bsu36I CCTNAGG 1 cut(s) 482
BsuRI GGCC 7 cut(s) 22, 139, 154, 189, 282, 301, 307
Cac8I GCNNGC 6 cut(s) 106, 129, 168, 274, 407, 444
Cfr10I RCCGGY 5 cut(s) 127, 166, 189, 255, 282
Cfr13I GGNCC 4 cut(s) 183, 192, 299, 305
CseI GACGC 1 cut(s) 435
CviAII CATG 2 cut(s) 98, 364
DdeI CTNAG 3 cut(s) 9, 251, 482
DpnI GATC 5 cut(s) 14, 38, 47, 118, 376
DpnII GATC 5 cut(s) 12, 36, 45, 116, 374
EaeI YGGCCR 3 cut(s) 152, 187, 280
EagI CGGCCG 2 cut(s) 187, 280
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 405
EclXI CGGCCG 2 cut(s) 187, 280
Eco24I GRGCYC 2 cut(s) 352, 407
Eco31I GGTCTC 1 cut(s) 471
Eco47I GGWCC 2 cut(s) 183, 192
Eco52I CGGCCG 2 cut(s) 187, 280
Eco53kI GAGCTC 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 405
EcoT38I GRGCYC 2 cut(s) 352, 407
FaeI CATG 2 cut(s) 101, 367
FaiI YATR 4 cut(s) 78, 99, 365, 369
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 97, 363
FauI CCCGC 1 cut(s) 231
Fnu4HI GCNGC 4 cut(s) 161, 164, 248, 270
FriOI GRGCYC 2 cut(s) 352, 407
Fsp4HI GCNGC 4 cut(s) 161, 164, 248, 270
FspBI CTAG 2 cut(s) 105, 120
GluI GCNGC 4 cut(s) 161, 164, 248, 270
GsaI CCCAGC 1 cut(s) 299
HaeIII GGCC 7 cut(s) 22, 139, 154, 189, 282, 301, 307
HgaI GACGC 1 cut(s) 435
Hin1I GRCGYC 1 cut(s) 446
Hin1II CATG 2 cut(s) 101, 367
HinfI GANTC 2 cut(s) 51, 464
HphI GGTGA 3 cut(s) 145, 235, 340
Hpy188I TCNGA 3 cut(s) 36, 50, 202
Hpy188III TCNNGA 5 cut(s) 16, 40, 120, 385, 427
Hpy99I CGWCG 5 cut(s) 281, 313, 361, 424, 451
HpyAV CCTTC 4 cut(s) 205, 214, 259, 316
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 7 cut(s) 151, 160, 195, 244, 377, 406, 415
HpyF3I CTNAG 3 cut(s) 9, 251, 482
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 446
Hsp92II CATG 2 cut(s) 101, 367
KroI GCCGGC 2 cut(s) 127, 166
KroNI GCCGGC 2 cut(s) 129, 168
Kzo9I GATC 5 cut(s) 12, 36, 45, 116, 374
LmnI GCTCC 7 cut(s) 142, 157, 203, 355, 397, 414, 453
MaeI CTAG 2 cut(s) 105, 120
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 223
MalI GATC 5 cut(s) 14, 38, 47, 118, 376
MboI GATC 5 cut(s) 12, 36, 45, 116, 374
MboII GAAGA 5 cut(s) 76, 274, 442, 445, 448
MflI RGATCY 3 cut(s) 12, 45, 116
MhlI GDGCHC 2 cut(s) 352, 407
MluCI AATT 1 cut(s) 70
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 1 cut(s) 267
MreI CGCCGGCG 1 cut(s) 166
MroNI GCCGGC 2 cut(s) 127, 166
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 250
MspR9I CCNGG 1 cut(s) 303
MwoI GCNNNNNNNGC 7 cut(s) 151, 160, 195, 244, 377, 406, 415
NaeI GCCGGC 2 cut(s) 129, 168
NciI CCSGG 1 cut(s) 303
NdeII GATC 5 cut(s) 12, 36, 45, 116, 374
NgoMIV GCCGGC 2 cut(s) 127, 166
NheI GCTAGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 101, 367
NlaIV GGNNCC 7 cut(s) 47, 159, 300, 306, 318, 351, 399
NmeAIII GCCGAG 2 cut(s) 426, 446
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 1 cut(s) 367
PciI ACATGT 1 cut(s) 363
PcsI WCGNNNNNNNCGW 3 cut(s) 317, 383, 398
PdiI GCCGGC 2 cut(s) 129, 168
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 4 cut(s) 162, 165, 249, 271
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
PscI ACATGT 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 407
Psp1406I AACGTT 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 295
PspN4I GGNNCC 7 cut(s) 47, 159, 300, 306, 318, 351, 399
PspPI GGNCC 4 cut(s) 183, 192, 299, 305
PsuI RGATCY 3 cut(s) 12, 45, 116
RseI CAYNNNNRTG 1 cut(s) 98
SacI GAGCTC 1 cut(s) 407
SatI GCNGC 4 cut(s) 161, 164, 248, 270
Sau3AI GATC 5 cut(s) 12, 36, 45, 116, 374
Sau96I GGNCC 4 cut(s) 183, 192, 299, 305
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 2 cut(s) 352, 407
SgrAI CRCCGGYG 1 cut(s) 166
SinI GGWCC 2 cut(s) 183, 192
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 1 cut(s) 70
SsiI CCGC 7 cut(s) 131, 161, 164, 170, 238, 248, 269
SspI AATATT 1 cut(s) 334
SspMI CTAG 2 cut(s) 105, 120
SstI GAGCTC 1 cut(s) 407
StyD4I CCNGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 114
TaqI TCGA 6 cut(s) 39, 176, 386, 428, 449, 501
TasI AATT 1 cut(s) 70
TauI GCSGC 4 cut(s) 163, 166, 250, 272
TfiI GAWTC 1 cut(s) 51
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 374
VpaK11BI GGWCC 2 cut(s) 183, 192
XbaI TCTAGA 1 cut(s) 119
XceI RCATGY 1 cut(s) 367
XspI CTAG 2 cut(s) 105, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.