MD03G1009700.v1.1

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015284
Physical Location & Seq
Forward (+)
738346 .. 739296
951 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1009700.v1.1.491

Sequence Viewer

Length: 351 bp
ATGGAGAAAGTCACGATCTTGAGGCGCGGAGAGTCGCTGGACTCGATGATGAATGAAAAGGGTGGTTTGGCTGGGATCAGGACTGGGAGGCTACGGCCCAGGCCAGAAATGGTGCAGAAGACCGACATGTATGCCGGATCAGCGTTCGTGGTGTCGCCGGAGCCGAGCTCGCTCCCGTTGCCGTCATTTTCGAGGAAGAAGCAGGTGCTGAAGGTCATCGACGACGACTCAGCGACTCGAGACGACGTACCTGTCTGCCTGTTTGGATCATTGTTGATTTCGACTTTATTAGATCTTGAATCATTTTTTGGATTTTGGTTTTCGGTGATTGATGTTCTGTCTGGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

117

Amino Acids

12.83

Weight (kDa)

5.17

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 44 - 63 1.9e-08 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21570
fragaria_vesca FvH4_4g16740
malus_domestica MD03G1009700.v1.1
prunus_persica Prupe.1G145900_v2.0.a1
pyrus_communis pycom02g14100 pycom13g15250 pycom16g15000
rosa_chinensis RchiOBHm_Chr4g0420321
rosa_laevigata RLG00000007774
rosa_multiflora Rmu_sc0001767.1_g000003
rosa_roxburghii Rroxscaffold_5G00362970
rosa_rugosa Rorug04G0163400
rosa_samantha Rh4BG227300 Rh4CG238500 Rh4DG222900
rosa_wichuraiana Rw4G019350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
AasI GACNNNNNNGTC 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 193
AccII CGCG 1 cut(s) 27
AciI CCGC 1 cut(s) 27
AclWI GGATC 3 cut(s) 83, 145, 274
AcuI CTGAAG 1 cut(s) 230
AfaI GTAC 1 cut(s) 249
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 1 cut(s) 299
AjnI CCWGG 1 cut(s) 98
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 1 cut(s) 168
AluI AGCT 1 cut(s) 168
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 3 cut(s) 83, 145, 274
AlwNI CAGNNNCTG 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 237
AoxI GGCC 2 cut(s) 95, 101
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 237
BanII GRGCYC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 125
Bbv12I GWGCWC 1 cut(s) 170
BceAI ACGGC 2 cut(s) 110, 166
BcgI CGANNNNNNTGC 2 cut(s) 113, 147
BciT130I CCWGG 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 193
BglII AGATCT 1 cut(s) 292
Bme1390I CCNGG 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 237
BmgT120I GGNCC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 100
BmrI ACTGGG 1 cut(s) 93
BmuI ACTGGG 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 125
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BpuEI CTTGAG 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 98
Bse1I ACTGG 1 cut(s) 88
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 98
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 88
BseYI CCCAGC 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 97, 103
BsiHKAI GWGCWC 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 237
BsiSI CCGG 2 cut(s) 135, 158
BsmAI GTCTC 1 cut(s) 234
BsmBI CGTCTC 1 cut(s) 234
BsnI GGCC 2 cut(s) 97, 103
BsoBI CYCGRG 1 cut(s) 237
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 5 cut(s) 15, 75, 137, 266, 292
BspACI CCGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 97, 103
BspCNI CTCAG 1 cut(s) 242
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 3 cut(s) 83, 145, 274
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 98
BssMI GATC 5 cut(s) 15, 75, 137, 266, 292
Bst2UI CCWGG 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 5 cut(s) 18, 78, 140, 269, 295
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 5 cut(s) 15, 75, 137, 266, 292
BstMWI GCNNNNNNNGC 3 cut(s) 140, 169, 178
BstNI CCWGG 1 cut(s) 100
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 1 cut(s) 98
BstUI CGCG 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 125
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BsuRI GGCC 2 cut(s) 97, 103
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 170
CaiI CAGNNNCTG 1 cut(s) 208
CfoI GCGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 248
CviAII CATG 1 cut(s) 127
CviJI RGCY 6 cut(s) 71, 91, 97, 103, 163, 168
CviKI_1 RGCY 6 cut(s) 71, 91, 97, 103, 163, 168
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 1 cut(s) 229
DpnI GATC 5 cut(s) 17, 77, 139, 268, 294
DpnII GATC 5 cut(s) 15, 75, 137, 266, 292
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 168
Eco57I CTGAAG 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 98
EcoT38I GRGCYC 1 cut(s) 170
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 1 cut(s) 130
FaiI YATR 2 cut(s) 128, 132
FatI CATG 1 cut(s) 126
FriOI GRGCYC 1 cut(s) 170
GlaI GCGC 1 cut(s) 26
GsaI CCCAGC 1 cut(s) 75
HaeIII GGCC 2 cut(s) 97, 103
HapII CCGG 2 cut(s) 135, 158
HhaI GCGC 1 cut(s) 27
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 5 cut(s) 32, 41, 227, 235, 299
HpaII CCGG 2 cut(s) 135, 158
HphI GGTGA 1 cut(s) 337
Hpy188III TCNNGA 5 cut(s) 13, 19, 79, 239, 296
Hpy99I CGWCG 3 cut(s) 224, 227, 248
HpyAV CCTTC 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 1 cut(s) 115
HpyF10VI GCNNNNNNNGC 3 cut(s) 140, 169, 178
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 5 cut(s) 15, 75, 137, 266, 292
LmnI GCTCC 2 cut(s) 160, 177
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 10
MalI GATC 5 cut(s) 17, 77, 139, 268, 294
MboI GATC 5 cut(s) 15, 75, 137, 266, 292
MboII GAAGA 2 cut(s) 130, 208
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 170
MlyI GAGTC 4 cut(s) 35, 41, 221, 229
MnlI CCTC 3 cut(s) 15, 81, 186
MspI CCGG 2 cut(s) 135, 158
MspR9I CCNGG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 100
MvnI CGCG 1 cut(s) 27
MwoI GCNNNNNNNGC 3 cut(s) 140, 169, 178
NdeII GATC 5 cut(s) 15, 75, 137, 266, 292
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 162
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 1 cut(s) 10
NspI RCATGY 1 cut(s) 130
PaeR7I CTCGAG 1 cut(s) 237
PaqCI CACCTGC 1 cut(s) 193
PciI ACATGT 1 cut(s) 126
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 161
PfeI GAWTC 1 cut(s) 299
PleI GAGTC 4 cut(s) 35, 40, 221, 229
PpsI GAGTC 4 cut(s) 35, 40, 221, 229
PscI ACATGT 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 71
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 96
PstNI CAGNNNCTG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SacI GAGCTC 1 cut(s) 170
Sau3AI GATC 5 cut(s) 15, 75, 137, 266, 292
Sau96I GGNCC 1 cut(s) 96
SchI GAGTC 4 cut(s) 35, 41, 221, 229
ScrFI CCNGG 1 cut(s) 100
SduI GDGCHC 1 cut(s) 170
SetI ASST 5 cut(s) 170, 207, 216, 249, 253
Sfr274I CTCGAG 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 237
SmlI CTYRAG 2 cut(s) 19, 237
SmoI CTYRAG 2 cut(s) 19, 237
SsiI CCGC 1 cut(s) 27
SstI GAGCTC 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 98
TaiI ACGT 1 cut(s) 249
TaqI TCGA 5 cut(s) 44, 191, 219, 238, 281
TaqII GACCGA 1 cut(s) 137
TfiI GAWTC 1 cut(s) 299
TseFI GTSAC 1 cut(s) 10
Tsp45I GTSAC 1 cut(s) 10
TspDTI ATGAA 2 cut(s) 65, 69
XceI RCATGY 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
XhoI CTCGAG 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.