pycom02g14100

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0015284
Physical Location & Seq
Forward (+)
10700936 .. 10701247
312 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g14100.1

Sequence Viewer

Length: 312 bp
ATGCAGAAAGTCATAATCTTGAGGTGCGGAGAGTCTTTGGACTCGAAGATGAATGAAAAGGGTGGCTTGGTTGCCACTGGGACCGAAAGGCTCCGGCCCAACCCAGAAATGGTGCAGAAGCAGGTGGGGATTGTGGATCTAAGGTCTCCGGTGGGTGGTAAAACTGACGTGTACGTCGGATGGTCGTTCGTGGTGCCACCGGAGCTGATCGCCCTCCCGTTGCCATTGTTTTCAAGGAAGAAGCAAGTGTCAAAGGTTGTTGACCATGGCTCGGTGACCCGACACCTGAGGCGGTTGCTCCGGCTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

104

Amino Acids

11.43

Weight (kDa)

10.28

Isoelectric Point (pI)

52.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21570
fragaria_vesca FvH4_4g16740
malus_domestica MD03G1009700.v1.1
prunus_persica Prupe.1G145900_v2.0.a1
pyrus_communis pycom02g14100 pycom13g15250 pycom16g15000
rosa_chinensis RchiOBHm_Chr4g0420321
rosa_laevigata RLG00000007774
rosa_multiflora Rmu_sc0001767.1_g000003
rosa_roxburghii Rroxscaffold_5G00362970
rosa_rugosa Rorug04G0163400
rosa_samantha Rh4BG227300 Rh4CG238500 Rh4DG222900
rosa_wichuraiana Rw4G019350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
AasI GACNNNNNNGTC 1 cut(s) 173
Acc36I ACCTGC 1 cut(s) 112
AccB1I GGYRCC 1 cut(s) 193
AciI CCGC 2 cut(s) 27, 292
AclWI GGATC 1 cut(s) 144
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 3 cut(s) 109, 155, 271
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 1 cut(s) 234
AjiI CACGTC 1 cut(s) 169
AluBI AGCT 1 cut(s) 205
AluI AGCT 1 cut(s) 205
Alw26I GTCTC 1 cut(s) 150
AlwI GGATC 1 cut(s) 144
AoxI GGCC 1 cut(s) 95
AspS9I GGNCC 2 cut(s) 81, 96
AsuHPI GGTGA 1 cut(s) 286
AvaII GGWCC 1 cut(s) 81
AxyI CCTNAGG 1 cut(s) 287
BanI GGYRCC 1 cut(s) 193
BccI CCATC 1 cut(s) 174
BcoDI GTCTC 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 81
BmgBI CACGTC 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 81, 96
BmiI GGNNCC 3 cut(s) 82, 92, 195
BmrI ACTGGG 1 cut(s) 87
BmuI ACTGGG 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 265
BsaWI WCCGGW 2 cut(s) 148, 199
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 155, 271
Bse1I ACTGG 1 cut(s) 82
Bse21I CCTNAGG 1 cut(s) 287
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 3 cut(s) 109, 155, 271
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 134
BshFI GGCC 1 cut(s) 97
BshNI GGYRCC 1 cut(s) 193
BsiSI CCGG 4 cut(s) 94, 149, 200, 301
BslFI GGGAC 1 cut(s) 94
BslI CCNNNNNNNGG 3 cut(s) 109, 155, 271
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 94
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 136, 207
Bsp19I CCATGG 1 cut(s) 265
BspACI CCGC 2 cut(s) 27, 292
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 279
BspLI GGNNCC 3 cut(s) 82, 92, 195
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 193
BspTNI GGTCTC 1 cut(s) 150
BsrI ACTGG 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 2 cut(s) 136, 207
BssT1I CCWWGG 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 140, 287
BstDSI CCRYGG 1 cut(s) 265
BstEII GGTNACC 1 cut(s) 274
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 2 cut(s) 139, 210
BstMAI GTCTC 1 cut(s) 150
BstMBI GATC 2 cut(s) 136, 207
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstPI GGTNACC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
Bsu36I CCTNAGG 1 cut(s) 287
BsuRI GGCC 1 cut(s) 97
BtgI CCRYGG 1 cut(s) 265
BtrI CACGTC 1 cut(s) 169
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 81, 96
Csp6I GTAC 1 cut(s) 172
CviAII CATG 1 cut(s) 266
CviJI RGCY 6 cut(s) 66, 91, 97, 205, 270, 304
CviKI_1 RGCY 6 cut(s) 66, 91, 97, 205, 270, 304
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 2 cut(s) 140, 287
DpnI GATC 2 cut(s) 138, 209
DpnII GATC 2 cut(s) 136, 207
DrdI GACNNNNNNGTC 1 cut(s) 173
DseDI GACNNNNNNGTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 287
Eco91I GGTNACC 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 1 cut(s) 269
FaiI YATR 2 cut(s) 14, 267
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FaqI GGGAC 1 cut(s) 94
FatI CATG 1 cut(s) 265
FokI GGATG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 97
HapII CCGG 4 cut(s) 94, 149, 200, 301
Hin1II CATG 1 cut(s) 269
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 32, 41
HpaII CCGG 4 cut(s) 94, 149, 200, 301
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 2 cut(s) 172, 262
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 1 cut(s) 19
Hpy8I GTNNAC 2 cut(s) 172, 262
Hpy99I CGWCG 1 cut(s) 179
HpyCH4IV ACGT 2 cut(s) 168, 174
HpyCH4V TGCA 2 cut(s) 4, 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 2 cut(s) 140, 287
HpySE526I ACGT 2 cut(s) 168, 174
Hsp92II CATG 1 cut(s) 269
Kzo9I GATC 2 cut(s) 136, 207
LmnI GCTCC 3 cut(s) 96, 202, 303
LpnPI CCDG 7 cut(s) 63, 107, 107, 117, 162, 213, 299
MaeII ACGT 2 cut(s) 168, 174
MaeIII GTNAC 1 cut(s) 274
MalI GATC 2 cut(s) 138, 209
MboI GATC 2 cut(s) 136, 207
MboII GAAGA 2 cut(s) 58, 250
MflI RGATCY 1 cut(s) 136
MlyI GAGTC 2 cut(s) 35, 41
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 3 cut(s) 15, 224, 282
MspI CCGG 4 cut(s) 94, 149, 200, 301
MwoI GCNNNNNNNGC 1 cut(s) 202
NcoI CCATGG 1 cut(s) 265
NdeII GATC 2 cut(s) 136, 207
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 3 cut(s) 82, 92, 195
NmuCI GTSAC 1 cut(s) 274
PaqCI CACCTGC 1 cut(s) 112
PleI GAGTC 2 cut(s) 35, 40
PpsI GAGTC 2 cut(s) 35, 40
PspEI GGTNACC 1 cut(s) 274
PspN4I GGNNCC 3 cut(s) 82, 92, 195
PspPI GGNCC 2 cut(s) 81, 96
PsuI RGATCY 1 cut(s) 136
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
Sau3AI GATC 2 cut(s) 136, 207
Sau96I GGNCC 2 cut(s) 81, 96
SchI GAGTC 2 cut(s) 35, 41
SetI ASST 8 cut(s) 26, 126, 146, 171, 177, 207, 258, 288
SinI GGWCC 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
SsiI CCGC 2 cut(s) 27, 292
StyI CCWWGG 1 cut(s) 265
TaiI ACGT 2 cut(s) 171, 177
TaqI TCGA 1 cut(s) 44
TaqII GACCGA 1 cut(s) 98
TscAI CASTG 1 cut(s) 82
TseFI GTSAC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 2 cut(s) 65, 69
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.