RLG00000007774

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015284
Physical Location & Seq
Forward (+)
20909105 .. 20911073
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007774

Sequence Viewer

Length: 657 bp
ATGGGGACTGAGATCTTAAGGCCACAGGATTGTCTGATCGAGCGGATCCGAGTCTCTCCGGCGAAGAGTAATTACTATGGAAATCCCATTCCCATTCATGTGGCTAGCAACGTTAGATCTAGAAAGCCGGCGGTGAGGGCGGAGCAGAGGAGGCCGGAGCCGGCGGCGGTGGTCTCGAGGAGGTCCGGCCGGTCCAGCTCCGATGATTTGAAGGCGGAGAAGGTGACGATTTTGAGGCGGGGAGAGCCGATGAGCCGGTTGAAGAAGGCGGCGAGCGACGGCCGGTTGGAGAGGTTGGGGCCGGGGCCGACGGTGGCGCCCAAGGAGGTGAGGATTGTGGATTTGAGGACTCCGGGGACGGACATGTATGCCGGATCGGCGTTCGCGATGTCGCCTGAGCCAAGCTCGCTCCCGTTGCCGTCGTTCTCGAGGAAGAAGAAGCAGGCGTCGAGGAGCTTTGACGACTCGGCGACCAGAGACCTGAGGCCCGCCATAGCATATTCGTCACCGGAGCTCCGACGGAAATCGCGGTCGAGGATTGGTAACCAAGGGTGGTCTGCAGAGATGAGGATACGGACAGAGCAGCCATACATTCTTCAGTTGACCAATTACGAGAAGATCTCGCATAGAGGAATAACAACAAGCAAACCAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

219

Amino Acids

24.35

Weight (kDa)

10.8

Isoelectric Point (pI)

81.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 123 - 142 3.6e-08 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21570
fragaria_vesca FvH4_4g16740
malus_domestica MD03G1009700.v1.1
prunus_persica Prupe.1G145900_v2.0.a1
pyrus_communis pycom02g14100 pycom13g15250 pycom16g15000
rosa_chinensis RchiOBHm_Chr4g0420321
rosa_laevigata RLG00000007774
rosa_multiflora Rmu_sc0001767.1_g000003
rosa_roxburghii Rroxscaffold_5G00362970
rosa_rugosa Rorug04G0163400
rosa_samantha Rh4BG227300 Rh4CG238500 Rh4DG222900
rosa_wichuraiana Rw4G019350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 316
AccBSI CCGCTC 1 cut(s) 43
AccII CGCG 2 cut(s) 386, 529
AclI AACGTT 1 cut(s) 111
AclWI GGATC 3 cut(s) 40, 53, 382
AcoI YGGCCR 2 cut(s) 187, 280
AcuI CTGAAG 1 cut(s) 581
AcyI GRCGYC 2 cut(s) 317, 446
AflII CTTAAG 1 cut(s) 16
AflIII ACRYGT 1 cut(s) 363
AgsI TTSAA 2 cut(s) 211, 262
AluBI AGCT 4 cut(s) 198, 405, 456, 514
AluI AGCT 4 cut(s) 198, 405, 456, 514
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 3 cut(s) 58, 178, 471
AlwI GGATC 3 cut(s) 40, 53, 382
Ama87I CYCGRG 2 cut(s) 175, 427
AoxI GGCC 7 cut(s) 20, 152, 187, 280, 299, 305, 485
ApeKI GCWGC 1 cut(s) 583
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 5 cut(s) 183, 192, 299, 305, 486
AsuC2I CCSGG 2 cut(s) 303, 354
AsuHPI GGTGA 4 cut(s) 145, 235, 340, 498
AsuNHI GCTAGC 1 cut(s) 104
AvaI CYCGRG 2 cut(s) 175, 427
AvaII GGWCC 2 cut(s) 183, 192
AxyI CCTNAGG 1 cut(s) 482
BamHI GGATCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 516
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 1 cut(s) 595
BceAI ACGGC 2 cut(s) 295, 403
BciVI GTATCC 1 cut(s) 564
BcnI CCSGG 2 cut(s) 303, 354
BcoDI GTCTC 3 cut(s) 58, 178, 471
BfaI CTAG 2 cut(s) 105, 120
BfmI CTRYAG 1 cut(s) 558
BfoI RGCGCY 1 cut(s) 320
BfrI CTTAAG 1 cut(s) 16
BfuI GTATCC 1 cut(s) 564
BglI GCCNNNNNGGC 1 cut(s) 377
BglII AGATCT 3 cut(s) 12, 116, 618
BisI GCNGC 3 cut(s) 165, 270, 584
BlsI GCNGC 3 cut(s) 166, 271, 585
Bme1390I CCNGG 2 cut(s) 303, 354
Bme18I GGWCC 2 cut(s) 183, 192
BmeT110I CYCGRG 2 cut(s) 175, 427
BmgT120I GGNCC 5 cut(s) 183, 192, 299, 305, 486
BmiI GGNNCC 5 cut(s) 47, 159, 300, 306, 318
BmrFI CCNGG 2 cut(s) 303, 354
BmtI GCTAGC 1 cut(s) 108
BplI GAGNNNNNCTC 4 cut(s) 389, 421, 605, 637
Bpu10I CCTNAGC 1 cut(s) 396
BpuMI CCSGG 2 cut(s) 303, 354
BsaHI GRCGYC 2 cut(s) 317, 446
BsaI GGTCTC 2 cut(s) 178, 471
BsaJI CCNNGG 4 cut(s) 302, 321, 353, 547
BsaWI WCCGGW 1 cut(s) 508
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bse118I RCCGGY 5 cut(s) 127, 160, 189, 255, 282
Bse21I CCTNAGG 1 cut(s) 482
BseDI CCNNGG 4 cut(s) 302, 321, 353, 547
BseMII CTCAG 2 cut(s) 387, 473
BseRI GAGGAG 3 cut(s) 163, 193, 466
BseX3I CGGCCG 2 cut(s) 187, 280
BseXI GCAGC 1 cut(s) 595
Bsh1236I CGCG 2 cut(s) 386, 529
Bsh1285I CGRYCG 3 cut(s) 190, 283, 533
BshFI GGCC 7 cut(s) 22, 154, 189, 282, 301, 307, 487
BshNI GGYRCC 1 cut(s) 316
BsiEI CGRYCG 3 cut(s) 190, 283, 533
BsiHKAI GWGCWC 1 cut(s) 516
BsiHKCI CYCGRG 2 cut(s) 175, 427
BslFI GGGAC 2 cut(s) 19, 370
BsmAI GTCTC 3 cut(s) 58, 178, 471
BsmFI GGGAC 2 cut(s) 19, 370
BsnI GGCC 7 cut(s) 22, 154, 189, 282, 301, 307, 487
Bso31I GGTCTC 2 cut(s) 178, 471
BsoBI CYCGRG 2 cut(s) 175, 427
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 6 cut(s) 12, 36, 45, 116, 374, 618
Bsp68I TCGCGA 1 cut(s) 386
BspANI GGCC 7 cut(s) 22, 154, 189, 282, 301, 307, 487
BspCNI CTCAG 2 cut(s) 388, 474
BspFNI CGCG 2 cut(s) 386, 529
BspLI GGNNCC 5 cut(s) 47, 159, 300, 306, 318
BspMAI CTGCAG 1 cut(s) 562
BspOI GCTAGC 1 cut(s) 108
BspPI GGATC 3 cut(s) 40, 53, 382
BspT107I GGYRCC 1 cut(s) 316
BspTI CTTAAG 1 cut(s) 16
BspTNI GGTCTC 2 cut(s) 178, 471
BsrBI CCGCTC 1 cut(s) 43
BsrFI RCCGGY 5 cut(s) 127, 160, 189, 255, 282
BssAI RCCGGY 5 cut(s) 127, 160, 189, 255, 282
BssECI CCNNGG 4 cut(s) 302, 321, 353, 547
BssMI GATC 6 cut(s) 12, 36, 45, 116, 374, 618
BssNI GRCGYC 2 cut(s) 317, 446
BssT1I CCWWGG 2 cut(s) 321, 547
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 2 cut(s) 317, 446
BstAFI CTTAAG 1 cut(s) 16
BstC8I GCNNGC 7 cut(s) 106, 129, 162, 274, 407, 444, 489
BstDEI CTNAG 3 cut(s) 9, 396, 482
BstEII GGTNACC 1 cut(s) 542
BstFNI CGCG 2 cut(s) 386, 529
BstH2I RGCGCY 1 cut(s) 320
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 6 cut(s) 15, 39, 48, 119, 377, 621
BstMAI GTCTC 3 cut(s) 58, 178, 471
BstMBI GATC 6 cut(s) 12, 36, 45, 116, 374, 618
BstMCI CGRYCG 3 cut(s) 190, 283, 533
BstMWI GCNNNNNNNGC 7 cut(s) 137, 151, 195, 244, 377, 406, 415
BstNSI RCATGY 1 cut(s) 367
BstPI GGTNACC 1 cut(s) 542
BstSCI CCNGG 2 cut(s) 301, 352
BstSFI CTRYAG 1 cut(s) 558
BstUI CGCG 2 cut(s) 386, 529
BstV1I GCAGC 1 cut(s) 595
BstX2I RGATCY 4 cut(s) 12, 45, 116, 618
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 4 cut(s) 12, 45, 116, 618
BstZI CGGCCG 2 cut(s) 187, 280
Bsu36I CCTNAGG 1 cut(s) 482
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 7 cut(s) 22, 154, 189, 282, 301, 307, 487
BtgZI GCGATG 1 cut(s) 401
BtuMI TCGCGA 1 cut(s) 386
Cac8I GCNNGC 7 cut(s) 106, 129, 162, 274, 407, 444, 489
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 5 cut(s) 127, 160, 189, 255, 282
Cfr13I GGNCC 5 cut(s) 183, 192, 299, 305, 486
CseI GACGC 1 cut(s) 435
CviAII CATG 2 cut(s) 98, 364
DdeI CTNAG 3 cut(s) 9, 396, 482
DinI GGCGCC 1 cut(s) 318
DpnI GATC 6 cut(s) 14, 38, 47, 118, 376, 620
DpnII GATC 6 cut(s) 12, 36, 45, 116, 374, 618
EaeI YGGCCR 2 cut(s) 187, 280
EagI CGGCCG 2 cut(s) 187, 280
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
EciI GGCGGA 2 cut(s) 155, 230
Ecl136II GAGCTC 1 cut(s) 514
EclXI CGGCCG 2 cut(s) 187, 280
Eco130I CCWWGG 2 cut(s) 321, 547
Eco24I GRGCYC 1 cut(s) 516
Eco31I GGTCTC 2 cut(s) 178, 471
Eco47I GGWCC 2 cut(s) 183, 192
Eco52I CGGCCG 2 cut(s) 187, 280
Eco53kI GAGCTC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 581
Eco81I CCTNAGG 1 cut(s) 482
Eco88I CYCGRG 2 cut(s) 175, 427
Eco91I GGTNACC 1 cut(s) 542
EcoICRI GAGCTC 1 cut(s) 514
EcoO65I GGTNACC 1 cut(s) 542
EcoT14I CCWWGG 2 cut(s) 321, 547
EcoT38I GRGCYC 1 cut(s) 516
EgeI GGCGCC 1 cut(s) 318
EheI GGCGCC 1 cut(s) 318
ErhI CCWWGG 2 cut(s) 321, 547
FaeI CATG 2 cut(s) 101, 367
FaiI YATR 8 cut(s) 78, 99, 365, 369, 494, 499, 589, 627
FaqI GGGAC 2 cut(s) 19, 370
FatI CATG 2 cut(s) 97, 363
FauI CCCGC 2 cut(s) 231, 496
Fnu4HI GCNGC 3 cut(s) 165, 270, 584
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 3 cut(s) 165, 270, 584
FspBI CTAG 2 cut(s) 105, 120
GlaI GCGC 1 cut(s) 318
GluI GCNGC 3 cut(s) 165, 270, 584
HaeII RGCGCY 1 cut(s) 320
HaeIII GGCC 7 cut(s) 22, 154, 189, 282, 301, 307, 487
HgaI GACGC 1 cut(s) 435
HhaI GCGC 1 cut(s) 319
Hin1I GRCGYC 2 cut(s) 317, 446
Hin1II CATG 2 cut(s) 101, 367
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HinfI GANTC 3 cut(s) 51, 349, 464
HphI GGTGA 4 cut(s) 145, 235, 340, 498
Hpy166II GTNNAC 1 cut(s) 603
Hpy188I TCNGA 4 cut(s) 36, 50, 202, 518
Hpy188III TCNNGA 4 cut(s) 120, 175, 385, 427
Hpy8I GTNNAC 1 cut(s) 603
Hpy99I CGWCG 5 cut(s) 281, 313, 424, 451, 522
HpyAV CCTTC 3 cut(s) 205, 214, 259
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 1 cut(s) 560
HpyF10VI GCNNNNNNNGC 7 cut(s) 137, 151, 195, 244, 377, 406, 415
HpyF3I CTNAG 3 cut(s) 9, 396, 482
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 2 cut(s) 317, 446
Hsp92II CATG 2 cut(s) 101, 367
HspAI GCGC 1 cut(s) 317
KasI GGCGCC 1 cut(s) 316
KroI GCCGGC 2 cut(s) 127, 160
KroNI GCCGGC 2 cut(s) 129, 162
Kzo9I GATC 6 cut(s) 12, 36, 45, 116, 374, 618
LmnI GCTCC 7 cut(s) 142, 157, 203, 414, 453, 511, 519
Lsp1109I GCAGC 1 cut(s) 595
MaeI CTAG 2 cut(s) 105, 120
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 3 cut(s) 223, 504, 542
MalI GATC 6 cut(s) 14, 38, 47, 118, 376, 620
MbiI CCGCTC 1 cut(s) 43
MboI GATC 6 cut(s) 12, 36, 45, 116, 374, 618
MboII GAAGA 6 cut(s) 76, 274, 445, 448, 587, 628
MflI RGATCY 4 cut(s) 12, 45, 116, 618
MhlI GDGCHC 1 cut(s) 516
MluCI AATT 2 cut(s) 70, 607
Mly113I GGCGCC 1 cut(s) 317
MlyI GAGTC 3 cut(s) 60, 343, 458
MmeI TCCRAC 2 cut(s) 267, 541
MroNI GCCGGC 2 cut(s) 127, 160
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 98
MspCI CTTAAG 1 cut(s) 16
MspR9I CCNGG 2 cut(s) 303, 354
MvnI CGCG 2 cut(s) 386, 529
MwoI GCNNNNNNNGC 7 cut(s) 137, 151, 195, 244, 377, 406, 415
NaeI GCCGGC 2 cut(s) 129, 162
NarI GGCGCC 1 cut(s) 317
NciI CCSGG 2 cut(s) 303, 354
NdeII GATC 6 cut(s) 12, 36, 45, 116, 374, 618
NgoMIV GCCGGC 2 cut(s) 127, 160
NheI GCTAGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 101, 367
NlaIV GGNNCC 5 cut(s) 47, 159, 300, 306, 318
NmeAIII GCCGAG 1 cut(s) 446
NmuCI GTSAC 2 cut(s) 223, 504
NruI TCGCGA 1 cut(s) 386
NspI RCATGY 1 cut(s) 367
PaeR7I CTCGAG 2 cut(s) 175, 427
PciI ACATGT 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 383
PdiI GCCGGC 2 cut(s) 129, 162
PkrI GCNGC 3 cut(s) 166, 271, 585
PleI GAGTC 3 cut(s) 59, 343, 458
PluTI GGCGCC 1 cut(s) 320
PpsI GAGTC 3 cut(s) 59, 343, 458
PscI ACATGT 1 cut(s) 363
Psp124BI GAGCTC 1 cut(s) 516
Psp1406I AACGTT 1 cut(s) 111
PspEI GGTNACC 1 cut(s) 542
PspN4I GGNNCC 5 cut(s) 47, 159, 300, 306, 318
PspPI GGNCC 5 cut(s) 183, 192, 299, 305, 486
PstI CTGCAG 1 cut(s) 562
PsuI RGATCY 4 cut(s) 12, 45, 116, 618
RruI TCGCGA 1 cut(s) 386
RseI CAYNNNNRTG 1 cut(s) 98
SacI GAGCTC 1 cut(s) 516
SaqAI TTAA 1 cut(s) 17
SatI GCNGC 3 cut(s) 165, 270, 584
Sau3AI GATC 6 cut(s) 12, 36, 45, 116, 374, 618
Sau96I GGNCC 5 cut(s) 183, 192, 299, 305, 486
SchI GAGTC 3 cut(s) 60, 343, 458
ScrFI CCNGG 2 cut(s) 303, 354
SduI GDGCHC 1 cut(s) 516
SfcI CTRYAG 1 cut(s) 558
SfoI GGCGCC 1 cut(s) 318
Sfr274I CTCGAG 2 cut(s) 175, 427
SinI GGWCC 2 cut(s) 183, 192
SlaI CTCGAG 2 cut(s) 175, 427
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 3 cut(s) 16, 175, 427
SmoI CTYRAG 3 cut(s) 16, 175, 427
Sse9I AATT 2 cut(s) 70, 607
SspDI GGCGCC 1 cut(s) 316
SspMI CTAG 2 cut(s) 105, 120
SstI GAGCTC 1 cut(s) 516
StyD4I CCNGG 2 cut(s) 301, 352
StyI CCWWGG 2 cut(s) 321, 547
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 114
TaqI TCGA 5 cut(s) 39, 176, 428, 449, 533
TasI AATT 2 cut(s) 70, 607
TauI GCSGC 2 cut(s) 167, 272
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TseFI GTSAC 2 cut(s) 223, 504
TseI GCWGC 1 cut(s) 583
Tsp45I GTSAC 2 cut(s) 223, 504
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 3 cut(s) 374, 535, 589
Vha464I CTTAAG 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 183, 192
XbaI TCTAGA 1 cut(s) 119
XceI RCATGY 1 cut(s) 367
XhoI CTCGAG 2 cut(s) 175, 427
XspI CTAG 2 cut(s) 105, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.