pycom16g15000

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015284
Physical Location & Seq
Forward (+)
10987919 .. 10988473
555 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g15000.1

Sequence Viewer

Length: 555 bp
ATGGGGACTGAGATCTTACGGCCTCGGGATTGTCTGATCGAAAGGATCAGAGTCCCTCCGGCGTCGTTTTCGCGCCGGAAGAGCAGCTACTATGGGAACCCCGTTGTTAACCAGAATTACGTTTCTAACCCTAGATCTAGGAAGCCGGCGGTGCGATATGAACAAAGGAGAATCGAGGCGCAGCCGCCGCCCGGGGTGGTCGCGAAGAGATCCAGCTCCGACGATGAACGTCAGGGCTTCAAGATGGAGAAAGTCACAATCTTGAGGCGCGGAGAGTCGCTGGACTCGAAGATGAATGAAAAGGGCGGTTTGGCTGGTACTGGGACCGAGAGGCCGCGGCCCGGCCCGGAAACGGTACAGAAGCAGGTGCGGATAGTGGATCTGAGGTCTCCGGTAGGTGGTAAGACCAACGTGTACGCCGGATCGTCGTTCGTGGTGTCGCCGGAGCCGATCGCCCTCCCGTTGCCGTCGTTTTCGAGGAAGAAGCAGGTGTCAAAGGTCGTTGACGACGACTCGGCGACCCGAGACCTGAGGCGGTTGCTCCGGCTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

185

Amino Acids

20.56

Weight (kDa)

10.54

Isoelectric Point (pI)

78.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 139 - 158 8.4e-06 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21570
fragaria_vesca FvH4_4g16740
malus_domestica MD03G1009700.v1.1
prunus_persica Prupe.1G145900_v2.0.a1
pyrus_communis pycom02g14100 pycom13g15250 pycom16g15000
rosa_chinensis RchiOBHm_Chr4g0420321
rosa_laevigata RLG00000007774
rosa_multiflora Rmu_sc0001767.1_g000003
rosa_roxburghii Rroxscaffold_5G00362970
rosa_rugosa Rorug04G0163400
rosa_samantha Rh4BG227300 Rh4CG238500 Rh4DG222900
rosa_wichuraiana Rw4G019350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 355, 478
Acc36I ACCTGC 2 cut(s) 355, 478
AccII CGCG 4 cut(s) 73, 203, 270, 337
AciI CCGC 9 cut(s) 149, 185, 188, 270, 306, 335, 337, 370, 535
AclWI GGATC 4 cut(s) 53, 204, 387, 430
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 3 cut(s) 319, 357, 416
AfiI CCNNNNNNNGG 4 cut(s) 191, 341, 352, 398
AflIII ACRYGT 1 cut(s) 411
AgsI TTSAA 1 cut(s) 241
AluBI AGCT 2 cut(s) 87, 216
AluI AGCT 2 cut(s) 87, 216
Alw26I GTCTC 2 cut(s) 393, 519
AlwI GGATC 4 cut(s) 53, 204, 387, 430
Ama87I CYCGRG 3 cut(s) 24, 191, 522
AoxI GGCC 4 cut(s) 20, 332, 338, 343
ApeKI GCWGC 2 cut(s) 84, 181
AspLEI GCGC 3 cut(s) 75, 181, 270
AspS9I GGNCC 3 cut(s) 324, 339, 344
AsuC2I CCSGG 4 cut(s) 192, 193, 342, 347
AvaI CYCGRG 3 cut(s) 24, 191, 522
AvaII GGWCC 1 cut(s) 324
AxyI CCTNAGG 1 cut(s) 530
BarI GAAGNNNNNNTAC 2 cut(s) 71, 103
BbvI GCAGC 2 cut(s) 96, 193
BccI CCATC 1 cut(s) 238
BceAI ACGGC 2 cut(s) 35, 451
BcnI CCSGG 4 cut(s) 192, 193, 342, 347
BcoDI GTCTC 2 cut(s) 393, 519
BfaI CTAG 2 cut(s) 132, 138
BfuAI ACCTGC 2 cut(s) 355, 478
BglII AGATCT 2 cut(s) 12, 134
BisI GCNGC 6 cut(s) 85, 182, 185, 188, 335, 338
BlsI GCNGC 6 cut(s) 86, 183, 186, 189, 336, 339
Bme1390I CCNGG 4 cut(s) 192, 193, 342, 347
Bme18I GGWCC 1 cut(s) 324
BmeT110I CYCGRG 3 cut(s) 24, 191, 522
BmgT120I GGNCC 3 cut(s) 324, 339, 344
BmiI GGNNCC 3 cut(s) 98, 325, 447
BmrFI CCNGG 4 cut(s) 192, 193, 342, 347
BmrI ACTGGG 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 283
BpuMI CCSGG 4 cut(s) 192, 193, 342, 347
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 2 cut(s) 393, 519
BsaJI CCNNGG 4 cut(s) 23, 191, 192, 335
BsaWI WCCGGW 1 cut(s) 391
Bsc4I CCNNNNNNNGG 4 cut(s) 191, 341, 352, 398
Bse118I RCCGGY 1 cut(s) 145
Bse1I ACTGG 1 cut(s) 325
Bse21I CCTNAGG 1 cut(s) 530
BseDI CCNNGG 4 cut(s) 23, 191, 192, 335
BseLI CCNNNNNNNGG 4 cut(s) 191, 341, 352, 398
BseMII CTCAG 2 cut(s) 374, 521
BseNI ACTGG 1 cut(s) 325
BseXI GCAGC 2 cut(s) 96, 193
Bsh1236I CGCG 4 cut(s) 73, 203, 270, 337
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 4 cut(s) 22, 334, 340, 345
BsiEI CGRYCG 1 cut(s) 453
BsiHKCI CYCGRG 3 cut(s) 24, 191, 522
BslFI GGGAC 3 cut(s) 19, 38, 337
BslI CCNNNNNNNGG 4 cut(s) 191, 341, 352, 398
BsmAI GTCTC 2 cut(s) 393, 519
BsmFI GGGAC 3 cut(s) 19, 38, 337
BsnI GGCC 4 cut(s) 22, 334, 340, 345
Bso31I GGTCTC 2 cut(s) 393, 519
BsoBI CYCGRG 3 cut(s) 24, 191, 522
Bsp143I GATC 8 cut(s) 12, 36, 45, 134, 209, 379, 422, 450
Bsp68I TCGCGA 1 cut(s) 203
BspACI CCGC 9 cut(s) 149, 185, 188, 270, 306, 335, 337, 370, 535
BspANI GGCC 4 cut(s) 22, 334, 340, 345
BspCNI CTCAG 2 cut(s) 375, 522
BspFNI CGCG 4 cut(s) 73, 203, 270, 337
BspLI GGNNCC 3 cut(s) 98, 325, 447
BspMI ACCTGC 2 cut(s) 355, 478
BspPI GGATC 4 cut(s) 53, 204, 387, 430
BspQI GCTCTTC 1 cut(s) 74
BspTNI GGTCTC 2 cut(s) 393, 519
BsrFI RCCGGY 1 cut(s) 145
BsrI ACTGG 1 cut(s) 325
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 4 cut(s) 23, 191, 192, 335
BssMI GATC 8 cut(s) 12, 36, 45, 134, 209, 379, 422, 450
BssNI GRCGYC 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 355
Bst6I CTCTTC 2 cut(s) 74, 200
BstACI GRCGYC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 9, 383, 530
BstDSI CCRYGG 1 cut(s) 335
BstFNI CGCG 4 cut(s) 73, 203, 270, 337
BstHHI GCGC 3 cut(s) 75, 181, 270
BstKTI GATC 8 cut(s) 15, 39, 48, 137, 212, 382, 425, 453
BstMAI GTCTC 2 cut(s) 393, 519
BstMBI GATC 8 cut(s) 12, 36, 45, 134, 209, 379, 422, 450
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 3 cut(s) 81, 151, 187
BstSCI CCNGG 4 cut(s) 190, 191, 340, 345
BstUI CGCG 4 cut(s) 73, 203, 270, 337
BstV1I GCAGC 2 cut(s) 96, 193
BstX2I RGATCY 4 cut(s) 12, 134, 209, 379
BstYI RGATCY 4 cut(s) 12, 134, 209, 379
Bsu36I CCTNAGG 1 cut(s) 530
BsuRI GGCC 4 cut(s) 22, 334, 340, 345
BtgI CCRYGG 1 cut(s) 335
BtuMI TCGCGA 1 cut(s) 203
BveI ACCTGC 2 cut(s) 355, 478
Cac8I GCNNGC 1 cut(s) 147
CfoI GCGC 3 cut(s) 75, 181, 270
Cfr10I RCCGGY 1 cut(s) 145
Cfr13I GGNCC 3 cut(s) 324, 339, 344
Cfr42I CCGCGG 1 cut(s) 338
Cfr9I CCCGGG 1 cut(s) 191
CseI GACGC 1 cut(s) 51
Csp6I GTAC 3 cut(s) 318, 356, 415
CviQI GTAC 3 cut(s) 318, 356, 415
DdeI CTNAG 3 cut(s) 9, 383, 530
DpnI GATC 8 cut(s) 14, 38, 47, 136, 211, 381, 424, 452
DpnII GATC 8 cut(s) 12, 36, 45, 134, 209, 379, 422, 450
Eam1104I CTCTTC 2 cut(s) 74, 200
EarI CTCTTC 2 cut(s) 74, 200
Eco31I GGTCTC 2 cut(s) 393, 519
Eco47I GGWCC 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 530
Eco88I CYCGRG 3 cut(s) 24, 191, 522
FaiI YATR 2 cut(s) 93, 159
FaqI GGGAC 3 cut(s) 19, 38, 337
Fnu4HI GCNGC 6 cut(s) 85, 182, 185, 188, 335, 338
Fsp4HI GCNGC 6 cut(s) 85, 182, 185, 188, 335, 338
FspBI CTAG 2 cut(s) 132, 138
GlaI GCGC 3 cut(s) 74, 180, 269
GluI GCNGC 6 cut(s) 85, 182, 185, 188, 335, 338
HaeIII GGCC 4 cut(s) 22, 334, 340, 345
HgaI GACGC 1 cut(s) 51
HhaI GCGC 3 cut(s) 75, 181, 270
Hin1I GRCGYC 1 cut(s) 62
Hin6I GCGC 3 cut(s) 73, 179, 268
HinP1I GCGC 3 cut(s) 73, 179, 268
HincII GTYRAC 2 cut(s) 109, 505
HindII GTYRAC 2 cut(s) 109, 505
HinfI GANTC 5 cut(s) 51, 171, 275, 284, 512
HpaI GTTAAC 1 cut(s) 109
Hpy166II GTNNAC 3 cut(s) 109, 415, 505
Hpy188I TCNGA 4 cut(s) 36, 50, 220, 384
Hpy188III TCNNGA 4 cut(s) 26, 202, 241, 262
Hpy8I GTNNAC 3 cut(s) 109, 415, 505
Hpy99I CGWCG 5 cut(s) 67, 224, 430, 472, 512
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4IV ACGT 3 cut(s) 120, 229, 411
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 151, 187
HpyF3I CTNAG 3 cut(s) 9, 383, 530
HpySE526I ACGT 3 cut(s) 120, 229, 411
Hsp92I GRCGYC 1 cut(s) 62
HspAI GCGC 3 cut(s) 73, 179, 268
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
KspAI GTTAAC 1 cut(s) 109
KspI CCGCGG 1 cut(s) 338
Kzo9I GATC 8 cut(s) 12, 36, 45, 134, 209, 379, 422, 450
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 3 cut(s) 221, 445, 546
Lsp1109I GCAGC 2 cut(s) 96, 193
MaeI CTAG 2 cut(s) 132, 138
MaeII ACGT 3 cut(s) 120, 229, 411
MaeIII GTNAC 1 cut(s) 253
MalI GATC 8 cut(s) 14, 38, 47, 136, 211, 381, 424, 452
MboI GATC 8 cut(s) 12, 36, 45, 134, 209, 379, 422, 450
MboII GAAGA 4 cut(s) 91, 217, 301, 493
MflI RGATCY 4 cut(s) 12, 134, 209, 379
MluCI AATT 1 cut(s) 115
MlyI GAGTC 4 cut(s) 60, 278, 284, 506
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 9 cut(s) 33, 66, 169, 258, 324, 378, 467, 471, 525
MroNI GCCGGC 1 cut(s) 145
MseI TTAA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 337
MspR9I CCNGG 4 cut(s) 192, 193, 342, 347
MvnI CGCG 4 cut(s) 73, 203, 270, 337
MwoI GCNNNNNNNGC 3 cut(s) 81, 151, 187
NaeI GCCGGC 1 cut(s) 147
NciI CCSGG 4 cut(s) 192, 193, 342, 347
NdeII GATC 8 cut(s) 12, 36, 45, 134, 209, 379, 422, 450
NgoMIV GCCGGC 1 cut(s) 145
NlaIV GGNNCC 3 cut(s) 98, 325, 447
NmeAIII GCCGAG 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 253
NruI TCGCGA 1 cut(s) 203
PaqCI CACCTGC 2 cut(s) 355, 478
PciSI GCTCTTC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 3 cut(s) 284, 446, 507
PdiI GCCGGC 1 cut(s) 147
PfeI GAWTC 1 cut(s) 171
PkrI GCNGC 6 cut(s) 86, 183, 186, 189, 336, 339
Ple19I CGATCG 1 cut(s) 453
PleI GAGTC 4 cut(s) 59, 278, 283, 506
PpsI GAGTC 4 cut(s) 59, 278, 283, 506
PspN4I GGNNCC 3 cut(s) 98, 325, 447
PspPI GGNCC 3 cut(s) 324, 339, 344
PsuI RGATCY 4 cut(s) 12, 134, 209, 379
PvuI CGATCG 1 cut(s) 453
RruI TCGCGA 1 cut(s) 203
RsaI GTAC 3 cut(s) 319, 357, 416
RsaNI GTAC 3 cut(s) 318, 356, 415
SacII CCGCGG 1 cut(s) 338
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 6 cut(s) 85, 182, 185, 188, 335, 338
Sau3AI GATC 8 cut(s) 12, 36, 45, 134, 209, 379, 422, 450
Sau96I GGNCC 3 cut(s) 324, 339, 344
SchI GAGTC 4 cut(s) 60, 278, 284, 506
ScrFI CCNGG 4 cut(s) 192, 193, 342, 347
Sfr303I CCGCGG 1 cut(s) 338
SgrBI CCGCGG 1 cut(s) 338
SinI GGWCC 1 cut(s) 324
SmaI CCCGGG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 1 cut(s) 115
SsiI CCGC 9 cut(s) 149, 185, 188, 270, 306, 335, 337, 370, 535
SspMI CTAG 2 cut(s) 132, 138
StyD4I CCNGG 4 cut(s) 190, 191, 340, 345
TaaI ACNGT 1 cut(s) 355
TaiI ACGT 3 cut(s) 123, 232, 414
TaqI TCGA 4 cut(s) 39, 174, 287, 476
TaqII GACCGA 1 cut(s) 341
TasI AATT 1 cut(s) 115
TauI GCSGC 4 cut(s) 187, 190, 337, 340
TfiI GAWTC 1 cut(s) 171
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 2 cut(s) 84, 181
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 4 cut(s) 174, 240, 308, 312
TspMI CCCGGG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 324
XmaI CCCGGG 1 cut(s) 191
XspI CTAG 2 cut(s) 132, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.