Rh4CG238500

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0015284
Physical Location & Seq
Reverse (-)
48315651 .. 48317811
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG238500.1

Sequence Viewer

Length: 513 bp
ATGGGGACTGAGATCTTGAGGCCACAGGATTGTCTGGTCGAGAGGATCCGAGTCTCTCCGGCGAAGAGTAATTACTATGGAAATCCCATTCCCATTCATGTGGCTAGCAACGTTAGATCTAGAAAGCCCGCGGTGAGGGCGGAGCAGAGGAGGCCGGAGCCGGCGGCGGTGGTCTCGAGGAGGTCCGGCCGGTCCAGCCCCGATGATTTGAAGGTGGAGAAGGTGACGATTTTGAGGCGGGGAGAGCCGCTGAGCCGGTTGAAGAAGGCGGCGAGCGACGGCCGGTTGGAGAGGTTGGGGCCGGGGCCGGGGCCGACGGTGGTGCCGAAGGAGGTAAATATTGTGGATTTGAGGGCTCCGGCGACGGACATGTATGCCGGATCGGCTTTCGCGATGTCGCCGGAGCCGAGCTCGCTCCCGTTGCCGTCGTTCTCGAGGAAGAAGAAGCAGGCGTCGAGGAGCTTTGACGACTCGGCGACCAGAGACCTGAGGCGTTTGCTTCGGCTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

170

Amino Acids

18.78

Weight (kDa)

10.71

Isoelectric Point (pI)

88.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PNRC PF15365 125 - 144 2.6e-08 Proline-rich nuclear receptor coactivator motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21570
fragaria_vesca FvH4_4g16740
malus_domestica MD03G1009700.v1.1
prunus_persica Prupe.1G145900_v2.0.a1
pyrus_communis pycom02g14100 pycom13g15250 pycom16g15000
rosa_chinensis RchiOBHm_Chr4g0420321
rosa_laevigata RLG00000007774
rosa_multiflora Rmu_sc0001767.1_g000003
rosa_roxburghii Rroxscaffold_5G00362970
rosa_rugosa Rorug04G0163400
rosa_samantha Rh4BG227300 Rh4CG238500 Rh4DG222900
rosa_wichuraiana Rw4G019350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 322
AccII CGCG 2 cut(s) 131, 392
AciI CCGC 8 cut(s) 129, 131, 140, 164, 167, 238, 248, 269
AclI AACGTT 1 cut(s) 111
AclWI GGATC 3 cut(s) 40, 53, 388
AcoI YGGCCR 2 cut(s) 187, 280
AcyI GRCGYC 1 cut(s) 452
AfiI CCNNNNNNNGG 2 cut(s) 135, 308
AflIII ACRYGT 1 cut(s) 369
AgsI TTSAA 2 cut(s) 211, 262
AluBI AGCT 2 cut(s) 411, 462
AluI AGCT 2 cut(s) 411, 462
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 3 cut(s) 58, 178, 477
AlwI GGATC 3 cut(s) 40, 53, 388
Ama87I CYCGRG 2 cut(s) 175, 433
AoxI GGCC 7 cut(s) 20, 152, 187, 280, 299, 305, 311
AspS9I GGNCC 5 cut(s) 183, 192, 299, 305, 311
AsuC2I CCSGG 2 cut(s) 303, 309
AsuHPI GGTGA 2 cut(s) 145, 235
AsuNHI GCTAGC 1 cut(s) 104
AvaI CYCGRG 2 cut(s) 175, 433
AvaII GGWCC 2 cut(s) 183, 192
AxyI CCTNAGG 1 cut(s) 488
BamHI GGATCC 1 cut(s) 45
BanI GGYRCC 1 cut(s) 322
BanII GRGCYC 2 cut(s) 358, 413
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
Bbv12I GWGCWC 1 cut(s) 413
BceAI ACGGC 2 cut(s) 295, 409
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BcnI CCSGG 2 cut(s) 303, 309
BcoDI GTCTC 3 cut(s) 58, 178, 477
BfaI CTAG 2 cut(s) 105, 120
BglI GCCNNNNNGGC 1 cut(s) 383
BglII AGATCT 2 cut(s) 12, 116
BisI GCNGC 3 cut(s) 165, 248, 270
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 3 cut(s) 166, 249, 271
Bme1390I CCNGG 2 cut(s) 303, 309
Bme18I GGWCC 2 cut(s) 183, 192
BmeT110I CYCGRG 2 cut(s) 175, 433
BmgT120I GGNCC 5 cut(s) 183, 192, 299, 305, 311
BmiI GGNNCC 8 cut(s) 47, 159, 300, 306, 312, 324, 357, 405
BmrFI CCNGG 2 cut(s) 303, 309
BmtI GCTAGC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 395, 427
Bpu1102I GCTNAGC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 37
BpuMI CCSGG 2 cut(s) 303, 309
BsaHI GRCGYC 1 cut(s) 452
BsaI GGTCTC 2 cut(s) 178, 477
BsaJI CCNNGG 3 cut(s) 129, 302, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 135, 308
Bse118I RCCGGY 4 cut(s) 160, 189, 255, 282
Bse21I CCTNAGG 1 cut(s) 488
BseDI CCNNGG 3 cut(s) 129, 302, 308
BseLI CCNNNNNNNGG 2 cut(s) 135, 308
BseMII CTCAG 2 cut(s) 242, 479
BseRI GAGGAG 3 cut(s) 163, 193, 472
BseX3I CGGCCG 2 cut(s) 187, 280
Bsh1236I CGCG 2 cut(s) 131, 392
Bsh1285I CGRYCG 2 cut(s) 190, 283
BshFI GGCC 7 cut(s) 22, 154, 189, 282, 301, 307, 313
BshNI GGYRCC 1 cut(s) 322
BsiEI CGRYCG 2 cut(s) 190, 283
BsiHKAI GWGCWC 1 cut(s) 413
BsiHKCI CYCGRG 2 cut(s) 175, 433
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 135, 308
BsmAI GTCTC 3 cut(s) 58, 178, 477
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 7 cut(s) 22, 154, 189, 282, 301, 307, 313
Bso31I GGTCTC 2 cut(s) 178, 477
BsoBI CYCGRG 2 cut(s) 175, 433
Bsp1286I GDGCHC 2 cut(s) 358, 413
Bsp143I GATC 4 cut(s) 12, 45, 116, 380
Bsp1720I GCTNAGC 1 cut(s) 251
Bsp68I TCGCGA 1 cut(s) 392
BspACI CCGC 8 cut(s) 129, 131, 140, 164, 167, 238, 248, 269
BspANI GGCC 7 cut(s) 22, 154, 189, 282, 301, 307, 313
BspCNI CTCAG 2 cut(s) 243, 480
BspFNI CGCG 2 cut(s) 131, 392
BspLI GGNNCC 8 cut(s) 47, 159, 300, 306, 312, 324, 357, 405
BspOI GCTAGC 1 cut(s) 108
BspPI GGATC 3 cut(s) 40, 53, 388
BspT107I GGYRCC 1 cut(s) 322
BspTNI GGTCTC 2 cut(s) 178, 477
BsrFI RCCGGY 4 cut(s) 160, 189, 255, 282
BssAI RCCGGY 4 cut(s) 160, 189, 255, 282
BssECI CCNNGG 3 cut(s) 129, 302, 308
BssMI GATC 4 cut(s) 12, 45, 116, 380
BssNI GRCGYC 1 cut(s) 452
Bst4CI ACNGT 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 452
BstC8I GCNNGC 6 cut(s) 106, 129, 162, 274, 413, 450
BstDEI CTNAG 3 cut(s) 9, 251, 488
BstDSI CCRYGG 1 cut(s) 129
BstFNI CGCG 2 cut(s) 131, 392
BstKTI GATC 4 cut(s) 15, 48, 119, 383
BstMAI GTCTC 3 cut(s) 58, 178, 477
BstMBI GATC 4 cut(s) 12, 45, 116, 380
BstMCI CGRYCG 2 cut(s) 190, 283
BstMWI GCNNNNNNNGC 7 cut(s) 137, 151, 195, 244, 383, 412, 421
BstNSI RCATGY 1 cut(s) 373
BstSCI CCNGG 2 cut(s) 301, 307
BstUI CGCG 2 cut(s) 131, 392
BstX2I RGATCY 3 cut(s) 12, 45, 116
BstXI CCANNNNNNTGG 1 cut(s) 100
BstYI RGATCY 3 cut(s) 12, 45, 116
BstZI CGGCCG 2 cut(s) 187, 280
Bsu36I CCTNAGG 1 cut(s) 488
BsuRI GGCC 7 cut(s) 22, 154, 189, 282, 301, 307, 313
BtgI CCRYGG 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 407
BtuMI TCGCGA 1 cut(s) 392
Cac8I GCNNGC 6 cut(s) 106, 129, 162, 274, 413, 450
Cfr10I RCCGGY 4 cut(s) 160, 189, 255, 282
Cfr13I GGNCC 5 cut(s) 183, 192, 299, 305, 311
Cfr42I CCGCGG 1 cut(s) 132
CseI GACGC 1 cut(s) 441
CviAII CATG 2 cut(s) 98, 370
DdeI CTNAG 3 cut(s) 9, 251, 488
DpnI GATC 4 cut(s) 14, 47, 118, 382
DpnII GATC 4 cut(s) 12, 45, 116, 380
EaeI YGGCCR 2 cut(s) 187, 280
EagI CGGCCG 2 cut(s) 187, 280
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
EciI GGCGGA 1 cut(s) 155
Ecl136II GAGCTC 1 cut(s) 411
EclXI CGGCCG 2 cut(s) 187, 280
Eco24I GRGCYC 2 cut(s) 358, 413
Eco31I GGTCTC 2 cut(s) 178, 477
Eco47I GGWCC 2 cut(s) 183, 192
Eco52I CGGCCG 2 cut(s) 187, 280
Eco53kI GAGCTC 1 cut(s) 411
Eco81I CCTNAGG 1 cut(s) 488
Eco88I CYCGRG 2 cut(s) 175, 433
EcoICRI GAGCTC 1 cut(s) 411
EcoT38I GRGCYC 2 cut(s) 358, 413
FaeI CATG 2 cut(s) 101, 373
FaiI YATR 4 cut(s) 78, 99, 371, 375
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 97, 369
FauI CCCGC 2 cut(s) 136, 231
Fnu4HI GCNGC 3 cut(s) 165, 248, 270
FriOI GRGCYC 2 cut(s) 358, 413
Fsp4HI GCNGC 3 cut(s) 165, 248, 270
FspBI CTAG 2 cut(s) 105, 120
GluI GCNGC 3 cut(s) 165, 248, 270
HaeIII GGCC 7 cut(s) 22, 154, 189, 282, 301, 307, 313
HgaI GACGC 1 cut(s) 441
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 2 cut(s) 101, 373
HinfI GANTC 2 cut(s) 51, 470
HphI GGTGA 2 cut(s) 145, 235
Hpy188I TCNGA 1 cut(s) 50
Hpy188III TCNNGA 6 cut(s) 16, 40, 120, 175, 391, 433
Hpy99I CGWCG 5 cut(s) 281, 319, 367, 430, 457
HpyAV CCTTC 4 cut(s) 205, 214, 259, 322
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 7 cut(s) 137, 151, 195, 244, 383, 412, 421
HpyF3I CTNAG 3 cut(s) 9, 251, 488
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 2 cut(s) 101, 373
KroI GCCGGC 1 cut(s) 160
KroNI GCCGGC 1 cut(s) 162
KspI CCGCGG 1 cut(s) 132
Kzo9I GATC 4 cut(s) 12, 45, 116, 380
LmnI GCTCC 6 cut(s) 142, 157, 361, 403, 420, 459
MaeI CTAG 2 cut(s) 105, 120
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 223
MalI GATC 4 cut(s) 14, 47, 118, 382
MboI GATC 4 cut(s) 12, 45, 116, 380
MboII GAAGA 4 cut(s) 76, 274, 451, 454
MflI RGATCY 3 cut(s) 12, 45, 116
MhlI GDGCHC 2 cut(s) 358, 413
MluCI AATT 1 cut(s) 70
MlyI GAGTC 2 cut(s) 60, 464
MmeI TCCRAC 1 cut(s) 267
MroNI GCCGGC 1 cut(s) 160
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 2 cut(s) 131, 250
MspR9I CCNGG 2 cut(s) 303, 309
MvnI CGCG 2 cut(s) 131, 392
MwoI GCNNNNNNNGC 7 cut(s) 137, 151, 195, 244, 383, 412, 421
NaeI GCCGGC 1 cut(s) 162
NciI CCSGG 2 cut(s) 303, 309
NdeII GATC 4 cut(s) 12, 45, 116, 380
NgoMIV GCCGGC 1 cut(s) 160
NheI GCTAGC 1 cut(s) 104
NlaIII CATG 2 cut(s) 101, 373
NlaIV GGNNCC 8 cut(s) 47, 159, 300, 306, 312, 324, 357, 405
NmeAIII GCCGAG 2 cut(s) 432, 452
NmuCI GTSAC 1 cut(s) 223
NruI TCGCGA 1 cut(s) 392
NspI RCATGY 1 cut(s) 373
PaeR7I CTCGAG 2 cut(s) 175, 433
PciI ACATGT 1 cut(s) 369
PcsI WCGNNNNNNNCGW 3 cut(s) 323, 389, 404
PdiI GCCGGC 1 cut(s) 162
PkrI GCNGC 3 cut(s) 166, 249, 271
PleI GAGTC 2 cut(s) 59, 464
PpsI GAGTC 2 cut(s) 59, 464
PscI ACATGT 1 cut(s) 369
Psp124BI GAGCTC 1 cut(s) 413
Psp1406I AACGTT 1 cut(s) 111
PspN4I GGNNCC 8 cut(s) 47, 159, 300, 306, 312, 324, 357, 405
PspPI GGNCC 5 cut(s) 183, 192, 299, 305, 311
PsuI RGATCY 3 cut(s) 12, 45, 116
RruI TCGCGA 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 98
SacI GAGCTC 1 cut(s) 413
SacII CCGCGG 1 cut(s) 132
SatI GCNGC 3 cut(s) 165, 248, 270
Sau3AI GATC 4 cut(s) 12, 45, 116, 380
Sau96I GGNCC 5 cut(s) 183, 192, 299, 305, 311
SchI GAGTC 2 cut(s) 60, 464
ScrFI CCNGG 2 cut(s) 303, 309
SduI GDGCHC 2 cut(s) 358, 413
SetI ASST 9 cut(s) 114, 185, 216, 225, 296, 336, 413, 464, 489
Sfr274I CTCGAG 2 cut(s) 175, 433
Sfr303I CCGCGG 1 cut(s) 132
SgrBI CCGCGG 1 cut(s) 132
SinI GGWCC 2 cut(s) 183, 192
SlaI CTCGAG 2 cut(s) 175, 433
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 3 cut(s) 16, 175, 433
SmoI CTYRAG 3 cut(s) 16, 175, 433
Sse9I AATT 1 cut(s) 70
SsiI CCGC 8 cut(s) 129, 131, 140, 164, 167, 238, 248, 269
SspI AATATT 1 cut(s) 340
SspMI CTAG 2 cut(s) 105, 120
SstI GAGCTC 1 cut(s) 413
StyD4I CCNGG 2 cut(s) 301, 307
TaaI ACNGT 1 cut(s) 319
TaiI ACGT 1 cut(s) 114
TaqI TCGA 5 cut(s) 39, 176, 434, 455, 507
TasI AATT 1 cut(s) 70
TauI GCSGC 3 cut(s) 167, 250, 272
TseFI GTSAC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 380
VpaK11BI GGWCC 2 cut(s) 183, 192
XbaI TCTAGA 1 cut(s) 119
XceI RCATGY 1 cut(s) 373
XhoI CTCGAG 2 cut(s) 175, 433
XspI CTAG 2 cut(s) 105, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.