Prupe.1G145900_v2.0.a1

Proline-rich nuclear receptor coactivator motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015284
Physical Location & Seq
Forward (+)
11458165 .. 11459210
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G145900.1

Sequence Viewer

Length: 546 bp
ATGGGGACAGAGATATTGAGGCCTCAGGATTGTCTGATCGAACGGATCAGAGTCCCTCCGGCGTCGTTTGTGCGCCGGAAGAGTTACTATGGCAACCCCGTACCTAACCAGAATTACGTTTCTAACCCTAGACCTAGAAAACAGGTGGTGCGCTCCGACCCGAGGAGGATCCACATGCAGCCGGCGGTGGTCTCCAAGAGATCCAGCTCCGAAGACCTTCGCGGCTTCAAGATGGAGAAAGTCACGATCTTGAGGCGTGGTGAGTCGCTGGATTCGAAGACGAAAGGAAATAAGGGTGGATTGGTCGTGACCGGGACCGAGAGGTTGGGACCCGACCCAGAAATGGTGCCGAAGCAGGTGCGGATCGTGGATCTGAAGCCTCCGGTGGAGGGAAAGACCGACATGTACGCCGGATCGGCGTTCGCGGTGTCGCCGGAGCCGAGTGCGCTCCCGCTGCCGTCGTTTTCGAAGAAGAAGCAGGTATCGAAGATCGTCGACGGTGACTCGGCGACTCGAGACCTGCGGCGGTTGCTCCGGTTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PNRC

Protein Analysis

182

Amino Acids

20.25

Weight (kDa)

10.3

Isoelectric Point (pI)

71.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015284)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21570
fragaria_vesca FvH4_4g16740
malus_domestica MD03G1009700.v1.1
prunus_persica Prupe.1G145900_v2.0.a1
pyrus_communis pycom02g14100 pycom13g15250 pycom16g15000
rosa_chinensis RchiOBHm_Chr4g0420321
rosa_laevigata RLG00000007774
rosa_multiflora Rmu_sc0001767.1_g000003
rosa_roxburghii Rroxscaffold_5G00362970
rosa_rugosa Rorug04G0163400
rosa_samantha Rh4BG227300 Rh4CG238500 Rh4DG222900
rosa_wichuraiana Rw4G019350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 346
Acc36I ACCTGC 3 cut(s) 346, 469, 528
AccB1I GGYRCC 1 cut(s) 346
AccI GTMKAC 1 cut(s) 495
AccII CGCG 2 cut(s) 222, 425
AciI CCGC 7 cut(s) 185, 222, 361, 425, 452, 523, 526
AclWI GGATC 7 cut(s) 53, 163, 176, 195, 371, 378, 421
AcuI CTGAAG 1 cut(s) 395
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 2 cut(s) 102, 407
AfiI CCNNNNNNNGG 3 cut(s) 162, 343, 389
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 1 cut(s) 229
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
Alw26I GTCTC 2 cut(s) 196, 510
AlwI GGATC 7 cut(s) 53, 163, 176, 195, 371, 378, 421
Ama87I CYCGRG 2 cut(s) 160, 513
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 2 cut(s) 178, 454
Asp700I GAANNNNTTC 1 cut(s) 216
AspLEI GCGC 3 cut(s) 75, 153, 448
AspS9I GGNCC 2 cut(s) 315, 329
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 2 cut(s) 272, 512
AsuII TTCGAA 2 cut(s) 275, 467
AvaI CYCGRG 2 cut(s) 160, 513
AvaII GGWCC 2 cut(s) 315, 329
AxyI CCTNAGG 1 cut(s) 24
BamHI GGATCC 1 cut(s) 168
BanI GGYRCC 1 cut(s) 346
BbsI GAAGAC 2 cut(s) 219, 284
BbvI GCAGC 2 cut(s) 190, 441
BccI CCATC 1 cut(s) 226
BceAI ACGGC 1 cut(s) 442
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 196, 510
BfaI CTAG 2 cut(s) 129, 135
BfuAI ACCTGC 3 cut(s) 346, 469, 528
BglI GCCNNNNNGGC 1 cut(s) 416
BisI GCNGC 4 cut(s) 179, 223, 455, 524
BlsI GCNGC 4 cut(s) 180, 224, 456, 525
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 2 cut(s) 315, 329
BmeT110I CYCGRG 2 cut(s) 160, 513
BmgT120I GGNCC 2 cut(s) 315, 329
BmiI GGNNCC 6 cut(s) 170, 316, 330, 331, 348, 438
BmrFI CCNGG 1 cut(s) 313
BpiI GAAGAC 2 cut(s) 219, 284
Bpu14I TTCGAA 2 cut(s) 275, 467
BpuEI CTTGAG 1 cut(s) 271
BpuMI CCSGG 1 cut(s) 313
BsaHI GRCGYC 1 cut(s) 62
BsaI GGTCTC 2 cut(s) 196, 510
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 2 cut(s) 382, 534
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 343, 389
Bse118I RCCGGY 1 cut(s) 181
Bse21I CCTNAGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 161
BseLI CCNNNNNNNGG 3 cut(s) 162, 343, 389
BseMII CTCAG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 178
BseXI GCAGC 2 cut(s) 190, 441
Bsh1236I CGCG 2 cut(s) 222, 425
BshFI GGCC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 346
BsiHKCI CYCGRG 2 cut(s) 160, 513
BsiSI CCGG 8 cut(s) 59, 76, 182, 312, 383, 411, 434, 535
BslFI GGGAC 4 cut(s) 19, 38, 328, 342
BslI CCNNNNNNNGG 3 cut(s) 162, 343, 389
BsmAI GTCTC 2 cut(s) 196, 510
BsmFI GGGAC 4 cut(s) 19, 38, 328, 342
BsnI GGCC 1 cut(s) 22
Bso31I GGTCTC 2 cut(s) 196, 510
BsoBI CYCGRG 2 cut(s) 160, 513
Bsp119I TTCGAA 2 cut(s) 275, 467
Bsp143I GATC 9 cut(s) 36, 45, 168, 200, 246, 363, 370, 413, 489
BspACI CCGC 7 cut(s) 185, 222, 361, 425, 452, 523, 526
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 37
BspFNI CGCG 2 cut(s) 222, 425
BspLI GGNNCC 6 cut(s) 170, 316, 330, 331, 348, 438
BspMI ACCTGC 3 cut(s) 346, 469, 528
BspPI GGATC 7 cut(s) 53, 163, 176, 195, 371, 378, 421
BspT104I TTCGAA 2 cut(s) 275, 467
BspT107I GGYRCC 1 cut(s) 346
BspTNI GGTCTC 2 cut(s) 196, 510
BsrFI RCCGGY 1 cut(s) 181
BssAI RCCGGY 1 cut(s) 181
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 9 cut(s) 36, 45, 168, 200, 246, 363, 370, 413, 489
BssNI GRCGYC 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 500
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 1 cut(s) 62
BstBI TTCGAA 2 cut(s) 275, 467
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 1 cut(s) 24
BstFNI CGCG 2 cut(s) 222, 425
BstHHI GCGC 3 cut(s) 75, 153, 448
BstKTI GATC 9 cut(s) 39, 48, 171, 203, 249, 366, 373, 416, 492
BstMAI GTCTC 2 cut(s) 196, 510
BstMBI GATC 9 cut(s) 36, 45, 168, 200, 246, 363, 370, 413, 489
BstMWI GCNNNNNNNGC 4 cut(s) 416, 445, 454, 529
BstNSI RCATGY 2 cut(s) 178, 406
BstSCI CCNGG 1 cut(s) 311
BstUI CGCG 2 cut(s) 222, 425
BstV1I GCAGC 2 cut(s) 190, 441
BstV2I GAAGAC 2 cut(s) 219, 284
BstX2I RGATCY 3 cut(s) 168, 200, 370
BstYI RGATCY 3 cut(s) 168, 200, 370
Bsu36I CCTNAGG 1 cut(s) 24
BsuRI GGCC 1 cut(s) 22
BveI ACCTGC 3 cut(s) 346, 469, 528
Cac8I GCNNGC 1 cut(s) 183
CfoI GCGC 3 cut(s) 75, 153, 448
Cfr10I RCCGGY 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 315, 329
CseI GACGC 1 cut(s) 51
Csp6I GTAC 2 cut(s) 101, 406
CviAII CATG 2 cut(s) 175, 403
CviJI RGCY 6 cut(s) 22, 181, 207, 225, 379, 439
CviKI_1 RGCY 6 cut(s) 22, 181, 207, 225, 379, 439
CviQI GTAC 2 cut(s) 101, 406
DdeI CTNAG 1 cut(s) 24
DpnI GATC 9 cut(s) 38, 47, 170, 202, 248, 365, 372, 415, 491
DpnII GATC 9 cut(s) 36, 45, 168, 200, 246, 363, 370, 413, 489
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Eco147I AGGCCT 1 cut(s) 22
Eco31I GGTCTC 2 cut(s) 196, 510
Eco47I GGWCC 2 cut(s) 315, 329
Eco57I CTGAAG 1 cut(s) 395
Eco81I CCTNAGG 1 cut(s) 24
Eco88I CYCGRG 2 cut(s) 160, 513
EcoO109I RGGNCCY 1 cut(s) 329
FaeI CATG 2 cut(s) 178, 406
FaiI YATR 3 cut(s) 90, 176, 404
FaqI GGGAC 4 cut(s) 19, 38, 328, 342
FatI CATG 2 cut(s) 174, 402
FauI CCCGC 1 cut(s) 459
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 4 cut(s) 179, 223, 455, 524
Fsp4HI GCNGC 4 cut(s) 179, 223, 455, 524
FspBI CTAG 2 cut(s) 129, 135
GlaI GCGC 3 cut(s) 74, 152, 447
GluI GCNGC 4 cut(s) 179, 223, 455, 524
HaeIII GGCC 1 cut(s) 22
HapII CCGG 8 cut(s) 59, 76, 182, 312, 383, 411, 434, 535
HgaI GACGC 1 cut(s) 51
HhaI GCGC 3 cut(s) 75, 153, 448
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 2 cut(s) 178, 406
Hin6I GCGC 3 cut(s) 73, 151, 446
HinP1I GCGC 3 cut(s) 73, 151, 446
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HinfI GANTC 5 cut(s) 51, 263, 272, 503, 511
HpaII CCGG 8 cut(s) 59, 76, 182, 312, 383, 411, 434, 535
HphI GGTGA 2 cut(s) 272, 512
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 5 cut(s) 36, 50, 157, 211, 375
Hpy188III TCNNGA 6 cut(s) 26, 229, 244, 250, 307, 515
Hpy8I GTNNAC 1 cut(s) 496
Hpy99I CGWCG 4 cut(s) 67, 463, 497, 500
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 500
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 445, 454, 529
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 2 cut(s) 178, 406
HspAI GCGC 3 cut(s) 73, 151, 446
KflI GGGWCCC 1 cut(s) 329
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 9 cut(s) 36, 45, 168, 200, 246, 363, 370, 413, 489
LmnI GCTCC 5 cut(s) 158, 212, 436, 453, 537
Lsp1109I GCAGC 2 cut(s) 190, 441
MaeI CTAG 2 cut(s) 129, 135
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 4 cut(s) 83, 241, 307, 500
MalI GATC 9 cut(s) 38, 47, 170, 202, 248, 365, 372, 415, 491
MboI GATC 9 cut(s) 36, 45, 168, 200, 246, 363, 370, 413, 489
MboII GAAGA 6 cut(s) 91, 224, 289, 481, 484, 499
MflI RGATCY 3 cut(s) 168, 200, 370
MluCI AATT 1 cut(s) 112
MlyI GAGTC 4 cut(s) 60, 272, 497, 505
MmeI TCCRAC 2 cut(s) 180, 519
MnlI CCTC 9 cut(s) 12, 33, 66, 156, 159, 246, 315, 382, 390
MroNI GCCGGC 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 454
MspI CCGG 8 cut(s) 59, 76, 182, 312, 383, 411, 434, 535
MspR9I CCNGG 1 cut(s) 313
MvnI CGCG 2 cut(s) 222, 425
MwoI GCNNNNNNNGC 4 cut(s) 416, 445, 454, 529
NaeI GCCGGC 1 cut(s) 183
NciI CCSGG 1 cut(s) 313
NdeII GATC 9 cut(s) 36, 45, 168, 200, 246, 363, 370, 413, 489
NgoMIV GCCGGC 1 cut(s) 181
NlaIII CATG 2 cut(s) 178, 406
NlaIV GGNNCC 6 cut(s) 170, 316, 330, 331, 348, 438
NmeAIII GCCGAG 2 cut(s) 465, 485
NmuCI GTSAC 3 cut(s) 241, 307, 500
NspI RCATGY 2 cut(s) 178, 406
NspV TTCGAA 2 cut(s) 275, 467
PaeR7I CTCGAG 1 cut(s) 513
PaqCI CACCTGC 1 cut(s) 346
PceI AGGCCT 1 cut(s) 22
PciI ACATGT 1 cut(s) 402
PcsI WCGNNNNNNNCGW 2 cut(s) 272, 437
PdiI GCCGGC 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 4 cut(s) 180, 224, 456, 525
PleI GAGTC 4 cut(s) 59, 271, 497, 505
PpsI GAGTC 4 cut(s) 59, 271, 497, 505
PpuMI RGGWCCY 1 cut(s) 329
PscI ACATGT 1 cut(s) 402
Psp5II RGGWCCY 1 cut(s) 329
PspN4I GGNNCC 6 cut(s) 170, 316, 330, 331, 348, 438
PspPI GGNCC 2 cut(s) 315, 329
PspPPI RGGWCCY 1 cut(s) 329
PsuI RGATCY 3 cut(s) 168, 200, 370
RsaI GTAC 2 cut(s) 102, 407
RsaNI GTAC 2 cut(s) 101, 406
SalI GTCGAC 1 cut(s) 494
SatI GCNGC 4 cut(s) 179, 223, 455, 524
Sau3AI GATC 9 cut(s) 36, 45, 168, 200, 246, 363, 370, 413, 489
Sau96I GGNCC 2 cut(s) 315, 329
SchI GAGTC 4 cut(s) 60, 272, 497, 505
ScrFI CCNGG 1 cut(s) 313
Sfr274I CTCGAG 1 cut(s) 513
SfuI TTCGAA 2 cut(s) 275, 467
SgrDI CGTCGACG 1 cut(s) 494
SinI GGWCC 2 cut(s) 315, 329
SlaI CTCGAG 1 cut(s) 513
SmlI CTYRAG 2 cut(s) 250, 513
SmoI CTYRAG 2 cut(s) 250, 513
Sse9I AATT 1 cut(s) 112
SseBI AGGCCT 1 cut(s) 22
SsiI CCGC 7 cut(s) 185, 222, 361, 425, 452, 523, 526
SspMI CTAG 2 cut(s) 129, 135
StuI AGGCCT 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 311
TaaI ACNGT 1 cut(s) 500
TaiI ACGT 1 cut(s) 120
TaqI TCGA 6 cut(s) 39, 275, 467, 485, 495, 514
TaqII GACCGA 2 cut(s) 332, 413
TasI AATT 1 cut(s) 112
TauI GCSGC 2 cut(s) 225, 526
TfiI GAWTC 1 cut(s) 272
TseFI GTSAC 3 cut(s) 241, 307, 500
TseI GCWGC 2 cut(s) 178, 454
Tsp45I GTSAC 3 cut(s) 241, 307, 500
TspGWI ACGGA 1 cut(s) 58
VpaK11BI GGWCC 2 cut(s) 315, 329
XceI RCATGY 2 cut(s) 178, 406
XhoI CTCGAG 1 cut(s) 513
XmiI GTMKAC 1 cut(s) 495
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 2 cut(s) 129, 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.