Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016308

Physical Location & Seq

Genomic Coordinates Reverse (-)

23000773 .. 23004040

Gene Structure 3268 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGGAAGAGCGCCGTGCTGTGAAAAAGTTGGGCTAAAAAGAGGAAGGTGGACAGCCGAAGAAGACGAAATCTTGACAAACTACATTCAACTCCATGGAGAAGGCTCTTGGAGATCTTTGCCCAAGAATGCAGGTTTGCTAAGGTGCGGGAAGAGTTGCAGACTGAGGTGGATAAATTATCTGAGGACTGACTTGAGGAGAGGGAACATTACTCAAGAGGAGGAAGAAACCATAGTAAAGTTGCACACTGCTTTGGGTAATAGGTGGTCATTGATAGCTGCTCAGTTGCCGGGAAGAACAGATAATGAGATTAAAAACTACTGGAACTCTCATTTGAGTCGCAAAATCTACACCTTCACCAAGCTTATGGGAAACGAATGTCTCATCCCCACCATGATCAATAATGTATCGAAGACGGCTAATGCGAAATCAAAGCGCAAAGGACGTACAAGCAGATCCACCATGAAAAACAAGAACAAGCTTAACAAGAATGTTACAGTGCCAGCCTCATTTCCACAAGTCATAAAGCAAGCTTATGTGAATGATGTGTTTGAATCGTTAACCAGAGAAAACGCAGGTCAAGTGGAAACCAGTCCTTTAATGGGCTCGGGGTGTTGGTCCCCCAAAGAAAAGGATGGAAATGAAGAAGAGGTAGAGACAATAAGAATGTTGGGTGGTGTGCAAGGTTCTTGCTTGGATATTACAGCTGCAGGGATGAGTAGTTCAACAACTACTGCAATATGTGTAGCTAATAATGGTGAAAAAGAGGCATTGGACCCAAGTGAATGTGTAGACAGTGATGCAAGTGTGAATCATAAGCCAAGTGGGAAGACTACTGCTATAGGGTTTAAGGAGCAGAGAGGAAATGAGGTTATGGATTTTACAGATGACCATGAGGTAACCATAAAGAGTGACCATCAAGGTATTTGGAGCTCAAATATTGAAGGGAGCTGTGATGAGATGTATGCTTTCTCTTCCCCATTGAATGCAGCCTTTGATGATCATGAATGGCTCGATTGGGATTGGTTAGGTGGTGATGGAGGCGGTGGTCTTCAATGTCATAATAATGAGGAGTTGGATTTATGGGATGAAGGGGAGGTGAGGATACCTTGGTTATGGGAGAGTGGCAATGTTGATGATCAGAGAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

384

Amino Acids

42.8

Weight (kDa)

5.37

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	4.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1.8e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	2e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19310
malus_domestica	MD13G1158000.v1.1 MD16G1158800.v1.1
prunus_persica	Prupe.1G125300_v2.0.a1
pyrus_communis	pycom13g13510
rosa_chinensis	RchiOBHm_Chr4g0424331
rosa_laevigata	RLG00000007485
rosa_multiflora	Rmu_sc0002260.1_g000004
rosa_roxburghii	Rroxscaffold_5G00366280
rosa_rugosa	Rorug04G0195900
rosa_samantha	Rh4AG252800 Rh4BG258200 Rh4CG269100 Rh4DG252600
rosa_wichuraiana	Rw4G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	122, 566
AccI	GTMKAC	1 cut(s)	792
AciI	CCGC	2 cut(s)	147, 1044
AclWI	GGATC	1 cut(s)	450
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	6 cut(s)	89, 554, 726, 944, 985, 1055
AloI	GAACNNNNNNTCC	2 cut(s)	706, 738
AluBI	AGCT	8 cut(s)	278, 364, 481, 533, 707, 749, 933, 951
AluI	AGCT	8 cut(s)	278, 364, 481, 533, 707, 749, 933, 951
Alw21I	GWGCWC	1 cut(s)	935
Alw26I	GTCTC	2 cut(s)	386, 650
AlwI	GGATC	1 cut(s)	450
Ama87I	CYCGRG	1 cut(s)	607
ApeKI	GCWGC	3 cut(s)	278, 707, 989
AspLEI	GCGC	2 cut(s)	13, 438
AspS9I	GGNCC	2 cut(s)	618, 775
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	4 cut(s)	349, 770, 1046, 1111
AvaI	CYCGRG	1 cut(s)	607
AvaII	GGWCC	2 cut(s)	618, 775
BaeI	ACNNNNGTAYC	2 cut(s)	1097, 1130
BanII	GRGCYC	2 cut(s)	608, 935
BbsI	GAAGAC	4 cut(s)	69, 419, 836, 1043
Bbv12I	GWGCWC	1 cut(s)	935
BbvI	GCAGC	3 cut(s)	265, 694, 1001
BccI	CCATC	3 cut(s)	629, 924, 1031
BceAI	ACGGC	1 cut(s)	432
BciVI	GTATCC	1 cut(s)	1098
BclI	TGATCA	3 cut(s)	396, 1000, 1138
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	386, 650
BfmI	CTRYAG	2 cut(s)	708, 840
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	2 cut(s)	122, 566
BfuI	GTATCC	1 cut(s)	1098
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	3 cut(s)	279, 708, 990
BlsI	GCNGC	3 cut(s)	280, 709, 991
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	2 cut(s)	618, 775
BmeT110I	CYCGRG	1 cut(s)	607
BmgT120I	GGNCC	2 cut(s)	618, 775
BmiI	GGNNCC	2 cut(s)	620, 777
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	790
BpiI	GAAGAC	4 cut(s)	69, 419, 836, 1043
Bpu10I	CCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	2 cut(s)	198, 214
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	94, 1109
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	2 cut(s)	326, 591
Bse3DI	GCAATG	1 cut(s)	1135
BseDI	CCNNGG	2 cut(s)	94, 1109
BseGI	GGATG	4 cut(s)	384, 640, 720, 1093
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	1 cut(s)	1135
BseMII	CTCAG	3 cut(s)	155, 173, 296
BseNI	ACTGG	2 cut(s)	326, 591
BseRI	GAGGAG	3 cut(s)	211, 233, 1085
BseXI	GCAGC	3 cut(s)	265, 694, 1001
BsiHKAI	GWGCWC	1 cut(s)	935
BsiHKCI	CYCGRG	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	604
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	2 cut(s)	386, 650
BsmFI	GGGAC	1 cut(s)	604
BsmI	GAATGC	2 cut(s)	133, 991
BsoBI	CYCGRG	1 cut(s)	607
Bsp1286I	GDGCHC	2 cut(s)	608, 935
Bsp143I	GATC	5 cut(s)	113, 396, 455, 1000, 1138
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	2 cut(s)	147, 1044
BspCNI	CTCAG	3 cut(s)	156, 174, 295
BspHI	TCATGA	1 cut(s)	1003
BspLI	GGNNCC	2 cut(s)	620, 777
BspMAI	CTGCAG	1 cut(s)	712
BspMI	ACCTGC	2 cut(s)	122, 566
BspPI	GGATC	1 cut(s)	450
BsrDI	GCAATG	1 cut(s)	1135
BsrI	ACTGG	2 cut(s)	326, 591
BssECI	CCNNGG	2 cut(s)	94, 1109
BssMI	GATC	5 cut(s)	113, 396, 455, 1000, 1138
BssT1I	CCWWGG	2 cut(s)	94, 1109
Bst4CI	ACNGT	2 cut(s)	499, 797
Bst6I	CTCTTC	3 cut(s)	146, 642, 979
BstC8I	GCNNGC	2 cut(s)	504, 531
BstDEI	CTNAG	4 cut(s)	140, 164, 182, 282
BstDSI	CCRYGG	1 cut(s)	94
BstEII	GGTNACC	1 cut(s)	898
BstF5I	GGATG	4 cut(s)	384, 640, 720, 1093
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 438
BstKTI	GATC	5 cut(s)	116, 399, 458, 1003, 1141
BstMAI	GTCTC	2 cut(s)	386, 650
BstMBI	GATC	5 cut(s)	113, 396, 455, 1000, 1138
BstPI	GGTNACC	1 cut(s)	898
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	708, 840
BstV1I	GCAGC	3 cut(s)	265, 694, 1001
BstV2I	GAAGAC	4 cut(s)	69, 419, 836, 1043
BstX2I	RGATCY	2 cut(s)	113, 455
BstXI	CCANNNNNNTGG	1 cut(s)	367
BstYI	RGATCY	2 cut(s)	113, 455
BsuI	GTATCC	1 cut(s)	1098
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	4 cut(s)	384, 640, 720, 1093
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	246, 504, 802
BveI	ACCTGC	2 cut(s)	122, 566
Cac8I	GCNNGC	2 cut(s)	504, 531
CciI	TCATGA	1 cut(s)	1003
CfoI	GCGC	2 cut(s)	13, 438
Cfr13I	GGNCC	2 cut(s)	618, 775
Csp6I	GTAC	1 cut(s)	447
CviAII	CATG	5 cut(s)	95, 394, 463, 893, 1004
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	4 cut(s)	140, 164, 182, 282
DpnI	GATC	5 cut(s)	115, 398, 457, 1002, 1140
DpnII	GATC	5 cut(s)	113, 396, 455, 1000, 1138
Eam1104I	CTCTTC	3 cut(s)	146, 642, 979
EarI	CTCTTC	3 cut(s)	146, 642, 979
Ecl136II	GAGCTC	1 cut(s)	933
Eco130I	CCWWGG	2 cut(s)	94, 1109
Eco24I	GRGCYC	2 cut(s)	608, 935
Eco47I	GGWCC	2 cut(s)	618, 775
Eco53kI	GAGCTC	1 cut(s)	933
Eco88I	CYCGRG	1 cut(s)	607
Eco91I	GGTNACC	1 cut(s)	898
EcoICRI	GAGCTC	1 cut(s)	933
EcoO65I	GGTNACC	1 cut(s)	898
EcoT14I	CCWWGG	2 cut(s)	94, 1109
EcoT38I	GRGCYC	2 cut(s)	608, 935
ErhI	CCWWGG	2 cut(s)	94, 1109
FaeI	CATG	5 cut(s)	98, 397, 466, 896, 1007
FaqI	GGGAC	1 cut(s)	604
FatI	CATG	5 cut(s)	94, 393, 462, 892, 1003
FauI	CCCGC	1 cut(s)	140
FbaI	TGATCA	3 cut(s)	396, 1000, 1138
FblI	GTMKAC	1 cut(s)	792
Fnu4HI	GCNGC	3 cut(s)	279, 708, 990
FokI	GGATG	4 cut(s)	371, 647, 727, 1100
FriOI	GRGCYC	2 cut(s)	608, 935
Fsp4HI	GCNGC	3 cut(s)	279, 708, 990
GlaI	GCGC	2 cut(s)	12, 437
GluI	GCNGC	3 cut(s)	279, 708, 990
HaeII	RGCGCY	1 cut(s)	14
HapII	CCGG	1 cut(s)	290
HhaI	GCGC	2 cut(s)	13, 438
Hin1II	CATG	5 cut(s)	98, 397, 466, 896, 1007
Hin6I	GCGC	2 cut(s)	11, 436
HinP1I	GCGC	2 cut(s)	11, 436
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HindIII	AAGCTT	3 cut(s)	362, 479, 531
HinfI	GANTC	3 cut(s)	337, 554, 811
HpaI	GTTAAC	1 cut(s)	561
HpaII	CCGG	1 cut(s)	290
HphI	GGTGA	4 cut(s)	349, 770, 1046, 1111
Hpy166II	GTNNAC	3 cut(s)	51, 561, 793
Hpy188I	TCNGA	2 cut(s)	183, 1143
Hpy188III	TCNNGA	3 cut(s)	73, 215, 1004
Hpy8I	GTNNAC	3 cut(s)	51, 561, 793
HpyAV	CCTTC	5 cut(s)	39, 95, 364, 938, 1085
HpyCH4III	ACNGT	2 cut(s)	499, 797
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	8 cut(s)	131, 159, 244, 682, 710, 737, 803, 989
HpyF3I	CTNAG	4 cut(s)	140, 164, 182, 282
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	5 cut(s)	98, 397, 466, 896, 1007
HspAI	GCGC	2 cut(s)	11, 436
Ksp22I	TGATCA	3 cut(s)	396, 1000, 1138
KspAI	GTTAAC	1 cut(s)	561
Kzo9I	GATC	5 cut(s)	113, 396, 455, 1000, 1138
LmnI	GCTCC	3 cut(s)	853, 930, 948
LpnPI	CCDG	8 cut(s)	117, 303, 307, 516, 561, 577, 604, 696
Lsp1109I	GCAGC	3 cut(s)	265, 694, 1001
LweI	GCATC	1 cut(s)	790
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	3 cut(s)	493, 898, 911
MalI	GATC	5 cut(s)	115, 398, 457, 1002, 1140
MboI	GATC	5 cut(s)	113, 396, 455, 1000, 1138
MflI	RGATCY	2 cut(s)	113, 455
MhlI	GDGCHC	2 cut(s)	608, 935
MluCI	AATT	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	1056
MseI	TTAA	5 cut(s)	312, 483, 560, 599, 849
MslI	CAYNNNNRTG	1 cut(s)	1065
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	2 cut(s)	133, 991
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	94
NdeII	GATC	5 cut(s)	113, 396, 455, 1000, 1138
NlaIII	CATG	5 cut(s)	98, 397, 466, 896, 1007
NlaIV	GGNNCC	2 cut(s)	620, 777
NmuCI	GTSAC	1 cut(s)	911
PagI	TCATGA	1 cut(s)	1003
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PctI	GAATGC	2 cut(s)	133, 991
PfeI	GAWTC	2 cut(s)	554, 811
PkrI	GCNGC	3 cut(s)	280, 709, 991
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	935
PspEI	GGTNACC	1 cut(s)	898
PspN4I	GGNNCC	2 cut(s)	620, 777
PspPI	GGNCC	2 cut(s)	618, 775
PstI	CTGCAG	1 cut(s)	712
PsuI	RGATCY	2 cut(s)	113, 455
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
RseI	CAYNNNNRTG	1 cut(s)	1065
SacI	GAGCTC	1 cut(s)	935
SaqAI	TTAA	5 cut(s)	312, 483, 560, 599, 849
SatI	GCNGC	3 cut(s)	279, 708, 990
Sau3AI	GATC	5 cut(s)	113, 396, 455, 1000, 1138
Sau96I	GGNCC	2 cut(s)	618, 775
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	608, 935
SfaNI	GCATC	1 cut(s)	790
SfcI	CTRYAG	2 cut(s)	708, 840
SinI	GGWCC	2 cut(s)	618, 775
SmiMI	CAYNNNNRTG	1 cut(s)	1065
SmlI	CTYRAG	2 cut(s)	193, 213
SmoI	CTYRAG	2 cut(s)	193, 213
Sse9I	AATT	1 cut(s)	175
SsiI	CCGC	2 cut(s)	147, 1044
SspI	AATATT	1 cut(s)	940
SstI	GAGCTC	1 cut(s)	935
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	94, 1109
TaaI	ACNGT	2 cut(s)	499, 797
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	2 cut(s)	410, 1014
TasI	AATT	1 cut(s)	175
TfiI	GAWTC	2 cut(s)	554, 811
Tru1I	TTAA	5 cut(s)	312, 483, 560, 599, 849
Tru9I	TTAA	5 cut(s)	312, 483, 560, 599, 849
TscAI	CASTG	3 cut(s)	253, 504, 802
TseFI	GTSAC	1 cut(s)	911
TseI	GCWGC	3 cut(s)	278, 707, 989
Tsp45I	GTSAC	1 cut(s)	911
TspDTI	ATGAA	4 cut(s)	479, 657, 1020, 1104
TspRI	CASTG	3 cut(s)	253, 504, 802
VpaK11BI	GGWCC	2 cut(s)	618, 775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XmiI	GTMKAC	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.