Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0016308

Physical Location & Seq

Genomic Coordinates Forward (+)

12352881 .. 12354849

Gene Structure 1969 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1158000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGAAGAGCACCGTGCTGTGAGAAACTTGGGCTCAAAAGAGGAAAATGGACAGCTGAAGAAGATGAAATCTTGACCAAATACATTCACGCTCATGGAGAAGGTTCTTGGAGATCTTTGCCAAAGAATACGGGATTGCTGAGAAGTGGGAAGAGTTGCAGACTGAGGTGGATAAATTATCTGAGGGCTGACTTAAAGAGAGGGAACTTCACTGCTGAGGAGGAAGAAACCATTGTTAAGCTACACAGGGCTTTGGGTAATAGGTGGTCCTTGATTGCCGCTCATTTACCAGGAAGAACAGACAATGGGATAAAAAACTACTGGAACTCTCATTTGAGTCGAAAAATCTACAGCTTTATCAAGCTGGGAAACGAATATCTACCCACCATTCTCAATGATGTGAAGAAGATAACTTCATGCAATAAGCATCGTAAAGGCACTCGAGCGAGCAGATCTACCATGAACAACAAGAGCAAGAACAAGAACTTGGCCCCGTTTAACTCAAGAAAATCAGAAGCAAACCCTGAACTTGGAAACCCTAGCCTACCAACTGGCACCATTATTAATCTAGGGCAAGTGGGAAATGAGGACATCAATTTAAGGGGTTTGGAGTCTTGGGACCCAATAAAGAATGGAGATGGTGAGGCAATAGGAATGTTGGGGATGCAATATTCTTTTTTGGACGGTGCAGAAATGATTAATTTGGATCCTTGCGGTGAGCAGAAAAAAAGTGCACAATTGTGGCTTGGGAAAAAAGAAAACAATATTACTGGTAGTTCAACTGCAATATATGGAGATAATGACGGTGAAACGGAGGTTTTGGGGACATCTTGTGAATGTGTAGGAACTATGGACCTGAATAATAATATTTTTGAAATTGAAGGGAGAAGAAGTACAAGTATTTGGAGCTCATCAAATGCAGCTGAGAGTGGTGGCGGTGGCGGTGGTGGAGAGTTGTACTCCTTCGCTTCATCAATGAATTCAGGCTTTGATGATGAATGGCTTGATTGGGGTTGGGCAGGTGGTGGCCTTCAATGTCACAATGGTGAATTGGAATGGCGGGATGAAGGGGAGACAATAGCTTGGCTGTGGGAAAATGGCAGTACTGGTGAAGGACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

374

Amino Acids

41.14

Weight (kDa)

6.06

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	5.8e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	4.5e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	1.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 117	2.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19310
malus_domestica	MD13G1158000.v1.1 MD16G1158800.v1.1
prunus_persica	Prupe.1G125300_v2.0.a1
pyrus_communis	pycom13g13510
rosa_chinensis	RchiOBHm_Chr4g0424331
rosa_laevigata	RLG00000007485
rosa_multiflora	Rmu_sc0002260.1_g000004
rosa_roxburghii	Rroxscaffold_5G00366280
rosa_rugosa	Rorug04G0195900
rosa_samantha	Rh4AG252800 Rh4BG258200 Rh4CG269100 Rh4DG252600
rosa_wichuraiana	Rw4G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1010
Acc36I	ACCTGC	1 cut(s)	1010
AccB1I	GGYRCC	1 cut(s)	554
AccBSI	CCGCTC	1 cut(s)	281
AciI	CCGC	5 cut(s)	279, 714, 936, 942, 1060
AclWI	GGATC	2 cut(s)	701, 714
AcsI	RAATTY	1 cut(s)	979
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	895, 959, 1105
AfiI	CCNNNNNNNGG	1 cut(s)	530
AgsI	TTSAA	4 cut(s)	780, 875, 881, 1034
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AleI	CACNNNNGTG	2 cut(s)	739, 1044
AluBI	AGCT	7 cut(s)	56, 241, 354, 364, 909, 923, 1082
AluI	AGCT	7 cut(s)	56, 241, 354, 364, 909, 923, 1082
Alw21I	GWGCWC	3 cut(s)	13, 736, 911
Alw26I	GTCTC	1 cut(s)	1067
Alw44I	GTGCAC	1 cut(s)	732
AlwI	GGATC	2 cut(s)	701, 714
Ama87I	CYCGRG	1 cut(s)	441
AoxI	GGCC	2 cut(s)	489, 1027
ApaLI	GTGCAC	1 cut(s)	732
ApeKI	GCWGC	1 cut(s)	920
ApoI	RAATTY	1 cut(s)	979
AseI	ATTAAT	2 cut(s)	564, 699
AspS9I	GGNCC	4 cut(s)	267, 490, 619, 853
AsuHPI	GGTGA	5 cut(s)	653, 728, 818, 1058, 1121
AvaI	CYCGRG	1 cut(s)	441
AvaII	GGWCC	3 cut(s)	267, 619, 853
BaeGI	GKGCMC	1 cut(s)	736
BamHI	GGATCC	1 cut(s)	706
BanI	GGYRCC	1 cut(s)	554
BanII	GRGCYC	2 cut(s)	36, 911
Bbv12I	GWGCWC	3 cut(s)	13, 736, 911
BbvCI	CCTCAGC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	932
BccI	CCATC	1 cut(s)	632
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	1067
BfaI	CTAG	2 cut(s)	540, 569
BfmI	CTRYAG	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	1010
BglII	AGATCT	2 cut(s)	113, 452
BisI	GCNGC	2 cut(s)	279, 921
BlsI	GCNGC	2 cut(s)	280, 922
BmcAI	AGTACT	1 cut(s)	1105
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	3 cut(s)	267, 619, 853
BmeT110I	CYCGRG	1 cut(s)	441
BmgT120I	GGNCC	4 cut(s)	267, 490, 619, 853
BmiI	GGNNCC	5 cut(s)	492, 556, 620, 621, 708
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	2 cut(s)	436, 654
BplI	GAGNNNNNCTC	2 cut(s)	944, 976
Bpu10I	CCTNAGC	1 cut(s)	216
BpuEI	CTTGAG	1 cut(s)	487
BsaXI	ACNNNNNCTCC	2 cut(s)	877, 907
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse1I	ACTGG	4 cut(s)	326, 556, 775, 1111
BseBI	CCWGG	1 cut(s)	291
BseGI	GGATG	2 cut(s)	669, 1069
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMII	CTCAG	5 cut(s)	131, 155, 173, 207, 915
BseNI	ACTGG	4 cut(s)	326, 556, 775, 1111
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	1 cut(s)	932
BseYI	CCCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	708
BshFI	GGCC	2 cut(s)	491, 1029
BshNI	GGYRCC	1 cut(s)	554
BsiHKAI	GWGCWC	3 cut(s)	13, 736, 911
BsiHKCI	CYCGRG	1 cut(s)	441
BslFI	GGGAC	2 cut(s)	632, 838
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmAI	GTCTC	1 cut(s)	1067
BsmFI	GGGAC	2 cut(s)	632, 838
BsnI	GGCC	2 cut(s)	491, 1029
BsoBI	CYCGRG	1 cut(s)	441
Bsp1286I	GDGCHC	4 cut(s)	13, 36, 736, 911
Bsp143I	GATC	3 cut(s)	113, 452, 706
BspACI	CCGC	5 cut(s)	279, 714, 936, 942, 1060
BspANI	GGCC	2 cut(s)	491, 1029
BspCNI	CTCAG	5 cut(s)	132, 156, 174, 208, 916
BspLI	GGNNCC	5 cut(s)	492, 556, 620, 621, 708
BspMI	ACCTGC	1 cut(s)	1010
BspPI	GGATC	2 cut(s)	701, 714
BspT107I	GGYRCC	1 cut(s)	554
BsrBI	CCGCTC	1 cut(s)	281
BsrI	ACTGG	4 cut(s)	326, 556, 775, 1111
BssMI	GATC	3 cut(s)	113, 452, 706
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	4 cut(s)	15, 686, 806, 1119
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	448
BstDEI	CTNAG	5 cut(s)	140, 164, 182, 216, 924
BstF5I	GGATG	2 cut(s)	669, 1069
BstKTI	GATC	3 cut(s)	116, 455, 709
BstMAI	GTCTC	1 cut(s)	1067
BstMBI	GATC	3 cut(s)	113, 452, 706
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	736
BstV1I	GCAGC	1 cut(s)	932
BstX2I	RGATCY	3 cut(s)	113, 452, 706
BstYI	RGATCY	3 cut(s)	113, 452, 706
BsuRI	GGCC	2 cut(s)	491, 1029
BtsCI	GGATG	2 cut(s)	669, 1069
BtsI	GCAGTG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	210
BveI	ACCTGC	1 cut(s)	1010
Cac8I	GCNNGC	1 cut(s)	448
Cfr13I	GGNCC	4 cut(s)	267, 490, 619, 853
Csp6I	GTAC	3 cut(s)	894, 958, 1104
CviAII	CATG	3 cut(s)	95, 417, 460
CviQI	GTAC	3 cut(s)	894, 958, 1104
DdeI	CTNAG	5 cut(s)	140, 164, 182, 216, 924
DpnI	GATC	3 cut(s)	115, 454, 708
DpnII	GATC	3 cut(s)	113, 452, 706
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	909
Eco24I	GRGCYC	2 cut(s)	36, 911
Eco47I	GGWCC	3 cut(s)	267, 619, 853
Eco53kI	GAGCTC	1 cut(s)	909
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	441
EcoICRI	GAGCTC	1 cut(s)	909
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	979
EcoRII	CCWGG	1 cut(s)	289
EcoT38I	GRGCYC	2 cut(s)	36, 911
FaeI	CATG	3 cut(s)	98, 420, 463
FaiI	YATR	6 cut(s)	96, 418, 461, 790, 792, 851
FaqI	GGGAC	2 cut(s)	632, 838
FatI	CATG	3 cut(s)	94, 416, 459
FauI	CCCGC	1 cut(s)	1053
Fnu4HI	GCNGC	2 cut(s)	279, 921
FokI	GGATG	2 cut(s)	676, 1076
FriOI	GRGCYC	2 cut(s)	36, 911
Fsp4HI	GCNGC	2 cut(s)	279, 921
FspBI	CTAG	2 cut(s)	540, 569
GluI	GCNGC	2 cut(s)	279, 921
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	2 cut(s)	491, 1029
Hin1II	CATG	3 cut(s)	98, 420, 463
HinfI	GANTC	2 cut(s)	337, 611
HphI	GGTGA	5 cut(s)	653, 728, 818, 1058, 1121
Hpy166II	GTNNAC	1 cut(s)	734
Hpy188I	TCNGA	2 cut(s)	183, 514
Hpy188III	TCNNGA	2 cut(s)	73, 504
Hpy8I	GTNNAC	1 cut(s)	734
HpyAV	CCTTC	6 cut(s)	95, 875, 973, 1040, 1061, 1106
HpyCH4III	ACNGT	4 cut(s)	15, 686, 806, 1119
HpyCH4V	TGCA	7 cut(s)	159, 420, 667, 689, 734, 785, 920
HpyF3I	CTNAG	5 cut(s)	140, 164, 182, 216, 924
Hsp92II	CATG	3 cut(s)	98, 420, 463
KflI	GGGWCCC	1 cut(s)	619
Kzo9I	GATC	3 cut(s)	113, 452, 706
LmnI	GCTCC	1 cut(s)	906
Lsp1109I	GCAGC	1 cut(s)	932
LweI	GCATC	2 cut(s)	436, 654
MaeI	CTAG	2 cut(s)	540, 569
MaeIII	GTNAC	1 cut(s)	1037
MalI	GATC	3 cut(s)	115, 454, 708
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	3 cut(s)	113, 452, 706
MboII	GAAGA	9 cut(s)	18, 71, 74, 163, 236, 306, 415, 418, 900
MfeI	CAATTG	1 cut(s)	737
MflI	RGATCY	3 cut(s)	113, 452, 706
MhlI	GDGCHC	4 cut(s)	13, 36, 736, 911
MluCI	AATT	7 cut(s)	175, 595, 700, 737, 876, 979, 1049
MlyI	GAGTC	2 cut(s)	346, 620
MnlI	CCTC	9 cut(s)	35, 159, 177, 194, 211, 214, 580, 637, 808
MseI	TTAA	6 cut(s)	194, 237, 498, 564, 599, 699
MslI	CAYNNNNRTG	3 cut(s)	93, 739, 1044
MspA1I	CMGCKG	2 cut(s)	56, 923
MspR9I	CCNGG	1 cut(s)	291
MunI	CAATTG	1 cut(s)	737
MvaI	CCWGG	1 cut(s)	291
NdeII	GATC	3 cut(s)	113, 452, 706
NlaIII	CATG	3 cut(s)	98, 420, 463
NlaIV	GGNNCC	5 cut(s)	492, 556, 620, 621, 708
NmuCI	GTSAC	1 cut(s)	1037
OliI	CACNNNNGTG	2 cut(s)	739, 1044
PaeR7I	CTCGAG	1 cut(s)	441
PaqCI	CACCTGC	1 cut(s)	1010
PkrI	GCNGC	2 cut(s)	280, 922
PleI	GAGTC	2 cut(s)	345, 619
PpsI	GAGTC	2 cut(s)	345, 619
PpuMI	RGGWCCY	1 cut(s)	619
PshBI	ATTAAT	2 cut(s)	564, 699
Psp124BI	GAGCTC	1 cut(s)	911
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	289
PspFI	CCCAGC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	5 cut(s)	492, 556, 620, 621, 708
PspPI	GGNCC	4 cut(s)	267, 490, 619, 853
PspPPI	RGGWCCY	1 cut(s)	619
PspXI	VCTCGAGB	1 cut(s)	441
PsuI	RGATCY	3 cut(s)	113, 452, 706
PvuII	CAGCTG	2 cut(s)	56, 923
RsaI	GTAC	3 cut(s)	895, 959, 1105
RsaNI	GTAC	3 cut(s)	894, 958, 1104
RseI	CAYNNNNRTG	3 cut(s)	93, 739, 1044
SacI	GAGCTC	1 cut(s)	911
SaqAI	TTAA	6 cut(s)	194, 237, 498, 564, 599, 699
SatI	GCNGC	2 cut(s)	279, 921
Sau3AI	GATC	3 cut(s)	113, 452, 706
Sau96I	GGNCC	4 cut(s)	267, 490, 619, 853
ScaI	AGTACT	1 cut(s)	1105
SchI	GAGTC	2 cut(s)	346, 620
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	4 cut(s)	13, 36, 736, 911
SfaNI	GCATC	2 cut(s)	436, 654
SfcI	CTRYAG	1 cut(s)	349
Sfr274I	CTCGAG	1 cut(s)	441
SinI	GGWCC	3 cut(s)	267, 619, 853
SlaI	CTCGAG	1 cut(s)	441
SmiMI	CAYNNNNRTG	3 cut(s)	93, 739, 1044
SmlI	CTYRAG	2 cut(s)	441, 502
SmoI	CTYRAG	2 cut(s)	441, 502
Sse9I	AATT	7 cut(s)	175, 595, 700, 737, 876, 979, 1049
SsiI	CCGC	5 cut(s)	279, 714, 936, 942, 1060
SspI	AATATT	3 cut(s)	671, 766, 868
SspMI	CTAG	2 cut(s)	540, 569
SstI	GAGCTC	1 cut(s)	911
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	4 cut(s)	15, 686, 806, 1119
TaqI	TCGA	2 cut(s)	340, 442
TasI	AATT	7 cut(s)	175, 595, 700, 737, 876, 979, 1049
TatI	WGTACW	3 cut(s)	893, 957, 1103
TauI	GCSGC	1 cut(s)	281
Tru1I	TTAA	6 cut(s)	194, 237, 498, 564, 599, 699
Tru9I	TTAA	6 cut(s)	194, 237, 498, 564, 599, 699
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	1037
TseI	GCWGC	1 cut(s)	920
Tsp45I	GTSAC	1 cut(s)	1037
TspDTI	ATGAA	7 cut(s)	81, 405, 476, 960, 992, 1011, 1080
TspGWI	ACGGA	1 cut(s)	827
TspRI	CASTG	1 cut(s)	217
VneI	GTGCAC	1 cut(s)	732
VpaK11BI	GGWCC	3 cut(s)	267, 619, 853
VspI	ATTAAT	2 cut(s)	564, 699
XapI	RAATTY	1 cut(s)	979
XhoI	CTCGAG	1 cut(s)	441
XspI	CTAG	2 cut(s)	540, 569
ZrmI	AGTACT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.