Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0016308

Physical Location & Seq

Genomic Coordinates Forward (+)

17416094 .. 17419260

Gene Structure 3167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007485

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGAAGAGCTCCGTGCTGTGAAAAAGTTGGGCTAAAAAGAGGAAGGTGGACAGCCGAAGAAGACGAGATCTTGACAAACTACATTCAACTCCATGGAGAAGGCTCTTGGAGATCTTTGCCCAAGAATGCAGGTTTGCTAAGGTGCGGGAAGAGTTGCAGACTGAGGTGGATAAATTATCTGAGGACTGACTTGAGGAGAGGGAACATCACACAAGAGGAGGAAGAAACCATTGTTAAGTTGCACACTGCTTTGGGTAATAGGTGGGCATTGATTGCTGCACACTTACCCGGAAGAACAGACAATGAGATTAAAAACTACTGGAACTCTCATTTGAGTCGCAAAATTTACACCTTCACCAAGCTTATGAAAAACGAATGTCTCATCCCCACCATGATCAATAATGTTTCGAAGTTAGCTGCTGCGAAATCGAAGCGCAGAGTACGTACAAGCAGATCCGCCATGAAAAGCAAGAACAAGCTCAACAAGAATGTTACAGTACTAGCCCCATTTCCACAAGTTCCAAAGCCAGCTTATAAGAGTGATGTGTTTGAATCATTAACCAGAGAAAACCCAAATCAAGTGCAAACCAGTCATTCAATGGGCTTGGAGTGTTGGGCCCCAAAAGGGAAAGATGAAAAAGAAGAAGTAGAGGAAACAATAAGAATGTTGGGTGGTGTGCAAGGTTCTTGCTTGGATATTACAGCAGGGATGATTAGTTCAACGACTCCTGCAATATATGCTGCTAATAATGGAGAAAAAGAGGCACTGGACCCATATGAATGTGTAGACAGTGATGTAATTGTGGATCATAACCCAAGTGGGAGTACCACTGTTGTAGGGTTTAAGGAGCAGAGAGAAAATGGGGTCGTGGGTTTTACATATGAGCATGAGGTGACCACAAAGAGTCATCAAGGTATTTGGAGCTCAAATATTGAAGGGAGCTGTGGTGAGATGTATGCTTGGTCGTCACCACTGAATGCCGCCTTTGATGATCATGAATTGCTCGATTGTGATTGGGTAGGTGGTGGTGGTGGTGGTCTTCAATGTCATAATGATGAATTGGAGTTATGGGATGAAGGAGAGGTGAGGACACCTTGGTTATGGGAGTGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

373

Amino Acids

41.83

Weight (kDa)

6.11

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	4.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1.7e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	4.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	4.8e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19310
malus_domestica	MD13G1158000.v1.1 MD16G1158800.v1.1
prunus_persica	Prupe.1G125300_v2.0.a1
pyrus_communis	pycom13g13510
rosa_chinensis	RchiOBHm_Chr4g0424331
rosa_laevigata	RLG00000007485
rosa_multiflora	Rmu_sc0002260.1_g000004
rosa_roxburghii	Rroxscaffold_5G00366280
rosa_rugosa	Rorug04G0195900
rosa_samantha	Rh4AG252800 Rh4BG258200 Rh4CG269100 Rh4DG252600
rosa_wichuraiana	Rw4G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	789
AciI	CCGC	3 cut(s)	147, 459, 984
AclWI	GGATC	2 cut(s)	450, 816
AcsI	RAATTY	1 cut(s)	345
AfaI	GTAC	4 cut(s)	444, 448, 501, 829
AfiI	CCNNNNNNNGG	1 cut(s)	627
AgsI	TTSAA	6 cut(s)	89, 554, 600, 723, 938, 1046
AloI	GAACNNNNNNTCC	2 cut(s)	703, 735
AluBI	AGCT	7 cut(s)	11, 364, 419, 481, 533, 927, 945
AluI	AGCT	7 cut(s)	11, 364, 419, 481, 533, 927, 945
Alw21I	GWGCWC	2 cut(s)	13, 929
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	2 cut(s)	450, 816
AoxI	GGCC	1 cut(s)	618
ApaI	GGGCCC	1 cut(s)	622
ApeKI	GCWGC	4 cut(s)	278, 419, 422, 743
ApoI	RAATTY	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	438
AspS9I	GGNCC	3 cut(s)	618, 619, 772
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	5 cut(s)	349, 907, 962, 963, 1099
AsuII	TTCGAA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	772
BaeGI	GKGCMC	1 cut(s)	622
BanII	GRGCYC	3 cut(s)	13, 622, 929
BbsI	GAAGAC	2 cut(s)	69, 1034
Bbv12I	GWGCWC	2 cut(s)	13, 929
BbvI	GCAGC	4 cut(s)	265, 406, 409, 730
BclI	TGATCA	2 cut(s)	396, 994
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	503
BfuAI	ACCTGC	1 cut(s)	122
BglII	AGATCT	2 cut(s)	69, 113
BisI	GCNGC	5 cut(s)	279, 420, 423, 744, 984
BlsI	GCNGC	5 cut(s)	280, 421, 424, 745, 985
BmcAI	AGTACT	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	3 cut(s)	618, 619, 772
BmiI	GGNNCC	3 cut(s)	620, 621, 774
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	2 cut(s)	69, 1034
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	214
BpuMI	CCSGG	1 cut(s)	291
BsaAI	YACGTR	1 cut(s)	446
BsaJI	CCNNGG	2 cut(s)	94, 1097
BsaXI	ACNNNNNCTCC	2 cut(s)	934, 964
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse1I	ACTGG	3 cut(s)	326, 591, 774
BseDI	CCNNGG	2 cut(s)	94, 1097
BseGI	GGATG	3 cut(s)	384, 717, 1081
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMII	CTCAG	2 cut(s)	155, 173
BseNI	ACTGG	3 cut(s)	326, 591, 774
BseRI	GAGGAG	2 cut(s)	211, 233
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	4 cut(s)	265, 406, 409, 730
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	620
BsiHKAI	GWGCWC	2 cut(s)	13, 929
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	627
BsmAI	GTCTC	1 cut(s)	386
BsmI	GAATGC	2 cut(s)	133, 985
BsnI	GGCC	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	410
Bsp120I	GGGCCC	1 cut(s)	618
Bsp1286I	GDGCHC	3 cut(s)	13, 622, 929
Bsp143I	GATC	6 cut(s)	69, 113, 396, 455, 808, 994
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	3 cut(s)	147, 459, 984
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	2 cut(s)	156, 174
BspHI	TCATGA	1 cut(s)	997
BspLI	GGNNCC	3 cut(s)	620, 621, 774
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	2 cut(s)	450, 816
BspT104I	TTCGAA	1 cut(s)	410
BsrI	ACTGG	3 cut(s)	326, 591, 774
BssECI	CCNNGG	2 cut(s)	94, 1097
BssMI	GATC	6 cut(s)	69, 113, 396, 455, 808, 994
BssT1I	CCWWGG	2 cut(s)	94, 1097
Bst4CI	ACNGT	3 cut(s)	499, 794, 835
Bst6I	CTCTTC	1 cut(s)	146
BstAPI	GCANNNNNTGC	2 cut(s)	275, 740
BstBAI	YACGTR	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	3 cut(s)	140, 164, 182
BstDSI	CCRYGG	1 cut(s)	94
BstEII	GGTNACC	1 cut(s)	895
BstF5I	GGATG	3 cut(s)	384, 717, 1081
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	6 cut(s)	72, 116, 399, 458, 811, 997
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	6 cut(s)	69, 113, 396, 455, 808, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 740
BstPI	GGTNACC	1 cut(s)	895
BstSCI	CCNGG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	622
BstSNI	TACGTA	1 cut(s)	446
BstV1I	GCAGC	4 cut(s)	265, 406, 409, 730
BstV2I	GAAGAC	2 cut(s)	69, 1034
BstX2I	RGATCY	3 cut(s)	69, 113, 455
BstYI	RGATCY	3 cut(s)	69, 113, 455
BsuRI	GGCC	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	384, 717, 1081
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	5 cut(s)	246, 767, 799, 831, 974
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	531
CciI	TCATGA	1 cut(s)	997
CfoI	GCGC	1 cut(s)	438
Cfr13I	GGNCC	3 cut(s)	618, 619, 772
Csp6I	GTAC	4 cut(s)	443, 447, 500, 828
CviAII	CATG	5 cut(s)	95, 394, 463, 890, 998
CviQI	GTAC	4 cut(s)	443, 447, 500, 828
DdeI	CTNAG	3 cut(s)	140, 164, 182
DpnI	GATC	6 cut(s)	71, 115, 398, 457, 810, 996
DpnII	GATC	6 cut(s)	69, 113, 396, 455, 808, 994
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	448
Ecl136II	GAGCTC	2 cut(s)	11, 927
Eco105I	TACGTA	1 cut(s)	446
Eco130I	CCWWGG	2 cut(s)	94, 1097
Eco24I	GRGCYC	3 cut(s)	13, 622, 929
Eco47I	GGWCC	1 cut(s)	772
Eco53kI	GAGCTC	2 cut(s)	11, 927
Eco91I	GGTNACC	1 cut(s)	895
EcoICRI	GAGCTC	2 cut(s)	11, 927
EcoO109I	RGGNCCY	1 cut(s)	619
EcoO65I	GGTNACC	1 cut(s)	895
EcoT14I	CCWWGG	2 cut(s)	94, 1097
EcoT38I	GRGCYC	3 cut(s)	13, 622, 929
ErhI	CCWWGG	2 cut(s)	94, 1097
FaeI	CATG	5 cut(s)	98, 397, 466, 893, 1001
FatI	CATG	5 cut(s)	94, 393, 462, 889, 997
FauI	CCCGC	1 cut(s)	140
FauNDI	CATATG	2 cut(s)	778, 883
FbaI	TGATCA	2 cut(s)	396, 994
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	5 cut(s)	279, 420, 423, 744, 984
FokI	GGATG	3 cut(s)	371, 724, 1088
FriOI	GRGCYC	3 cut(s)	13, 622, 929
Fsp4HI	GCNGC	5 cut(s)	279, 420, 423, 744, 984
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	5 cut(s)	279, 420, 423, 744, 984
HaeIII	GGCC	1 cut(s)	620
HapII	CCGG	1 cut(s)	291
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	5 cut(s)	98, 397, 466, 893, 1001
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	4 cut(s)	337, 554, 727, 907
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	5 cut(s)	349, 907, 962, 963, 1099
Hpy166II	GTNNAC	2 cut(s)	51, 790
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	73, 998
Hpy8I	GTNNAC	2 cut(s)	51, 790
HpyAV	CCTTC	5 cut(s)	39, 95, 364, 932, 1073
HpyCH4III	ACNGT	3 cut(s)	499, 794, 835
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	7 cut(s)	131, 159, 244, 281, 586, 682, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 740
HpyF3I	CTNAG	3 cut(s)	140, 164, 182
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	5 cut(s)	98, 397, 466, 893, 1001
HspAI	GCGC	1 cut(s)	436
Ksp22I	TGATCA	2 cut(s)	396, 994
Kzo9I	GATC	6 cut(s)	69, 113, 396, 455, 808, 994
LmnI	GCTCC	4 cut(s)	16, 850, 924, 942
LpnPI	CCDG	9 cut(s)	117, 304, 307, 543, 577, 604, 693, 744, 755
Lsp1109I	GCAGC	4 cut(s)	265, 406, 409, 730
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	3 cut(s)	493, 895, 969
MalI	GATC	6 cut(s)	71, 115, 398, 457, 810, 996
MboI	GATC	6 cut(s)	69, 113, 396, 455, 808, 994
MboII	GAAGA	8 cut(s)	18, 71, 74, 163, 236, 306, 656, 1034
MflI	RGATCY	3 cut(s)	69, 113, 455
MhlI	GDGCHC	3 cut(s)	13, 622, 929
MluCI	AATT	5 cut(s)	175, 345, 801, 1001, 1061
MlyI	GAGTC	3 cut(s)	346, 721, 916
MseI	TTAA	4 cut(s)	237, 312, 560, 846
MslI	CAYNNNNRTG	2 cut(s)	781, 1056
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	2 cut(s)	133, 985
MwoI	GCNNNNNNNGC	2 cut(s)	275, 740
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	94
NdeI	CATATG	2 cut(s)	778, 883
NdeII	GATC	6 cut(s)	69, 113, 396, 455, 808, 994
NlaIII	CATG	5 cut(s)	98, 397, 466, 893, 1001
NlaIV	GGNNCC	3 cut(s)	620, 621, 774
NmuCI	GTSAC	2 cut(s)	895, 969
NspV	TTCGAA	1 cut(s)	410
PagI	TCATGA	1 cut(s)	997
PctI	GAATGC	2 cut(s)	133, 985
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	5 cut(s)	280, 421, 424, 745, 985
PleI	GAGTC	3 cut(s)	345, 721, 915
PpsI	GAGTC	3 cut(s)	345, 721, 915
Ppu21I	YACGTR	1 cut(s)	446
PsiI	TTATAA	1 cut(s)	537
Psp124BI	GAGCTC	2 cut(s)	13, 929
PspEI	GGTNACC	1 cut(s)	895
PspN4I	GGNNCC	3 cut(s)	620, 621, 774
PspOMI	GGGCCC	1 cut(s)	618
PspPI	GGNCC	3 cut(s)	618, 619, 772
PsuI	RGATCY	3 cut(s)	69, 113, 455
RsaI	GTAC	4 cut(s)	444, 448, 501, 829
RsaNI	GTAC	4 cut(s)	443, 447, 500, 828
RseI	CAYNNNNRTG	2 cut(s)	781, 1056
SacI	GAGCTC	2 cut(s)	13, 929
SaqAI	TTAA	4 cut(s)	237, 312, 560, 846
SatI	GCNGC	5 cut(s)	279, 420, 423, 744, 984
Sau3AI	GATC	6 cut(s)	69, 113, 396, 455, 808, 994
Sau96I	GGNCC	3 cut(s)	618, 619, 772
ScaI	AGTACT	1 cut(s)	501
SchI	GAGTC	3 cut(s)	346, 721, 916
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	3 cut(s)	13, 622, 929
SfuI	TTCGAA	1 cut(s)	410
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	2 cut(s)	781, 1056
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
SnaBI	TACGTA	1 cut(s)	446
Sse9I	AATT	5 cut(s)	175, 345, 801, 1001, 1061
SsiI	CCGC	3 cut(s)	147, 459, 984
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	1 cut(s)	503
SstI	GAGCTC	2 cut(s)	13, 929
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	94, 1097
TaaI	ACNGT	3 cut(s)	499, 794, 835
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	3 cut(s)	410, 431, 1008
TasI	AATT	5 cut(s)	175, 345, 801, 1001, 1061
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	986
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	4 cut(s)	237, 312, 560, 846
Tru9I	TTAA	4 cut(s)	237, 312, 560, 846
TscAI	CASTG	5 cut(s)	253, 774, 799, 838, 981
TseFI	GTSAC	2 cut(s)	895, 969
TseI	GCWGC	4 cut(s)	278, 419, 422, 743
Tsp45I	GTSAC	2 cut(s)	895, 969
TspDTI	ATGAA	7 cut(s)	383, 479, 651, 795, 1014, 1074, 1092
TspRI	CASTG	5 cut(s)	253, 774, 799, 838, 981
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	1 cut(s)	345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XmiI	GTMKAC	1 cut(s)	789
XspI	CTAG	1 cut(s)	503
ZrmI	AGTACT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.