Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016308

Physical Location & Seq

Genomic Coordinates Forward (+)

9879635 .. 9882041

Gene Structure 2407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G125300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGGAAGAGCACCATGCTGTGAGAAACTTGGGCTCAAAAGAGGAAGATGGACAGCTGAAGAAGACGAAATCTTGACCAACTACATTCAACTTCATGGAGAAGGCTCTTGGAGATCTTTACCCAATAATGCAGGATTGCTGAGGTGTGGGAAAAGTTGCAGACTGAGGTGGATAAATTATCTGAGGGCTGACTTGAAGAGAGGGAACATCACTGCTGAGGAGGAAGAAACCATTGTTAAGTTACACACTGCTTTGGGTAATAGGTGGTCATTCATAGCCGCTCATTTACCAGGAAGAACAGACAACGAGATAAAGAACTACTGGAACTCTCATTTGAGTAGAAAAATTTACACCTTTACCAATCTGGGAAACGATTATCTGCCCACCATTACGAATGTTGGGAAGAAGACAGCTGCTTCATTCAAGGACCGTAGAGCTGCTGCTCGAGCAAACAGATCATCTATCATGAACAAGAACAAGAATGTATTGGCCCCATCTCCCCAGAGATCACAAGCAAAGCCTCAGCAGAGTGGTACCAATATTGCTGATCATGTAGTGCTTCAACTTGAGCCATCAGCCAGGGAAAACCAGAAAGGAGATGAGGCAATAAGAATGTTGGGTTTGAAAGGTTCTTGTTTGGACAGTACAGAAAGGATTAATTTGGACCATTGTGGTGATCAGAAAGAGGGTGCAGAATTATGCCTTGGGAATAAAGTAAACATTACTAGTTCAACTGTTTTAAGTGGAGATAATAATGGAGAAAAGGAGGTCTTGGGTCTATGTGAATGTGTAGAAAGTGAAATTAGGGGGCTTGAGAGTGGGGTTGTGGATCCAAGTGGGAATGTTGGATTTAAGGAGCAGAGGGAAGATGGGATCATCATGGAGGGTAGTATTACAGATGAAGTGACCAAGAGTGAGGGTAGGAAGAGTACAAGTCTCTGGAGCTCAAATGCAGAAAGTGGCAGTGGAGAGTTGTACTCTTTCTCATCATCAATGAATTCAACCTTTGATGATGAATGGCTCAGTTGGGGTTGGGCAGGTGGCTTTGAGTGTCACAATGAATTGGAATTATGGGATGAAGGGGAGAGGATAGCTTGGTTATGGGAAAGTGGAAGTACTGGTGAAGGACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

378

Amino Acids

41.77

Weight (kDa)

5.55

Isoelectric Point (pI)

48.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19310
malus_domestica	MD13G1158000.v1.1 MD16G1158800.v1.1
prunus_persica	Prupe.1G125300_v2.0.a1
pyrus_communis	pycom13g13510
rosa_chinensis	RchiOBHm_Chr4g0424331
rosa_laevigata	RLG00000007485
rosa_multiflora	Rmu_sc0002260.1_g000004
rosa_roxburghii	Rroxscaffold_5G00366280
rosa_rugosa	Rorug04G0195900
rosa_samantha	Rh4AG252800 Rh4BG258200 Rh4CG269100 Rh4DG252600
rosa_wichuraiana	Rw4G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1028
Acc36I	ACCTGC	1 cut(s)	1028
Acc65I	GGTACC	1 cut(s)	533
AccB1I	GGYRCC	1 cut(s)	533
AccBSI	CCGCTC	1 cut(s)	281
AciI	CCGC	1 cut(s)	279
AclWI	GGATC	3 cut(s)	824, 837, 881
AcsI	RAATTY	2 cut(s)	345, 997
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	5 cut(s)	535, 646, 931, 977, 1117
AgsI	TTSAA	7 cut(s)	89, 196, 424, 563, 625, 732, 1002
AhlI	ACTAGT	1 cut(s)	725
AjnI	CCWGG	2 cut(s)	289, 578
AjuI	GAANNNNNNNTTGG	2 cut(s)	687, 719
AluBI	AGCT	5 cut(s)	56, 413, 437, 945, 1094
AluI	AGCT	5 cut(s)	56, 413, 437, 945, 1094
Alw21I	GWGCWC	2 cut(s)	13, 947
Alw26I	GTCTC	1 cut(s)	941
AlwI	GGATC	3 cut(s)	824, 837, 881
Ama87I	CYCGRG	1 cut(s)	444
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	3 cut(s)	413, 437, 440
ApoI	RAATTY	2 cut(s)	345, 997
AseI	ATTAAT	1 cut(s)	657
Asp718I	GGTACC	1 cut(s)	533
AspS9I	GGNCC	3 cut(s)	427, 490, 664
AsuHPI	GGTGA	2 cut(s)	686, 1133
AvaI	CYCGRG	1 cut(s)	444
AvaII	GGWCC	2 cut(s)	427, 664
BamHI	GGATCC	1 cut(s)	829
BanI	GGYRCC	1 cut(s)	533
BanII	GRGCYC	2 cut(s)	36, 947
BbsI	GAAGAC	2 cut(s)	69, 413
Bbv12I	GWGCWC	2 cut(s)	13, 947
BbvCI	CCTCAGC	3 cut(s)	140, 216, 522
BbvI	GCAGC	3 cut(s)	400, 424, 427
BccI	CCATC	4 cut(s)	42, 502, 580, 863
BciT130I	CCWGG	2 cut(s)	291, 580
BclI	TGATCA	2 cut(s)	547, 676
BcoDI	GTCTC	1 cut(s)	941
BcuI	ACTAGT	1 cut(s)	725
BfaI	CTAG	1 cut(s)	726
BfuAI	ACCTGC	1 cut(s)	1028
BglII	AGATCT	1 cut(s)	113
BisI	GCNGC	4 cut(s)	279, 414, 438, 441
BlsI	GCNGC	4 cut(s)	280, 415, 439, 442
BmcAI	AGTACT	1 cut(s)	1117
Bme1390I	CCNGG	2 cut(s)	291, 580
Bme18I	GGWCC	2 cut(s)	427, 664
BmeT110I	CYCGRG	1 cut(s)	444
BmgT120I	GGNCC	3 cut(s)	427, 490, 664
BmiI	GGNNCC	3 cut(s)	492, 535, 831
BmrFI	CCNGG	2 cut(s)	291, 580
BpiI	GAAGAC	2 cut(s)	69, 413
BplI	GAGNNNNNCTC	2 cut(s)	962, 994
BpmI	CTGGAG	1 cut(s)	961
Bpu10I	CCTNAGC	3 cut(s)	140, 216, 522
BpuEI	CTTGAG	2 cut(s)	587, 833
BsaJI	CCNNGG	2 cut(s)	579, 703
Bse1I	ACTGG	2 cut(s)	326, 1123
BseBI	CCWGG	2 cut(s)	291, 580
BseDI	CCNNGG	2 cut(s)	579, 703
BseGI	GGATG	1 cut(s)	1081
BseMII	CTCAG	6 cut(s)	131, 155, 173, 207, 536, 1036
BseNI	ACTGG	2 cut(s)	326, 1123
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	3 cut(s)	400, 424, 427
BsgI	GTGCAG	1 cut(s)	711
BshFI	GGCC	1 cut(s)	491
BshNI	GGYRCC	1 cut(s)	533
BsiHKAI	GWGCWC	2 cut(s)	13, 947
BsiHKCI	CYCGRG	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	941
BsnI	GGCC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	444
Bsp1286I	GDGCHC	3 cut(s)	13, 36, 947
Bsp143I	GATC	7 cut(s)	113, 455, 506, 547, 676, 829, 873
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	6 cut(s)	132, 156, 174, 208, 535, 1035
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	3 cut(s)	492, 535, 831
BspMI	ACCTGC	1 cut(s)	1028
BspPI	GGATC	3 cut(s)	824, 837, 881
BspT107I	GGYRCC	1 cut(s)	533
BsrBI	CCGCTC	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	326, 1123
BssECI	CCNNGG	2 cut(s)	579, 703
BssMI	GATC	7 cut(s)	113, 455, 506, 547, 676, 829, 873
BssT1I	CCWWGG	1 cut(s)	703
Bst2UI	CCWGG	2 cut(s)	291, 580
Bst4CI	ACNGT	3 cut(s)	431, 644, 736
Bst6I	CTCTTC	2 cut(s)	191, 920
BstDEI	CTNAG	6 cut(s)	140, 164, 182, 216, 522, 1022
BstF5I	GGATG	1 cut(s)	1081
BstKTI	GATC	7 cut(s)	116, 458, 509, 550, 679, 832, 876
BstMAI	GTCTC	1 cut(s)	941
BstMBI	GATC	7 cut(s)	113, 455, 506, 547, 676, 829, 873
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	2 cut(s)	291, 580
BstSCI	CCNGG	2 cut(s)	289, 578
BstV1I	GCAGC	3 cut(s)	400, 424, 427
BstV2I	GAAGAC	2 cut(s)	69, 413
BstX2I	RGATCY	2 cut(s)	113, 829
BstYI	RGATCY	2 cut(s)	113, 829
BsuRI	GGCC	1 cut(s)	491
BtsCI	GGATG	1 cut(s)	1081
BtsI	GCAGTG	3 cut(s)	210, 246, 970
BtsIMutI	CAGTG	3 cut(s)	210, 246, 970
BveI	ACCTGC	1 cut(s)	1028
CciI	TCATGA	1 cut(s)	465
Cfr13I	GGNCC	3 cut(s)	427, 490, 664
Csp6I	GTAC	5 cut(s)	534, 645, 930, 976, 1116
CviAII	CATG	5 cut(s)	15, 95, 466, 551, 880
CviQI	GTAC	5 cut(s)	534, 645, 930, 976, 1116
DdeI	CTNAG	6 cut(s)	140, 164, 182, 216, 522, 1022
DpnI	GATC	7 cut(s)	115, 457, 508, 549, 678, 831, 875
DpnII	GATC	7 cut(s)	113, 455, 506, 547, 676, 829, 873
Eam1104I	CTCTTC	2 cut(s)	191, 920
EarI	CTCTTC	2 cut(s)	191, 920
Ecl136II	GAGCTC	1 cut(s)	945
Eco130I	CCWWGG	1 cut(s)	703
Eco24I	GRGCYC	2 cut(s)	36, 947
Eco47I	GGWCC	2 cut(s)	427, 664
Eco53kI	GAGCTC	1 cut(s)	945
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	444
EcoICRI	GAGCTC	1 cut(s)	945
EcoRI	GAATTC	1 cut(s)	997
EcoRII	CCWGG	2 cut(s)	289, 578
EcoT14I	CCWWGG	1 cut(s)	703
EcoT38I	GRGCYC	2 cut(s)	36, 947
ErhI	CCWWGG	1 cut(s)	703
FaeI	CATG	5 cut(s)	18, 98, 469, 554, 883
FalI	AAGNNNNNCTT	2 cut(s)	755, 787
FatI	CATG	5 cut(s)	14, 94, 465, 550, 879
FbaI	TGATCA	2 cut(s)	547, 676
Fnu4HI	GCNGC	4 cut(s)	279, 414, 438, 441
FokI	GGATG	1 cut(s)	1088
FriOI	GRGCYC	2 cut(s)	36, 947
Fsp4HI	GCNGC	4 cut(s)	279, 414, 438, 441
FspBI	CTAG	1 cut(s)	726
GluI	GCNGC	4 cut(s)	279, 414, 438, 441
GsuI	CTGGAG	1 cut(s)	961
HaeIII	GGCC	1 cut(s)	491
Hin1II	CATG	5 cut(s)	18, 98, 469, 554, 883
HphI	GGTGA	2 cut(s)	686, 1133
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	2 cut(s)	183, 681
Hpy188III	TCNNGA	3 cut(s)	73, 466, 940
Hpy8I	GTNNAC	1 cut(s)	718
HpyAV	CCTTC	3 cut(s)	95, 1073, 1118
HpyCH4III	ACNGT	3 cut(s)	431, 644, 736
HpyCH4V	TGCA	4 cut(s)	131, 159, 692, 953
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	6 cut(s)	140, 164, 182, 216, 522, 1022
Hsp92II	CATG	5 cut(s)	18, 98, 469, 554, 883
KpnI	GGTACC	1 cut(s)	537
Ksp22I	TGATCA	2 cut(s)	547, 676
Kzo9I	GATC	7 cut(s)	113, 455, 506, 547, 676, 829, 873
LmnI	GCTCC	2 cut(s)	856, 942
Lsp1109I	GCAGC	3 cut(s)	400, 424, 427
MaeI	CTAG	1 cut(s)	726
MaeIII	GTNAC	3 cut(s)	240, 904, 1052
MalI	GATC	7 cut(s)	115, 457, 508, 549, 678, 831, 875
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	7 cut(s)	113, 455, 506, 547, 676, 829, 873
MflI	RGATCY	2 cut(s)	113, 829
MhlI	GDGCHC	3 cut(s)	13, 36, 947
MluCI	AATT	8 cut(s)	175, 345, 658, 695, 801, 997, 1061, 1067
MmeI	TCCRAC	1 cut(s)	826
MseI	TTAA	4 cut(s)	237, 657, 740, 852
MslI	CAYNNNNRTG	1 cut(s)	672
MspA1I	CMGCKG	2 cut(s)	56, 413
MspR9I	CCNGG	2 cut(s)	291, 580
MvaI	CCWGG	2 cut(s)	291, 580
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeII	GATC	7 cut(s)	113, 455, 506, 547, 676, 829, 873
NlaIII	CATG	5 cut(s)	18, 98, 469, 554, 883
NlaIV	GGNNCC	3 cut(s)	492, 535, 831
NmuCI	GTSAC	2 cut(s)	904, 1052
PaeR7I	CTCGAG	1 cut(s)	444
PagI	TCATGA	1 cut(s)	465
PaqCI	CACCTGC	1 cut(s)	1028
PkrI	GCNGC	4 cut(s)	280, 415, 439, 442
PshBI	ATTAAT	1 cut(s)	657
Psp124BI	GAGCTC	1 cut(s)	947
Psp6I	CCWGG	2 cut(s)	289, 578
PspGI	CCWGG	2 cut(s)	289, 578
PspN4I	GGNNCC	3 cut(s)	492, 535, 831
PspPI	GGNCC	3 cut(s)	427, 490, 664
PspXI	VCTCGAGB	1 cut(s)	444
PsuI	RGATCY	2 cut(s)	113, 829
PvuII	CAGCTG	2 cut(s)	56, 413
RsaI	GTAC	5 cut(s)	535, 646, 931, 977, 1117
RsaNI	GTAC	5 cut(s)	534, 645, 930, 976, 1116
RseI	CAYNNNNRTG	1 cut(s)	672
SacI	GAGCTC	1 cut(s)	947
SaqAI	TTAA	4 cut(s)	237, 657, 740, 852
SatI	GCNGC	4 cut(s)	279, 414, 438, 441
Sau3AI	GATC	7 cut(s)	113, 455, 506, 547, 676, 829, 873
Sau96I	GGNCC	3 cut(s)	427, 490, 664
ScaI	AGTACT	1 cut(s)	1117
ScrFI	CCNGG	2 cut(s)	291, 580
SduI	GDGCHC	3 cut(s)	13, 36, 947
Sfr274I	CTCGAG	1 cut(s)	444
SinI	GGWCC	2 cut(s)	427, 664
SlaI	CTCGAG	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	672
SmlI	CTYRAG	3 cut(s)	444, 566, 812
SmoI	CTYRAG	3 cut(s)	444, 566, 812
SpeI	ACTAGT	1 cut(s)	725
Sse9I	AATT	8 cut(s)	175, 345, 658, 695, 801, 997, 1061, 1067
SsiI	CCGC	1 cut(s)	279
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	1 cut(s)	726
SstI	GAGCTC	1 cut(s)	947
StyD4I	CCNGG	2 cut(s)	289, 578
StyI	CCWWGG	1 cut(s)	703
TaaI	ACNGT	3 cut(s)	431, 644, 736
TaqI	TCGA	1 cut(s)	445
TasI	AATT	8 cut(s)	175, 345, 658, 695, 801, 997, 1061, 1067
TatI	WGTACW	4 cut(s)	644, 929, 975, 1115
TauI	GCSGC	1 cut(s)	281
Tru1I	TTAA	4 cut(s)	237, 657, 740, 852
Tru9I	TTAA	4 cut(s)	237, 657, 740, 852
TscAI	CASTG	3 cut(s)	217, 253, 970
TseFI	GTSAC	2 cut(s)	904, 1052
TseI	GCWGC	3 cut(s)	413, 437, 440
Tsp45I	GTSAC	2 cut(s)	904, 1052
TspDTI	ATGAA	9 cut(s)	83, 262, 408, 482, 915, 1010, 1029, 1074, 1092
TspRI	CASTG	3 cut(s)	217, 253, 970
VpaK11BI	GGWCC	2 cut(s)	427, 664
VspI	ATTAAT	1 cut(s)	657
XapI	RAATTY	2 cut(s)	345, 997
XhoI	CTCGAG	1 cut(s)	444
XspI	CTAG	1 cut(s)	726
ZrmI	AGTACT	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.