Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0016308

Physical Location & Seq

Genomic Coordinates Reverse (-)

46775174 .. 46778488

Gene Structure 3315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG252600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGAAAAACGAATGTCTCATCCCCACCATGATCAATAATGTTTCGAAGTTAGCTGCTGCGAAATCGAAGCGCAGAGTACGTACAAGCAGATCCGCCATGAAAAGCAAGAATAAGCTCAACAAGAACGGTACAGTACTAGCCCCATTTCCACAAGTTCCAAAGCCAGCTTATAAGAGTGATGTGTTTGAATCATTAACCAGAGAAAACCCAAATCAAGTGCAAACCAGTCATTCAATGGGCTTGGAGTGTTGGGCCCCAAAAGAGAGAGATGAAAAAGAGGAAGAGGAGAAGACAATAAGAACGTTGGGTGGTATGCAAGGTTCTTGCTTGGATATTACAGCAGGGATGATTAGTTCAACTACTCCTGTTATATATGCTGCTAATAATGGAGAAAAAGAGGCATTGGACCCATATGAATGTGTAGACAGTGATGTAATTGTGGATCATAACCCAAGTGGGAGTACCAATGTTGTGAGAGAAAATGGGGTCATGGGTTTTACAGATGACCATGAGGTGACCATAAAGAGTCATCAAGGTATTTGGAGCTCAAATATTGAAGGGAGCTGTGGTGAGATGTATGCTTTCTCGTCACCACTGAATGCCGCCTTTGATGATCATGAATGGCTCGATTGTGATTGGTTTGGTGGTGGTGGTGGTGGTGGTGGTCTTCAATGTCATAATGATGAATTGGAGTTATGGGGTGAACGAGAGGTGAGGATACCTTGGTTATGGGAGAGTGGCAATGACGTCGGTGATCAAAGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

255

Amino Acids

28.14

Weight (kDa)

4.9

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19310
malus_domestica	MD13G1158000.v1.1 MD16G1158800.v1.1
prunus_persica	Prupe.1G125300_v2.0.a1
pyrus_communis	pycom13g13510
rosa_chinensis	RchiOBHm_Chr4g0424331
rosa_laevigata	RLG00000007485
rosa_multiflora	Rmu_sc0002260.1_g000004
rosa_roxburghii	Rroxscaffold_5G00366280
rosa_rugosa	Rorug04G0195900
rosa_samantha	Rh4AG252800 Rh4BG258200 Rh4CG269100 Rh4DG252600
rosa_wichuraiana	Rw4G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	171
AatII	GACGTC	1 cut(s)	750
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	2 cut(s)	93, 603
AclI	AACGTT	1 cut(s)	302
AclWI	GGATC	2 cut(s)	84, 450
AcyI	GRCGYC	1 cut(s)	747
AfaI	GTAC	5 cut(s)	78, 82, 130, 135, 463
AgsI	TTSAA	5 cut(s)	188, 234, 357, 557, 671
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	5 cut(s)	53, 115, 167, 546, 564
AluI	AGCT	5 cut(s)	53, 115, 167, 546, 564
Alw21I	GWGCWC	1 cut(s)	548
Alw26I	GTCTC	2 cut(s)	20, 756
AlwI	GGATC	2 cut(s)	84, 450
AoxI	GGCC	1 cut(s)	252
ApaI	GGGCCC	1 cut(s)	256
ApeKI	GCWGC	3 cut(s)	53, 56, 377
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	3 cut(s)	252, 253, 406
AsuHPI	GGTGA	6 cut(s)	526, 581, 582, 713, 724, 764
AsuII	TTCGAA	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	256
BaeI	ACNNNNGTAYC	2 cut(s)	710, 743
BanII	GRGCYC	2 cut(s)	256, 548
BbsI	GAAGAC	2 cut(s)	296, 659
Bbv12I	GWGCWC	1 cut(s)	548
BbvI	GCAGC	3 cut(s)	40, 43, 364
BcgI	CGANNNNNNTGC	2 cut(s)	730, 764
BciVI	GTATCC	1 cut(s)	711
BclI	TGATCA	3 cut(s)	30, 613, 754
BcoDI	GTCTC	2 cut(s)	20, 756
BfaI	CTAG	1 cut(s)	137
BfuI	GTATCC	1 cut(s)	711
BisI	GCNGC	4 cut(s)	54, 57, 378, 603
BlsI	GCNGC	4 cut(s)	55, 58, 379, 604
BmcAI	AGTACT	1 cut(s)	135
Bme18I	GGWCC	1 cut(s)	406
BmgT120I	GGNCC	3 cut(s)	252, 253, 406
BmiI	GGNNCC	3 cut(s)	254, 255, 408
BpiI	GAAGAC	2 cut(s)	296, 659
Bpu14I	TTCGAA	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	747
BsaJI	CCNNGG	1 cut(s)	722
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bse1I	ACTGG	1 cut(s)	225
Bse3DI	GCAATG	1 cut(s)	748
BseDI	CCNNGG	1 cut(s)	722
BseGI	GGATG	2 cut(s)	18, 351
BseMI	GCAATG	1 cut(s)	748
BseNI	ACTGG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	299
BseSI	GKGCMC	1 cut(s)	256
BseXI	GCAGC	3 cut(s)	40, 43, 364
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	548
BsmAI	GTCTC	2 cut(s)	20, 756
BsmI	GAATGC	1 cut(s)	604
BsnI	GGCC	1 cut(s)	254
Bsp119I	TTCGAA	1 cut(s)	44
Bsp120I	GGGCCC	1 cut(s)	252
Bsp1286I	GDGCHC	2 cut(s)	256, 548
Bsp143I	GATC	5 cut(s)	30, 89, 442, 613, 754
BspACI	CCGC	2 cut(s)	93, 603
BspANI	GGCC	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	616
BspLI	GGNNCC	3 cut(s)	254, 255, 408
BspPI	GGATC	2 cut(s)	84, 450
BspT104I	TTCGAA	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	748
BsrI	ACTGG	1 cut(s)	225
BssECI	CCNNGG	1 cut(s)	722
BssMI	GATC	5 cut(s)	30, 89, 442, 613, 754
BssNI	GRCGYC	1 cut(s)	747
BssT1I	CCWWGG	1 cut(s)	722
Bst4CI	ACNGT	3 cut(s)	128, 133, 428
Bst6I	CTCTTC	1 cut(s)	276
BstACI	GRCGYC	1 cut(s)	747
BstBAI	YACGTR	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	165
BstEII	GGTNACC	1 cut(s)	514
BstF5I	GGATG	2 cut(s)	18, 351
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	5 cut(s)	33, 92, 445, 616, 757
BstMAI	GTCTC	2 cut(s)	20, 756
BstMBI	GATC	5 cut(s)	30, 89, 442, 613, 754
BstPI	GGTNACC	1 cut(s)	514
BstSLI	GKGCMC	1 cut(s)	256
BstSNI	TACGTA	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	40, 43, 364
BstV2I	GAAGAC	2 cut(s)	296, 659
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuI	GTATCC	1 cut(s)	711
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	18, 351
BtsIMutI	CAGTG	2 cut(s)	433, 593
Cac8I	GCNNGC	1 cut(s)	165
CciI	TCATGA	1 cut(s)	616
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	3 cut(s)	252, 253, 406
Csp6I	GTAC	5 cut(s)	77, 81, 129, 134, 462
CviAII	CATG	5 cut(s)	28, 97, 490, 509, 617
CviQI	GTAC	5 cut(s)	77, 81, 129, 134, 462
DpnI	GATC	5 cut(s)	32, 91, 444, 615, 756
DpnII	GATC	5 cut(s)	30, 89, 442, 613, 754
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	82
Ecl136II	GAGCTC	1 cut(s)	546
Eco105I	TACGTA	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	722
Eco24I	GRGCYC	2 cut(s)	256, 548
Eco47I	GGWCC	1 cut(s)	406
Eco53kI	GAGCTC	1 cut(s)	546
Eco91I	GGTNACC	1 cut(s)	514
EcoICRI	GAGCTC	1 cut(s)	546
EcoO109I	RGGNCCY	1 cut(s)	253
EcoO65I	GGTNACC	1 cut(s)	514
EcoT14I	CCWWGG	1 cut(s)	722
EcoT38I	GRGCYC	2 cut(s)	256, 548
ErhI	CCWWGG	1 cut(s)	722
FaeI	CATG	5 cut(s)	31, 100, 493, 512, 620
FatI	CATG	5 cut(s)	27, 96, 489, 508, 616
FauNDI	CATATG	1 cut(s)	412
FbaI	TGATCA	3 cut(s)	30, 613, 754
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	4 cut(s)	54, 57, 378, 603
FokI	GGATG	2 cut(s)	5, 358
FriOI	GRGCYC	2 cut(s)	256, 548
Fsp4HI	GCNGC	4 cut(s)	54, 57, 378, 603
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	4 cut(s)	54, 57, 378, 603
HaeIII	GGCC	1 cut(s)	254
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	747
Hin1II	CATG	5 cut(s)	31, 100, 493, 512, 620
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HinfI	GANTC	2 cut(s)	188, 526
HphI	GGTGA	6 cut(s)	526, 581, 582, 713, 724, 764
Hpy166II	GTNNAC	2 cut(s)	424, 704
Hpy188III	TCNNGA	1 cut(s)	617
Hpy8I	GTNNAC	2 cut(s)	424, 704
Hpy99I	CGWCG	1 cut(s)	752
HpyAV	CCTTC	1 cut(s)	551
HpyCH4III	ACNGT	3 cut(s)	128, 133, 428
HpyCH4IV	ACGT	3 cut(s)	79, 302, 747
HpyCH4V	TGCA	2 cut(s)	220, 316
HpySE526I	ACGT	3 cut(s)	79, 302, 747
Hsp92I	GRCGYC	1 cut(s)	747
Hsp92II	CATG	5 cut(s)	31, 100, 493, 512, 620
HspAI	GCGC	1 cut(s)	70
Ksp22I	TGATCA	3 cut(s)	30, 613, 754
Kzo9I	GATC	5 cut(s)	30, 89, 442, 613, 754
LmnI	GCTCC	2 cut(s)	543, 561
LpnPI	CCDG	5 cut(s)	177, 211, 238, 327, 378
Lsp1109I	GCAGC	3 cut(s)	40, 43, 364
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	3 cut(s)	79, 302, 747
MaeIII	GTNAC	2 cut(s)	514, 588
MalI	GATC	5 cut(s)	32, 91, 444, 615, 756
MboI	GATC	5 cut(s)	30, 89, 442, 613, 754
MboII	GAAGA	3 cut(s)	293, 301, 659
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	2 cut(s)	256, 548
MluCI	AATT	2 cut(s)	435, 686
MlyI	GAGTC	1 cut(s)	535
MnlI	CCTC	6 cut(s)	271, 277, 391, 505, 703, 708
MseI	TTAA	1 cut(s)	194
MslI	CAYNNNNRTG	2 cut(s)	415, 681
Mva1269I	GAATGC	1 cut(s)	604
NdeI	CATATG	1 cut(s)	412
NdeII	GATC	5 cut(s)	30, 89, 442, 613, 754
NlaIII	CATG	5 cut(s)	31, 100, 493, 512, 620
NlaIV	GGNNCC	3 cut(s)	254, 255, 408
NmuCI	GTSAC	2 cut(s)	514, 588
NspV	TTCGAA	1 cut(s)	44
PagI	TCATGA	1 cut(s)	616
PctI	GAATGC	1 cut(s)	604
PfeI	GAWTC	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	55, 58, 379, 604
PleI	GAGTC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	534
Ppu21I	YACGTR	1 cut(s)	80
PsiI	TTATAA	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	548
Psp1406I	AACGTT	1 cut(s)	302
PspEI	GGTNACC	1 cut(s)	514
PspN4I	GGNNCC	3 cut(s)	254, 255, 408
PspOMI	GGGCCC	1 cut(s)	252
PspPI	GGNCC	3 cut(s)	252, 253, 406
PsrI	GAACNNNNNNTAC	2 cut(s)	304, 336
PsuI	RGATCY	1 cut(s)	89
RsaI	GTAC	5 cut(s)	78, 82, 130, 135, 463
RsaNI	GTAC	5 cut(s)	77, 81, 129, 134, 462
RseI	CAYNNNNRTG	2 cut(s)	415, 681
SacI	GAGCTC	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	4 cut(s)	54, 57, 378, 603
Sau3AI	GATC	5 cut(s)	30, 89, 442, 613, 754
Sau96I	GGNCC	3 cut(s)	252, 253, 406
ScaI	AGTACT	1 cut(s)	135
SchI	GAGTC	1 cut(s)	535
SduI	GDGCHC	2 cut(s)	256, 548
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	1 cut(s)	406
SmiMI	CAYNNNNRTG	2 cut(s)	415, 681
SnaBI	TACGTA	1 cut(s)	80
Sse9I	AATT	2 cut(s)	435, 686
SsiI	CCGC	2 cut(s)	93, 603
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	548
StyI	CCWWGG	1 cut(s)	722
TaaI	ACNGT	3 cut(s)	128, 133, 428
TaiI	ACGT	3 cut(s)	82, 305, 750
TaqI	TCGA	3 cut(s)	44, 65, 627
TasI	AATT	2 cut(s)	435, 686
TatI	WGTACW	1 cut(s)	133
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	1 cut(s)	188
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	2 cut(s)	433, 600
TseFI	GTSAC	2 cut(s)	514, 588
TseI	GCWGC	3 cut(s)	53, 56, 377
Tsp45I	GTSAC	2 cut(s)	514, 588
TspDTI	ATGAA	6 cut(s)	17, 113, 285, 429, 633, 699
TspRI	CASTG	2 cut(s)	433, 600
VpaK11BI	GGWCC	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	1 cut(s)	137
ZraI	GACGTC	1 cut(s)	748
ZrmI	AGTACT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.