RchiOBHm_Chr4g0424331
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
49913014 .. 49915795
2782 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39360

Sequence Viewer

Length: 1140 bp
ATGGGAAGAGCGCCGTGCTGTGAAAAAGTTGGGCTAAAAAGAGGAAGGTGGACAGCCGAAGAAGACGAGATCTTGACAAACTACATTCAACTCCATGGAGAAGGCTCTTGGAGATCTTTGCCCAAGAATGCAGGTTTGCTAAGGTGCGGGAAGAGTTGCAGACTGAGGTGGATAAATTATCTGAGGACTGACTTGAGGAGAGGGAACATCACACAAGAGGAGGAAGAAACCATTGTTAAGTTGCACACTGCTTTGGGTAATAGGTGGTCATTGATTGCTGCACACTTACCTGGAAGAACAGACAATGAGATTAAAAACTACTGGAACTCTCATTTGAGTCGCAAAATTTACACCTTCACCAAGCTTATGAAAAACGAATGTCTCATCCCCACCATGATCAATAATGTTTCGAAGTTAGCTGCTGCGAAATCGAAGCGCAGAGTACGTACAAGCAGATCCGCCATGAAAAGCAAGAATAAGCTCAACAAGAATGGTACAGTACTAGCCCCATTTCCACAAGTTCCAAAGCCAGCTTATAAGACTGATGTGTTTGAATCATTAACCAGAGAAAACCCAAATCAAGTGCAAACCAGTCATTCAATGGGCTTGGAGTGTTGGGCCCCAAAAGAGAGAGATGAAAAAGAGGAAGAGGAGAAGACAATAAGAACGTTGGGTGGTGTGCAAGGTTCTTGCTTGGATATTACAGCAGGGATGATTAGTTCAACTACTCCTGCTATATATGCTGCTAATAATGGAGAAAAAGAGGCATTGGACCCATATGAATGTGTAGACAGTGATGTAATTGTGGATCATAACCCAAGTGGGAGTACCACTGTTGTGGGGTTTAAGCAGCAGAGAGAAAATGGGGTCATGGGTTTTACAGATGACCATGAGGTGACCATAAAGAGTCATCAAGGTATTTGGAGCTCAAATATTGAAGGGAGCTGTGGTGAGATGTATGCTTTCTCGTCACCACTGAATGCCGCCTTTGATGATCATGAATGGCTCGATTGTGATTGGTTTGGTGGTGGTGGTGGTCTTCAATGTCATGATGATGAATTGGAGTTATGGGGTGAACGAGAGGTGAGGATACCTTGGTTATGGGAGAGTGGCAATGACGTCGGTGATCAAAGAGACTAA

Protein Analysis

379

Amino Acids

42.71

Weight (kDa)

5.99

Isoelectric Point (pI)

52.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 4.3e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 77 1.7e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 3e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 117 1.5e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016308)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g19310
malus_domestica MD13G1158000.v1.1 MD16G1158800.v1.1
prunus_persica Prupe.1G125300_v2.0.a1
pyrus_communis pycom13g13510
rosa_chinensis RchiOBHm_Chr4g0424331
rosa_laevigata RLG00000007485
rosa_multiflora Rmu_sc0002260.1_g000004
rosa_roxburghii Rroxscaffold_5G00366280
rosa_rugosa Rorug04G0195900
rosa_samantha Rh4AG252800 Rh4BG258200 Rh4CG269100 Rh4DG252600
rosa_wichuraiana Rw4G021800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
AatII GACGTC 1 cut(s) 1122
Acc36I ACCTGC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 789
AciI CCGC 3 cut(s) 147, 459, 984
AclI AACGTT 1 cut(s) 668
AclWI GGATC 2 cut(s) 450, 816
AcsI RAATTY 1 cut(s) 345
AcyI GRCGYC 1 cut(s) 1119
AfaI GTAC 5 cut(s) 444, 448, 496, 501, 829
AgsI TTSAA 6 cut(s) 89, 554, 600, 723, 938, 1043
AjnI CCWGG 1 cut(s) 289
AleI CACNNNNGTG 1 cut(s) 836
AloI GAACNNNNNNTCC 2 cut(s) 703, 735
AluBI AGCT 6 cut(s) 364, 419, 481, 533, 927, 945
AluI AGCT 6 cut(s) 364, 419, 481, 533, 927, 945
Alw21I GWGCWC 1 cut(s) 929
Alw26I GTCTC 2 cut(s) 386, 1128
AlwI GGATC 2 cut(s) 450, 816
AoxI GGCC 1 cut(s) 618
ApaI GGGCCC 1 cut(s) 622
ApeKI GCWGC 5 cut(s) 278, 419, 422, 743, 850
ApoI RAATTY 1 cut(s) 345
AspLEI GCGC 2 cut(s) 13, 438
AspS9I GGNCC 3 cut(s) 618, 619, 772
AsuHPI GGTGA 7 cut(s) 349, 907, 962, 963, 1085, 1096, 1136
AsuII TTCGAA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 772
BaeGI GKGCMC 1 cut(s) 622
BaeI ACNNNNGTAYC 2 cut(s) 1082, 1115
BanII GRGCYC 2 cut(s) 622, 929
BbsI GAAGAC 3 cut(s) 69, 662, 1031
Bbv12I GWGCWC 1 cut(s) 929
BbvI GCAGC 5 cut(s) 265, 406, 409, 730, 862
BcgI CGANNNNNNTGC 2 cut(s) 1102, 1136
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 1083
BclI TGATCA 3 cut(s) 396, 994, 1126
BcoDI GTCTC 2 cut(s) 386, 1128
BfaI CTAG 1 cut(s) 503
BfoI RGCGCY 1 cut(s) 14
BfuAI ACCTGC 1 cut(s) 122
BfuI GTATCC 1 cut(s) 1083
BglII AGATCT 2 cut(s) 69, 113
BisI GCNGC 6 cut(s) 279, 420, 423, 744, 851, 984
BlsI GCNGC 6 cut(s) 280, 421, 424, 745, 852, 985
BmcAI AGTACT 1 cut(s) 501
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 772
BmgT120I GGNCC 3 cut(s) 618, 619, 772
BmiI GGNNCC 3 cut(s) 620, 621, 774
BmrFI CCNGG 1 cut(s) 291
BpiI GAAGAC 3 cut(s) 69, 662, 1031
Bpu10I CCTNAGC 1 cut(s) 140
Bpu14I TTCGAA 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 214
BsaAI YACGTR 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 1119
BsaJI CCNNGG 2 cut(s) 94, 1094
BsaXI ACNNNNNCTCC 2 cut(s) 934, 964
Bse1I ACTGG 2 cut(s) 326, 591
Bse3DI GCAATG 1 cut(s) 1120
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 94, 1094
BseGI GGATG 2 cut(s) 384, 717
BseMI GCAATG 1 cut(s) 1120
BseMII CTCAG 2 cut(s) 155, 173
BseNI ACTGG 2 cut(s) 326, 591
BseRI GAGGAG 3 cut(s) 211, 233, 665
BseSI GKGCMC 1 cut(s) 622
BseXI GCAGC 5 cut(s) 265, 406, 409, 730, 862
BsgI GTGCAG 1 cut(s) 264
BshFI GGCC 1 cut(s) 620
BsiHKAI GWGCWC 1 cut(s) 929
BsmAI GTCTC 2 cut(s) 386, 1128
BsmI GAATGC 2 cut(s) 133, 985
BsnI GGCC 1 cut(s) 620
Bsp119I TTCGAA 1 cut(s) 410
Bsp120I GGGCCC 1 cut(s) 618
Bsp1286I GDGCHC 2 cut(s) 622, 929
Bsp143I GATC 7 cut(s) 69, 113, 396, 455, 808, 994, 1126
Bsp19I CCATGG 1 cut(s) 94
BspACI CCGC 3 cut(s) 147, 459, 984
BspANI GGCC 1 cut(s) 620
BspCNI CTCAG 2 cut(s) 156, 174
BspHI TCATGA 2 cut(s) 997, 1048
BspLI GGNNCC 3 cut(s) 620, 621, 774
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 2 cut(s) 450, 816
BspT104I TTCGAA 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 1120
BsrI ACTGG 2 cut(s) 326, 591
BssECI CCNNGG 2 cut(s) 94, 1094
BssMI GATC 7 cut(s) 69, 113, 396, 455, 808, 994, 1126
BssNI GRCGYC 1 cut(s) 1119
BssT1I CCWWGG 2 cut(s) 94, 1094
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 499, 794, 835
Bst6I CTCTTC 2 cut(s) 146, 642
BstACI GRCGYC 1 cut(s) 1119
BstBAI YACGTR 1 cut(s) 446
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 531
BstDEI CTNAG 3 cut(s) 140, 164, 182
BstDSI CCRYGG 1 cut(s) 94
BstEII GGTNACC 1 cut(s) 895
BstF5I GGATG 2 cut(s) 384, 717
BstH2I RGCGCY 1 cut(s) 14
BstHHI GCGC 2 cut(s) 13, 438
BstKTI GATC 7 cut(s) 72, 116, 399, 458, 811, 997, 1129
BstMAI GTCTC 2 cut(s) 386, 1128
BstMBI GATC 7 cut(s) 69, 113, 396, 455, 808, 994, 1126
BstMWI GCNNNNNNNGC 1 cut(s) 740
BstNI CCWGG 1 cut(s) 291
BstPI GGTNACC 1 cut(s) 895
BstSCI CCNGG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 622
BstSNI TACGTA 1 cut(s) 446
BstV1I GCAGC 5 cut(s) 265, 406, 409, 730, 862
BstV2I GAAGAC 3 cut(s) 69, 662, 1031
BstX2I RGATCY 3 cut(s) 69, 113, 455
BstXI CCANNNNNNTGG 1 cut(s) 838
BstYI RGATCY 3 cut(s) 69, 113, 455
BsuI GTATCC 1 cut(s) 1083
BsuRI GGCC 1 cut(s) 620
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 2 cut(s) 384, 717
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 4 cut(s) 246, 799, 831, 974
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 531
CciI TCATGA 2 cut(s) 997, 1048
CfoI GCGC 2 cut(s) 13, 438
Cfr13I GGNCC 3 cut(s) 618, 619, 772
Csp6I GTAC 5 cut(s) 443, 447, 495, 500, 828
CviAII CATG 7 cut(s) 95, 394, 463, 871, 890, 998, 1049
CviQI GTAC 5 cut(s) 443, 447, 495, 500, 828
DdeI CTNAG 3 cut(s) 140, 164, 182
DpnI GATC 7 cut(s) 71, 115, 398, 457, 810, 996, 1128
DpnII GATC 7 cut(s) 69, 113, 396, 455, 808, 994, 1126
Eam1104I CTCTTC 2 cut(s) 146, 642
EarI CTCTTC 2 cut(s) 146, 642
EciI GGCGGA 1 cut(s) 448
Ecl136II GAGCTC 1 cut(s) 927
Eco105I TACGTA 1 cut(s) 446
Eco130I CCWWGG 2 cut(s) 94, 1094
Eco24I GRGCYC 2 cut(s) 622, 929
Eco47I GGWCC 1 cut(s) 772
Eco53kI GAGCTC 1 cut(s) 927
Eco91I GGTNACC 1 cut(s) 895
EcoICRI GAGCTC 1 cut(s) 927
EcoO109I RGGNCCY 1 cut(s) 619
EcoO65I GGTNACC 1 cut(s) 895
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 2 cut(s) 94, 1094
EcoT38I GRGCYC 2 cut(s) 622, 929
ErhI CCWWGG 2 cut(s) 94, 1094
FaeI CATG 7 cut(s) 98, 397, 466, 874, 893, 1001, 1052
FatI CATG 7 cut(s) 94, 393, 462, 870, 889, 997, 1048
FauI CCCGC 1 cut(s) 140
FauNDI CATATG 1 cut(s) 778
FbaI TGATCA 3 cut(s) 396, 994, 1126
FblI GTMKAC 1 cut(s) 789
Fnu4HI GCNGC 6 cut(s) 279, 420, 423, 744, 851, 984
FokI GGATG 2 cut(s) 371, 724
FriOI GRGCYC 2 cut(s) 622, 929
Fsp4HI GCNGC 6 cut(s) 279, 420, 423, 744, 851, 984
FspBI CTAG 1 cut(s) 503
GlaI GCGC 2 cut(s) 12, 437
GluI GCNGC 6 cut(s) 279, 420, 423, 744, 851, 984
HaeII RGCGCY 1 cut(s) 14
HaeIII GGCC 1 cut(s) 620
HhaI GCGC 2 cut(s) 13, 438
Hin1I GRCGYC 1 cut(s) 1119
Hin1II CATG 7 cut(s) 98, 397, 466, 874, 893, 1001, 1052
Hin6I GCGC 2 cut(s) 11, 436
HinP1I GCGC 2 cut(s) 11, 436
HindIII AAGCTT 1 cut(s) 362
HinfI GANTC 3 cut(s) 337, 554, 907
HphI GGTGA 7 cut(s) 349, 907, 962, 963, 1085, 1096, 1136
Hpy166II GTNNAC 3 cut(s) 51, 790, 1076
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 3 cut(s) 73, 998, 1049
Hpy8I GTNNAC 3 cut(s) 51, 790, 1076
Hpy99I CGWCG 1 cut(s) 1124
HpyAV CCTTC 4 cut(s) 39, 95, 364, 932
HpyCH4III ACNGT 3 cut(s) 499, 794, 835
HpyCH4IV ACGT 3 cut(s) 445, 668, 1119
HpyCH4V TGCA 6 cut(s) 131, 159, 244, 281, 586, 682
HpyF10VI GCNNNNNNNGC 1 cut(s) 740
HpyF3I CTNAG 3 cut(s) 140, 164, 182
HpySE526I ACGT 3 cut(s) 445, 668, 1119
Hsp92I GRCGYC 1 cut(s) 1119
Hsp92II CATG 7 cut(s) 98, 397, 466, 874, 893, 1001, 1052
HspAI GCGC 2 cut(s) 11, 436
Ksp22I TGATCA 3 cut(s) 396, 994, 1126
Kzo9I GATC 7 cut(s) 69, 113, 396, 455, 808, 994, 1126
LmnI GCTCC 2 cut(s) 924, 942
LpnPI CCDG 9 cut(s) 117, 276, 303, 307, 543, 577, 604, 693, 744
Lsp1109I GCAGC 5 cut(s) 265, 406, 409, 730, 862
MaeI CTAG 1 cut(s) 503
MaeII ACGT 3 cut(s) 445, 668, 1119
MaeIII GTNAC 2 cut(s) 895, 969
MalI GATC 7 cut(s) 71, 115, 398, 457, 810, 996, 1128
MboI GATC 7 cut(s) 69, 113, 396, 455, 808, 994, 1126
MboII GAAGA 9 cut(s) 18, 71, 74, 163, 236, 306, 659, 667, 1031
MflI RGATCY 3 cut(s) 69, 113, 455
MhlI GDGCHC 2 cut(s) 622, 929
MluCI AATT 4 cut(s) 175, 345, 801, 1058
MlyI GAGTC 2 cut(s) 346, 916
MseI TTAA 4 cut(s) 237, 312, 560, 846
MslI CAYNNNNRTG 3 cut(s) 781, 836, 1053
MspR9I CCNGG 1 cut(s) 291
Mva1269I GAATGC 2 cut(s) 133, 985
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 1 cut(s) 740
NcoI CCATGG 1 cut(s) 94
NdeI CATATG 1 cut(s) 778
NdeII GATC 7 cut(s) 69, 113, 396, 455, 808, 994, 1126
NlaIII CATG 7 cut(s) 98, 397, 466, 874, 893, 1001, 1052
NlaIV GGNNCC 3 cut(s) 620, 621, 774
NmuCI GTSAC 2 cut(s) 895, 969
NspV TTCGAA 1 cut(s) 410
OliI CACNNNNGTG 1 cut(s) 836
PagI TCATGA 2 cut(s) 997, 1048
PctI GAATGC 2 cut(s) 133, 985
PfeI GAWTC 1 cut(s) 554
PkrI GCNGC 6 cut(s) 280, 421, 424, 745, 852, 985
PleI GAGTC 2 cut(s) 345, 915
PpsI GAGTC 2 cut(s) 345, 915
Ppu21I YACGTR 1 cut(s) 446
PsiI TTATAA 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 929
Psp1406I AACGTT 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 895
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 3 cut(s) 620, 621, 774
PspOMI GGGCCC 1 cut(s) 618
PspPI GGNCC 3 cut(s) 618, 619, 772
PsuI RGATCY 3 cut(s) 69, 113, 455
RsaI GTAC 5 cut(s) 444, 448, 496, 501, 829
RsaNI GTAC 5 cut(s) 443, 447, 495, 500, 828
RseI CAYNNNNRTG 3 cut(s) 781, 836, 1053
SacI GAGCTC 1 cut(s) 929
SaqAI TTAA 4 cut(s) 237, 312, 560, 846
SatI GCNGC 6 cut(s) 279, 420, 423, 744, 851, 984
Sau3AI GATC 7 cut(s) 69, 113, 396, 455, 808, 994, 1126
Sau96I GGNCC 3 cut(s) 618, 619, 772
ScaI AGTACT 1 cut(s) 501
SchI GAGTC 2 cut(s) 346, 916
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 622, 929
SfuI TTCGAA 1 cut(s) 410
SinI GGWCC 1 cut(s) 772
SmiMI CAYNNNNRTG 3 cut(s) 781, 836, 1053
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SnaBI TACGTA 1 cut(s) 446
Sse9I AATT 4 cut(s) 175, 345, 801, 1058
SsiI CCGC 3 cut(s) 147, 459, 984
SspI AATATT 1 cut(s) 934
SspMI CTAG 1 cut(s) 503
SstI GAGCTC 1 cut(s) 929
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 2 cut(s) 94, 1094
TaaI ACNGT 3 cut(s) 499, 794, 835
TaiI ACGT 3 cut(s) 448, 671, 1122
TaqI TCGA 3 cut(s) 410, 431, 1008
TasI AATT 4 cut(s) 175, 345, 801, 1058
TatI WGTACW 1 cut(s) 499
TauI GCSGC 1 cut(s) 986
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 4 cut(s) 237, 312, 560, 846
Tru9I TTAA 4 cut(s) 237, 312, 560, 846
TscAI CASTG 4 cut(s) 253, 799, 838, 981
TseFI GTSAC 2 cut(s) 895, 969
TseI GCWGC 5 cut(s) 278, 419, 422, 743, 850
Tsp45I GTSAC 2 cut(s) 895, 969
TspDTI ATGAA 6 cut(s) 383, 479, 651, 795, 1014, 1071
TspRI CASTG 4 cut(s) 253, 799, 838, 981
VpaK11BI GGWCC 1 cut(s) 772
XapI RAATTY 1 cut(s) 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 789
XspI CTAG 1 cut(s) 503
ZraI GACGTC 1 cut(s) 1120
ZrmI AGTACT 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.