Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0016308

Physical Location & Seq

Genomic Coordinates Reverse (-)

46553877 .. 46557114

Gene Structure 3238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G021800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGGAAGAGCGCCGTGCTGTGAAAAAGTTGGGCTAAAAAGAGGAAGGTGGACAGCCGAAGAAGACGAGATCTTGACAAACTACATTCAACTCCATGGAGAAGGCTCATGGAGATCTTTGCCCAAGAATGCAGGTTTGCTAAGGTGCGGGAAGAGTTGCAGACTGAGGTGGATAAATTATCTGAGGACTGACTTGAGGAGAGGGAACATCACACAAGAGGAGGAAGAAACCATTGTTAAGTTGCACACTGCTTTGGGTAATAGGTGGTCATTGATTGCTGCACACTTACCAGGAAGAACGGACAATGAGATTAAAAACTACTGGAACTCTCATTTGAGTCGCAAAATTTACACCTTCACCAAGCTTATGAAAAACGAATGTCTCATCCCCACCATGATCAATAATGTTTCGAAGTTAGCTGCTGCGAAATCGAAGCGCAGAGTACGTACAAGCAGATCCGCCATGAAAAGCAAGAATAAGCTCAACAAGAACGGTACAGTACTAGCCCCATTTCCACAAGTTCCAAAGCCAGCTTATAAGAGTGATGTGTTTGAATCATTAACCAGAGAAAACCCAAATCAAGTGCAAACCAGTCATTCAATGGGCTTGGAGTGTTGGGCCCCAAAAGAGAGAGATGAAAAAGAGGAAGAGGAGAAGACAATAAGAACGTTGGGTGGTATGCAAGGTTCTTGCTTGGATATTACAGCAGGGATGATTAGTTCAACTACTCCTGTTATATATGCTGCTAATAATGGAGAAAAAGAGGCATTGGACCCATATGAATGTGTAGACAGTGATGTAATTGTGGATCATAACCCAAGTGGGAGTACCAATGTTGTGAGAGAAAATGGGGTCATGGGTTTTACAGATGACCATGAGGTGACCATAAAGAGTCATCAAGGTATTTGGAGCTCAAATATTGAAGGGAGCTGTGGTGAGATGTATGCTTTCTCGTCACCACTGAATGCCGCCTTTGATGATCATGAATGGCTCGATTGTGATTGGTTTGGTGGTGGTGGTCTTCAATGTCATAATGATGAATTGGAGTTATGGGGTGAACGAGAGGTGAGGATACCTTGGTTATGGGAGAGTGGCAATGACGTCGGTGATCAAAGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

373

Amino Acids

42.12

Weight (kDa)

5.99

Isoelectric Point (pI)

52.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	4.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	1.7e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	1.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0016308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19310
malus_domestica	MD13G1158000.v1.1 MD16G1158800.v1.1
prunus_persica	Prupe.1G125300_v2.0.a1
pyrus_communis	pycom13g13510
rosa_chinensis	RchiOBHm_Chr4g0424331
rosa_laevigata	RLG00000007485
rosa_multiflora	Rmu_sc0002260.1_g000004
rosa_roxburghii	Rroxscaffold_5G00366280
rosa_rugosa	Rorug04G0195900
rosa_samantha	Rh4AG252800 Rh4BG258200 Rh4CG269100 Rh4DG252600
rosa_wichuraiana	Rw4G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AatII	GACGTC	1 cut(s)	1104
Acc36I	ACCTGC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	789
AciI	CCGC	3 cut(s)	147, 459, 969
AclI	AACGTT	1 cut(s)	668
AclWI	GGATC	2 cut(s)	450, 816
AcsI	RAATTY	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	1101
AfaI	GTAC	5 cut(s)	444, 448, 496, 501, 829
AgsI	TTSAA	6 cut(s)	89, 554, 600, 723, 923, 1025
AjnI	CCWGG	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	703, 735
AluBI	AGCT	6 cut(s)	364, 419, 481, 533, 912, 930
AluI	AGCT	6 cut(s)	364, 419, 481, 533, 912, 930
Alw21I	GWGCWC	1 cut(s)	914
Alw26I	GTCTC	2 cut(s)	386, 1110
AlwI	GGATC	2 cut(s)	450, 816
AoxI	GGCC	1 cut(s)	618
ApaI	GGGCCC	1 cut(s)	622
ApeKI	GCWGC	4 cut(s)	278, 419, 422, 743
ApoI	RAATTY	1 cut(s)	345
AspLEI	GCGC	2 cut(s)	13, 438
AspS9I	GGNCC	3 cut(s)	618, 619, 772
AsuHPI	GGTGA	7 cut(s)	349, 892, 947, 948, 1067, 1078, 1118
AsuII	TTCGAA	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	772
BaeGI	GKGCMC	1 cut(s)	622
BaeI	ACNNNNGTAYC	2 cut(s)	1064, 1097
BanII	GRGCYC	2 cut(s)	622, 914
BbsI	GAAGAC	3 cut(s)	69, 662, 1013
Bbv12I	GWGCWC	1 cut(s)	914
BbvI	GCAGC	4 cut(s)	265, 406, 409, 730
BcgI	CGANNNNNNTGC	2 cut(s)	1084, 1118
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	1065
BclI	TGATCA	3 cut(s)	396, 979, 1108
BcoDI	GTCTC	2 cut(s)	386, 1110
BfaI	CTAG	1 cut(s)	503
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	1065
BglII	AGATCT	2 cut(s)	69, 113
BisI	GCNGC	5 cut(s)	279, 420, 423, 744, 969
BlsI	GCNGC	5 cut(s)	280, 421, 424, 745, 970
BmcAI	AGTACT	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	3 cut(s)	618, 619, 772
BmiI	GGNNCC	3 cut(s)	620, 621, 774
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	3 cut(s)	69, 662, 1013
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	214
BsaAI	YACGTR	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	1101
BsaJI	CCNNGG	2 cut(s)	94, 1076
BsaXI	ACNNNNNCTCC	2 cut(s)	919, 949
Bse1I	ACTGG	2 cut(s)	326, 591
Bse3DI	GCAATG	1 cut(s)	1102
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	94, 1076
BseGI	GGATG	2 cut(s)	384, 717
BseMI	GCAATG	1 cut(s)	1102
BseMII	CTCAG	2 cut(s)	155, 173
BseNI	ACTGG	2 cut(s)	326, 591
BseRI	GAGGAG	3 cut(s)	211, 233, 665
BseSI	GKGCMC	1 cut(s)	622
BseXI	GCAGC	4 cut(s)	265, 406, 409, 730
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	914
BsmAI	GTCTC	2 cut(s)	386, 1110
BsmI	GAATGC	2 cut(s)	133, 970
BsnI	GGCC	1 cut(s)	620
Bsp119I	TTCGAA	1 cut(s)	410
Bsp120I	GGGCCC	1 cut(s)	618
Bsp1286I	GDGCHC	2 cut(s)	622, 914
Bsp143I	GATC	7 cut(s)	69, 113, 396, 455, 808, 979, 1108
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	3 cut(s)	147, 459, 969
BspANI	GGCC	1 cut(s)	620
BspCNI	CTCAG	2 cut(s)	156, 174
BspHI	TCATGA	1 cut(s)	982
BspLI	GGNNCC	3 cut(s)	620, 621, 774
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	2 cut(s)	450, 816
BspT104I	TTCGAA	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	1102
BsrI	ACTGG	2 cut(s)	326, 591
BssECI	CCNNGG	2 cut(s)	94, 1076
BssMI	GATC	7 cut(s)	69, 113, 396, 455, 808, 979, 1108
BssNI	GRCGYC	1 cut(s)	1101
BssT1I	CCWWGG	2 cut(s)	94, 1076
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	3 cut(s)	494, 499, 794
Bst6I	CTCTTC	2 cut(s)	146, 642
BstACI	GRCGYC	1 cut(s)	1101
BstBAI	YACGTR	1 cut(s)	446
BstBI	TTCGAA	1 cut(s)	410
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	3 cut(s)	140, 164, 182
BstDSI	CCRYGG	1 cut(s)	94
BstEII	GGTNACC	1 cut(s)	880
BstF5I	GGATG	2 cut(s)	384, 717
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 438
BstKTI	GATC	7 cut(s)	72, 116, 399, 458, 811, 982, 1111
BstMAI	GTCTC	2 cut(s)	386, 1110
BstMBI	GATC	7 cut(s)	69, 113, 396, 455, 808, 979, 1108
BstNI	CCWGG	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	880
BstSCI	CCNGG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	622
BstSNI	TACGTA	1 cut(s)	446
BstV1I	GCAGC	4 cut(s)	265, 406, 409, 730
BstV2I	GAAGAC	3 cut(s)	69, 662, 1013
BstX2I	RGATCY	3 cut(s)	69, 113, 455
BstYI	RGATCY	3 cut(s)	69, 113, 455
BsuI	GTATCC	1 cut(s)	1065
BsuRI	GGCC	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	384, 717
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	3 cut(s)	246, 799, 959
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	531
CciI	TCATGA	1 cut(s)	982
CfoI	GCGC	2 cut(s)	13, 438
Cfr13I	GGNCC	3 cut(s)	618, 619, 772
Csp6I	GTAC	5 cut(s)	443, 447, 495, 500, 828
CviAII	CATG	7 cut(s)	95, 108, 394, 463, 856, 875, 983
CviQI	GTAC	5 cut(s)	443, 447, 495, 500, 828
DdeI	CTNAG	3 cut(s)	140, 164, 182
DpnI	GATC	7 cut(s)	71, 115, 398, 457, 810, 981, 1110
DpnII	GATC	7 cut(s)	69, 113, 396, 455, 808, 979, 1108
Eam1104I	CTCTTC	2 cut(s)	146, 642
EarI	CTCTTC	2 cut(s)	146, 642
EciI	GGCGGA	1 cut(s)	448
Ecl136II	GAGCTC	1 cut(s)	912
Eco105I	TACGTA	1 cut(s)	446
Eco130I	CCWWGG	2 cut(s)	94, 1076
Eco24I	GRGCYC	2 cut(s)	622, 914
Eco47I	GGWCC	1 cut(s)	772
Eco53kI	GAGCTC	1 cut(s)	912
Eco91I	GGTNACC	1 cut(s)	880
EcoICRI	GAGCTC	1 cut(s)	912
EcoO109I	RGGNCCY	1 cut(s)	619
EcoO65I	GGTNACC	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	94, 1076
EcoT38I	GRGCYC	2 cut(s)	622, 914
ErhI	CCWWGG	2 cut(s)	94, 1076
FaeI	CATG	7 cut(s)	98, 111, 397, 466, 859, 878, 986
FatI	CATG	7 cut(s)	94, 107, 393, 462, 855, 874, 982
FauI	CCCGC	1 cut(s)	140
FauNDI	CATATG	1 cut(s)	778
FbaI	TGATCA	3 cut(s)	396, 979, 1108
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	5 cut(s)	279, 420, 423, 744, 969
FokI	GGATG	2 cut(s)	371, 724
FriOI	GRGCYC	2 cut(s)	622, 914
Fsp4HI	GCNGC	5 cut(s)	279, 420, 423, 744, 969
FspBI	CTAG	1 cut(s)	503
GlaI	GCGC	2 cut(s)	12, 437
GluI	GCNGC	5 cut(s)	279, 420, 423, 744, 969
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	620
HhaI	GCGC	2 cut(s)	13, 438
Hin1I	GRCGYC	1 cut(s)	1101
Hin1II	CATG	7 cut(s)	98, 111, 397, 466, 859, 878, 986
Hin6I	GCGC	2 cut(s)	11, 436
HinP1I	GCGC	2 cut(s)	11, 436
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	3 cut(s)	337, 554, 892
HphI	GGTGA	7 cut(s)	349, 892, 947, 948, 1067, 1078, 1118
Hpy166II	GTNNAC	3 cut(s)	51, 790, 1058
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	73, 983
Hpy8I	GTNNAC	3 cut(s)	51, 790, 1058
Hpy99I	CGWCG	1 cut(s)	1106
HpyAV	CCTTC	4 cut(s)	39, 95, 364, 917
HpyCH4III	ACNGT	3 cut(s)	494, 499, 794
HpyCH4IV	ACGT	3 cut(s)	445, 668, 1101
HpyCH4V	TGCA	6 cut(s)	131, 159, 244, 281, 586, 682
HpyF3I	CTNAG	3 cut(s)	140, 164, 182
HpySE526I	ACGT	3 cut(s)	445, 668, 1101
Hsp92I	GRCGYC	1 cut(s)	1101
Hsp92II	CATG	7 cut(s)	98, 111, 397, 466, 859, 878, 986
HspAI	GCGC	2 cut(s)	11, 436
Ksp22I	TGATCA	3 cut(s)	396, 979, 1108
Kzo9I	GATC	7 cut(s)	69, 113, 396, 455, 808, 979, 1108
LmnI	GCTCC	2 cut(s)	909, 927
LpnPI	CCDG	9 cut(s)	117, 276, 303, 307, 543, 577, 604, 693, 744
Lsp1109I	GCAGC	4 cut(s)	265, 406, 409, 730
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	3 cut(s)	445, 668, 1101
MaeIII	GTNAC	2 cut(s)	880, 954
MalI	GATC	7 cut(s)	71, 115, 398, 457, 810, 981, 1110
MboI	GATC	7 cut(s)	69, 113, 396, 455, 808, 979, 1108
MboII	GAAGA	9 cut(s)	18, 71, 74, 163, 236, 306, 659, 667, 1013
MflI	RGATCY	3 cut(s)	69, 113, 455
MhlI	GDGCHC	2 cut(s)	622, 914
MluCI	AATT	4 cut(s)	175, 345, 801, 1040
MlyI	GAGTC	2 cut(s)	346, 901
MseI	TTAA	3 cut(s)	237, 312, 560
MslI	CAYNNNNRTG	2 cut(s)	781, 1035
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	2 cut(s)	133, 970
MvaI	CCWGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	94
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	7 cut(s)	69, 113, 396, 455, 808, 979, 1108
NlaIII	CATG	7 cut(s)	98, 111, 397, 466, 859, 878, 986
NlaIV	GGNNCC	3 cut(s)	620, 621, 774
NmuCI	GTSAC	2 cut(s)	880, 954
NspV	TTCGAA	1 cut(s)	410
PagI	TCATGA	1 cut(s)	982
PctI	GAATGC	2 cut(s)	133, 970
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	5 cut(s)	280, 421, 424, 745, 970
PleI	GAGTC	2 cut(s)	345, 900
PpsI	GAGTC	2 cut(s)	345, 900
Ppu21I	YACGTR	1 cut(s)	446
PsiI	TTATAA	1 cut(s)	537
Psp124BI	GAGCTC	1 cut(s)	914
Psp1406I	AACGTT	1 cut(s)	668
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	880
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	620, 621, 774
PspOMI	GGGCCC	1 cut(s)	618
PspPI	GGNCC	3 cut(s)	618, 619, 772
PsrI	GAACNNNNNNTAC	2 cut(s)	670, 702
PsuI	RGATCY	3 cut(s)	69, 113, 455
RsaI	GTAC	5 cut(s)	444, 448, 496, 501, 829
RsaNI	GTAC	5 cut(s)	443, 447, 495, 500, 828
RseI	CAYNNNNRTG	2 cut(s)	781, 1035
SacI	GAGCTC	1 cut(s)	914
SaqAI	TTAA	3 cut(s)	237, 312, 560
SatI	GCNGC	5 cut(s)	279, 420, 423, 744, 969
Sau3AI	GATC	7 cut(s)	69, 113, 396, 455, 808, 979, 1108
Sau96I	GGNCC	3 cut(s)	618, 619, 772
ScaI	AGTACT	1 cut(s)	501
SchI	GAGTC	2 cut(s)	346, 901
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	2 cut(s)	622, 914
SfuI	TTCGAA	1 cut(s)	410
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	2 cut(s)	781, 1035
SmlI	CTYRAG	1 cut(s)	193
SmoI	CTYRAG	1 cut(s)	193
SnaBI	TACGTA	1 cut(s)	446
Sse9I	AATT	4 cut(s)	175, 345, 801, 1040
SsiI	CCGC	3 cut(s)	147, 459, 969
SspI	AATATT	1 cut(s)	919
SspMI	CTAG	1 cut(s)	503
SstI	GAGCTC	1 cut(s)	914
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	94, 1076
TaaI	ACNGT	3 cut(s)	494, 499, 794
TaiI	ACGT	3 cut(s)	448, 671, 1104
TaqI	TCGA	3 cut(s)	410, 431, 993
TasI	AATT	4 cut(s)	175, 345, 801, 1040
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	1 cut(s)	971
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	3 cut(s)	237, 312, 560
Tru9I	TTAA	3 cut(s)	237, 312, 560
TscAI	CASTG	3 cut(s)	253, 799, 966
TseFI	GTSAC	2 cut(s)	880, 954
TseI	GCWGC	4 cut(s)	278, 419, 422, 743
Tsp45I	GTSAC	2 cut(s)	880, 954
TspDTI	ATGAA	6 cut(s)	383, 479, 651, 795, 999, 1053
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	3 cut(s)	253, 799, 966
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	1 cut(s)	345
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XmiI	GTMKAC	1 cut(s)	789
XspI	CTAG	1 cut(s)	503
ZraI	GACGTC	1 cut(s)	1102
ZrmI	AGTACT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.