Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001746

Physical Location & Seq

Genomic Coordinates Reverse (-)

23052874 .. 23054310

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g19391.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGACCCCACAATCTTGGAGCAGTGTCCATCCACGGTGACGGTGCGGCGTAACCCTCACCGTAGAGCGAGGCCGTTAACTACTCCGGCAACCACAGCTGTCGGAATTCCAACTCCATCATGTACTGTGCCTAAAGTCCCTTTCCCGACGGAAGAGATCCTCTCCATGGACATATCCAACTCGAAACCCGACCCGGAGAATTTCCGAGTCTTCCTCCGAATTCGACCTCTGCTGAAGCTGTCGAACAAAAGGAGCGACGTCGCCGAAGATTCGAAGGCTAGATCCAAGAACGTGTGGCCGCAAAACCCTAGGAATGCGGCGAGAGAGCAACAAAAGAAGAAGAAAAGCCCTAGCGCCGAGGTCTGTGTCAAGGTGAACAATGCTCGCTCGGTGACGGTGTCGCCGCCTCTAGCCTTGCAGGAGCCTAATCGGCTCAAATCTGAGGTCTACGATGGCTTCTCTCATGTATTCTCCCCCGAGTCCTCTCAGCAGTGCATGGCGGGGTTCATCAGGAACGAAGAGCGCACTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048285 GO:0051225 GO:0051231 GO:0070925 GO:0071840 GO:0090307 GO:0098813 GO:0140014 GO:1902850 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

178

Amino Acids

19.84

Weight (kDa)

9.75

Isoelectric Point (pI)

75.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060
fragaria_vesca	FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_4g19391 FvH4_5g38380
malus_domestica	MD08G1010800.v1.1
prunus_persica	Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.8G272100_v2.0.a1 Prupe.8G272100_v2.0.a1
pyrus_communis	pycom08g00960
rosa_chinensis	RchiOBHm_Chr6g0303131
rosa_laevigata	RLG00000011105
rosa_multiflora	Rmu_co8047954.1_g000001 Rmu_sc0001706.1_g000038 Rmu_sc0028461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265850 Rroxscaffold_7G00164990
rosa_rugosa	Rorug06G0319300
rosa_samantha	Rh6AG433300 Rh6BG469400 Rh6CG445600 Rh6DG432400
rosa_wichuraiana	Rw6G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	5 cut(s)	46, 299, 317, 404, 500
AclWI	GGATC	2 cut(s)	151, 276
AcoI	YGGCCR	1 cut(s)	296
AcsI	RAATTY	3 cut(s)	105, 199, 219
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	291
AluBI	AGCT	2 cut(s)	98, 238
AluI	AGCT	2 cut(s)	98, 238
AlwI	GGATC	2 cut(s)	151, 276
Ama87I	CYCGRG	1 cut(s)	476
AoxI	GGCC	2 cut(s)	71, 296
ApoI	RAATTY	3 cut(s)	105, 199, 219
ArsI	GACNNNNNNTTYG	2 cut(s)	429, 461
AspA2I	CCTAGG	1 cut(s)	308
AspLEI	GCGC	2 cut(s)	356, 525
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	4 cut(s)	49, 50, 385, 403
AsuII	TTCGAA	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	308
BbsI	GAAGAC	1 cut(s)	202
BccI	CCATC	3 cut(s)	37, 124, 446
BceAI	ACGGC	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	194
BfaI	CTAG	4 cut(s)	279, 309, 351, 410
BfoI	RGCGCY	1 cut(s)	357
BglI	GCCNNNNNGGC	1 cut(s)	430
BisI	GCNGC	4 cut(s)	47, 299, 318, 404
BlnI	CCTAGG	1 cut(s)	308
BlsI	GCNGC	4 cut(s)	48, 300, 319, 405
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 423
BmrFI	CCNGG	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	202
BplI	GAGNNNNNCTC	4 cut(s)	146, 178, 198, 230
Bpu14I	TTCGAA	1 cut(s)	272
BpuMI	CCSGG	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	4 cut(s)	33, 165, 308, 357
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
BseDI	CCNNGG	4 cut(s)	33, 165, 308, 357
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	2 cut(s)	432, 500
BshFI	GGCC	2 cut(s)	73, 298
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	2 cut(s)	86, 194
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	73, 298
BsoBI	CYCGRG	1 cut(s)	476
Bsp119I	TTCGAA	1 cut(s)	272
Bsp143I	GATC	2 cut(s)	156, 281
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	5 cut(s)	46, 299, 317, 404, 500
BspANI	GGCC	2 cut(s)	73, 298
BspCNI	CTCAG	2 cut(s)	433, 499
BspLI	GGNNCC	2 cut(s)	6, 423
BspPI	GGATC	2 cut(s)	151, 276
BspQI	GCTCTTC	1 cut(s)	513
BspT104I	TTCGAA	1 cut(s)	272
BssECI	CCNNGG	4 cut(s)	33, 165, 308, 357
BssMI	GATC	2 cut(s)	156, 281
BssNI	GRCGYC	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	165, 308
Bst4CI	ACNGT	5 cut(s)	37, 43, 62, 127, 397
Bst6I	CTCTTC	2 cut(s)	147, 513
BstACI	GRCGYC	1 cut(s)	258
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	441, 486
BstDSI	CCRYGG	2 cut(s)	33, 165
BstF5I	GGATG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	357
BstHHI	GCGC	2 cut(s)	356, 525
BstKTI	GATC	2 cut(s)	159, 284
BstMBI	GATC	2 cut(s)	156, 281
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 430
BstSCI	CCNGG	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	156, 281
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	2 cut(s)	156, 281
BsuRI	GGCC	2 cut(s)	73, 298
BtgI	CCRYGG	2 cut(s)	33, 165
BtsCI	GGATG	1 cut(s)	29
BtsI	GCAGTG	2 cut(s)	29, 497
BtsIMutI	CAGTG	2 cut(s)	29, 497
Cac8I	GCNNGC	1 cut(s)	385
CfoI	GCGC	2 cut(s)	356, 525
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	4 cut(s)	120, 166, 464, 496
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	2 cut(s)	441, 486
DpnI	GATC	2 cut(s)	158, 283
DpnII	GATC	2 cut(s)	156, 281
EaeI	YGGCCR	1 cut(s)	296
Eam1104I	CTCTTC	2 cut(s)	147, 513
EarI	CTCTTC	2 cut(s)	147, 513
Eco130I	CCWWGG	2 cut(s)	165, 308
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	254
Eco88I	CYCGRG	1 cut(s)	476
EcoRI	GAATTC	2 cut(s)	105, 219
EcoT14I	CCWWGG	2 cut(s)	165, 308
ErhI	CCWWGG	2 cut(s)	165, 308
FaeI	CATG	4 cut(s)	123, 169, 467, 499
FaiI	YATR	5 cut(s)	121, 167, 173, 465, 497
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	4 cut(s)	119, 165, 463, 495
FauI	CCCGC	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	4 cut(s)	47, 299, 318, 404
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	4 cut(s)	47, 299, 318, 404
FspBI	CTAG	4 cut(s)	279, 309, 351, 410
GlaI	GCGC	2 cut(s)	355, 524
GluI	GCNGC	4 cut(s)	47, 299, 318, 404
HaeII	RGCGCY	1 cut(s)	357
HaeIII	GGCC	2 cut(s)	73, 298
HapII	CCGG	2 cut(s)	86, 194
HhaI	GCGC	2 cut(s)	356, 525
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	4 cut(s)	123, 169, 467, 499
Hin6I	GCGC	2 cut(s)	354, 523
HinP1I	GCGC	2 cut(s)	354, 523
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	3 cut(s)	207, 269, 479
HpaI	GTTAAC	1 cut(s)	78
HpaII	CCGG	2 cut(s)	86, 194
HphI	GGTGA	4 cut(s)	49, 50, 385, 403
Hpy166II	GTNNAC	3 cut(s)	78, 376, 448
Hpy188I	TCNGA	4 cut(s)	104, 206, 218, 442
Hpy188III	TCNNGA	2 cut(s)	145, 511
Hpy8I	GTNNAC	3 cut(s)	78, 376, 448
Hpy99I	CGWCG	3 cut(s)	151, 260, 263
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	5 cut(s)	37, 43, 62, 127, 397
HpyCH4IV	ACGT	2 cut(s)	258, 291
HpyCH4V	TGCA	2 cut(s)	418, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 430
HpyF3I	CTNAG	2 cut(s)	441, 486
HpySE526I	ACGT	2 cut(s)	258, 291
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	4 cut(s)	123, 169, 467, 499
HspAI	GCGC	2 cut(s)	354, 523
KspAI	GTTAAC	1 cut(s)	78
Kzo9I	GATC	2 cut(s)	156, 281
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	3 cut(s)	19, 252, 421
LpnPI	CCDG	4 cut(s)	99, 207, 404, 496
MaeI	CTAG	4 cut(s)	279, 309, 351, 410
MaeII	ACGT	2 cut(s)	258, 291
MaeIII	GTNAC	3 cut(s)	37, 50, 391
MalI	GATC	2 cut(s)	158, 283
MboI	GATC	2 cut(s)	156, 281
MboII	GAAGA	6 cut(s)	164, 202, 278, 349, 352, 530
MflI	RGATCY	2 cut(s)	156, 281
MluCI	AATT	3 cut(s)	105, 199, 219
MlyI	GAGTC	2 cut(s)	216, 488
MmeI	TCCRAC	3 cut(s)	82, 134, 201
MnlI	CCTC	9 cut(s)	63, 66, 170, 224, 237, 352, 417, 436, 493
MseI	TTAA	2 cut(s)	77, 532
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	2 cut(s)	86, 194
MspR9I	CCNGG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	95, 430
NciI	CCSGG	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	2 cut(s)	156, 281
NlaIII	CATG	4 cut(s)	123, 169, 467, 499
NlaIV	GGNNCC	2 cut(s)	6, 423
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	2 cut(s)	37, 391
NspV	TTCGAA	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	513
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	269
PflFI	GACNNNGTC	1 cut(s)	397
PkrI	GCNGC	4 cut(s)	48, 300, 319, 405
PleI	GAGTC	2 cut(s)	215, 487
PpsI	GAGTC	2 cut(s)	215, 487
PspN4I	GGNNCC	2 cut(s)	6, 423
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	2 cut(s)	156, 281
PsyI	GACNNNGTC	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	2 cut(s)	77, 532
SatI	GCNGC	4 cut(s)	47, 299, 318, 404
Sau3AI	GATC	2 cut(s)	156, 281
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	2 cut(s)	216, 488
ScrFI	CCNGG	1 cut(s)	194
SetI	ASST	8 cut(s)	100, 229, 240, 261, 294, 363, 375, 447
SfuI	TTCGAA	1 cut(s)	272
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	3 cut(s)	105, 199, 219
SsiI	CCGC	5 cut(s)	46, 299, 317, 404, 500
SspMI	CTAG	4 cut(s)	279, 309, 351, 410
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	2 cut(s)	165, 308
TaaI	ACNGT	5 cut(s)	37, 43, 62, 127, 397
TaiI	ACGT	2 cut(s)	261, 294
TaqI	TCGA	4 cut(s)	182, 223, 242, 272
TasI	AATT	3 cut(s)	105, 199, 219
TatI	WGTACW	1 cut(s)	122
TauI	GCSGC	4 cut(s)	49, 301, 320, 406
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	77, 532
Tru9I	TTAA	2 cut(s)	77, 532
TscAI	CASTG	2 cut(s)	29, 497
TseFI	GTSAC	2 cut(s)	37, 391
Tsp45I	GTSAC	2 cut(s)	37, 391
TspDTI	ATGAA	1 cut(s)	496
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	29, 497
Tth111I	GACNNNGTC	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	3 cut(s)	105, 199, 219
XmaJI	CCTAGG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	447
XspI	CTAG	4 cut(s)	279, 309, 351, 410
ZraI	GACGTC	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.