Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001706.1

Orthogroup ID

OG0001746

Physical Location & Seq

Genomic Coordinates Reverse (-)

162231 .. 163863

Gene Structure 1633 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001706.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ctgaccccgagaatctcagtcctcctccgaattcgacctctactaaggccgtcgggcaaggcttcgcctgagattcaaaggccagatccaaaaacttttggccgcaaaaccctaagaatgcggcgagggaacagatcgaagaagaagaaaatccctaacgctgaggtctgtctcaaggtgaataatgctcgctcagtgacggtgacgccgccactagccttgcaggaacctaaccggctcaagtctgaggtctatgatggcttctcgcacgtcttatcctccgattcttctcaggttttgcttcttcgacttcaaaatttttgggaaagtatgaatctgatggacgcgctagatcgttctagaaacgatcagagaccacgacccgttctcgagcccggacgacccgcgacggcgacctgctacggttgtccgatgtccggcgatgatacggtgcgcaccggtcacgttcgacgcgtctcgtcgtcatcgttccacctgtggtcacggatcatcgaggagagagaatcgaagcctggaaggttcgattcttccggcggttccgacgcgttttccggcgatgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048285 GO:0051225 GO:0051231 GO:0070925 GO:0071840 GO:0090307 GO:0098813 GO:0140014 GO:1902850 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

194

Amino Acids

21.75

Weight (kDa)

10.54

Isoelectric Point (pI)

64.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060
fragaria_vesca	FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_4g19391 FvH4_5g38380
malus_domestica	MD08G1010800.v1.1
prunus_persica	Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.8G272100_v2.0.a1 Prupe.8G272100_v2.0.a1
pyrus_communis	pycom08g00960
rosa_chinensis	RchiOBHm_Chr6g0303131
rosa_laevigata	RLG00000011105
rosa_multiflora	Rmu_co8047954.1_g000001 Rmu_sc0001706.1_g000038 Rmu_sc0028461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265850 Rroxscaffold_7G00164990
rosa_rugosa	Rorug06G0319300
rosa_samantha	Rh6AG433300 Rh6BG469400 Rh6CG445600 Rh6DG432400
rosa_wichuraiana	Rw6G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	425
AccII	CGCG	4 cut(s)	347, 407, 474, 566
AciI	CCGC	5 cut(s)	103, 121, 209, 405, 555
AclWI	GGATC	2 cut(s)	80, 515
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	2 cut(s)	30, 316
AcyI	GRCGYC	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	437
AflIII	ACRYGT	2 cut(s)	472, 564
AgeI	ACCGGT	1 cut(s)	458
AgsI	TTSAA	2 cut(s)	77, 314
AjiI	CACGTC	1 cut(s)	271
AjnI	CCWGG	1 cut(s)	532
Alw26I	GTCTC	3 cut(s)	176, 367, 481
AlwI	GGATC	2 cut(s)	80, 515
Ama87I	CYCGRG	2 cut(s)	7, 389
AoxI	GGCC	3 cut(s)	47, 80, 100
ApoI	RAATTY	2 cut(s)	30, 316
AsiGI	ACCGGT	1 cut(s)	458
AspLEI	GCGC	2 cut(s)	349, 456
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	190, 214
AvaI	CYCGRG	2 cut(s)	7, 389
BanII	GRGCYC	1 cut(s)	396
BbvCI	CCTCAGC	1 cut(s)	162
BccI	CCATC	2 cut(s)	251, 334
BceAI	ACGGC	2 cut(s)	34, 426
BciT130I	CCWGG	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	396
BcoDI	GTCTC	3 cut(s)	176, 367, 481
BfaI	CTAG	3 cut(s)	215, 350, 360
BfuAI	ACCTGC	1 cut(s)	425
BisI	GCNGC	3 cut(s)	103, 122, 209
BlsI	GCNGC	3 cut(s)	104, 123, 210
Bme1390I	CCNGG	2 cut(s)	396, 534
BmeT110I	CYCGRG	2 cut(s)	7, 389
BmgBI	CACGTC	1 cut(s)	271
BmiI	GGNNCC	2 cut(s)	228, 559
BmrFI	CCNGG	2 cut(s)	396, 534
BmsI	GCATC	1 cut(s)	568
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	2 cut(s)	158, 224
BpuMI	CCSGG	1 cut(s)	396
BsaHI	GRCGYC	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse118I	RCCGGY	2 cut(s)	234, 458
BseBI	CCWGG	1 cut(s)	534
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMII	CTCAG	6 cut(s)	30, 60, 153, 207, 237, 305
BseRI	GAGGAG	2 cut(s)	14, 530
Bsh1236I	CGCG	4 cut(s)	347, 407, 474, 566
BshFI	GGCC	3 cut(s)	49, 82, 102
BshTI	ACCGGT	1 cut(s)	458
BsiHKCI	CYCGRG	2 cut(s)	7, 389
BsiSI	CCGG	6 cut(s)	235, 396, 438, 459, 552, 573
BslI	CCNNNNNNNGG	1 cut(s)	437
BsmAI	GTCTC	3 cut(s)	176, 367, 481
BsmBI	CGTCTC	1 cut(s)	481
BsmI	GAATGC	1 cut(s)	123
BsnI	GGCC	3 cut(s)	49, 82, 102
Bso31I	GGTCTC	1 cut(s)	367
BsoBI	CYCGRG	2 cut(s)	7, 389
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp143I	GATC	5 cut(s)	85, 134, 352, 367, 507
BspACI	CCGC	5 cut(s)	103, 121, 209, 405, 555
BspANI	GGCC	3 cut(s)	49, 82, 102
BspCNI	CTCAG	6 cut(s)	29, 61, 154, 206, 238, 304
BspFNI	CGCG	4 cut(s)	347, 407, 474, 566
BspLI	GGNNCC	2 cut(s)	228, 559
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	2 cut(s)	80, 515
BspTNI	GGTCTC	1 cut(s)	367
BsrFI	RCCGGY	2 cut(s)	234, 458
BssAI	RCCGGY	2 cut(s)	234, 458
BssMI	GATC	5 cut(s)	85, 134, 352, 367, 507
BssNI	GRCGYC	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	3 cut(s)	202, 425, 451
BstACI	GRCGYC	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	8 cut(s)	16, 44, 69, 113, 162, 193, 246, 291
BstFNI	CGCG	4 cut(s)	347, 407, 474, 566
BstHHI	GCGC	2 cut(s)	349, 456
BstKTI	GATC	5 cut(s)	88, 137, 355, 370, 510
BstMAI	GTCTC	3 cut(s)	176, 367, 481
BstMBI	GATC	5 cut(s)	85, 134, 352, 367, 507
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	2 cut(s)	394, 532
BstUI	CGCG	4 cut(s)	347, 407, 474, 566
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	3 cut(s)	49, 82, 102
BtgZI	GCGATG	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	425
Cac8I	GCNNGC	1 cut(s)	190
CfoI	GCGC	2 cut(s)	349, 456
Cfr10I	RCCGGY	2 cut(s)	234, 458
CseI	GACGC	5 cut(s)	214, 353, 463, 480, 572
CspAI	ACCGGT	1 cut(s)	458
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	1 cut(s)	582
CviJI	RGCY	9 cut(s)	49, 62, 82, 102, 218, 238, 261, 394, 532
CviKI_1	RGCY	9 cut(s)	49, 62, 82, 102, 218, 238, 261, 394, 532
DdeI	CTNAG	8 cut(s)	16, 44, 69, 113, 162, 193, 246, 291
DpnI	GATC	5 cut(s)	87, 136, 354, 369, 509
DpnII	GATC	5 cut(s)	85, 134, 352, 367, 507
EaeI	YGGCCR	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	396
Eco31I	GGTCTC	1 cut(s)	367
Eco88I	CYCGRG	2 cut(s)	7, 389
EcoRI	GAATTC	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	532
EcoT22I	ATGCAT	1 cut(s)	583
EcoT38I	GRGCYC	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	1 cut(s)	585
FaiI	YATR	3 cut(s)	255, 332, 583
FatI	CATG	1 cut(s)	581
FauI	CCCGC	1 cut(s)	412
Fnu4HI	GCNGC	3 cut(s)	103, 122, 209
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	3 cut(s)	103, 122, 209
FspAI	RTGCGCAY	1 cut(s)	455
FspBI	CTAG	3 cut(s)	215, 350, 360
FspI	TGCGCA	1 cut(s)	455
GlaI	GCGC	2 cut(s)	348, 455
GluI	GCNGC	3 cut(s)	103, 122, 209
HaeIII	GGCC	3 cut(s)	49, 82, 102
HapII	CCGG	6 cut(s)	235, 396, 438, 459, 552, 573
HgaI	GACGC	5 cut(s)	214, 353, 463, 480, 572
HhaI	GCGC	2 cut(s)	349, 456
Hin1I	GRCGYC	1 cut(s)	206
Hin1II	CATG	1 cut(s)	585
Hin6I	GCGC	2 cut(s)	347, 454
HinP1I	GCGC	2 cut(s)	347, 454
HinfI	GANTC	6 cut(s)	12, 73, 284, 334, 524, 545
HpaII	CCGG	6 cut(s)	235, 396, 438, 459, 552, 573
HphI	GGTGA	2 cut(s)	190, 214
Hpy188I	TCNGA	7 cut(s)	29, 247, 283, 339, 372, 432, 562
Hpy188III	TCNNGA	2 cut(s)	360, 389
Hpy99I	CGWCG	5 cut(s)	55, 412, 474, 484, 566
HpyAV	CCTTC	1 cut(s)	531
HpyCH4III	ACNGT	3 cut(s)	202, 425, 451
HpyCH4IV	ACGT	2 cut(s)	270, 465
HpyCH4V	TGCA	2 cut(s)	223, 581
HpyF3I	CTNAG	8 cut(s)	16, 44, 69, 113, 162, 193, 246, 291
HpySE526I	ACGT	2 cut(s)	270, 465
Hsp92I	GRCGYC	1 cut(s)	206
Hsp92II	CATG	1 cut(s)	585
HspAI	GCGC	2 cut(s)	347, 454
Kzo9I	GATC	5 cut(s)	85, 134, 352, 367, 507
LweI	GCATC	1 cut(s)	568
MaeI	CTAG	3 cut(s)	215, 350, 360
MaeII	ACGT	2 cut(s)	270, 465
MaeIII	GTNAC	4 cut(s)	196, 202, 461, 501
MalI	GATC	5 cut(s)	87, 136, 354, 369, 509
MboI	GATC	5 cut(s)	85, 134, 352, 367, 507
MboII	GAAGA	6 cut(s)	151, 154, 157, 279, 296, 540
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	2 cut(s)	30, 316
MluI	ACGCGT	2 cut(s)	472, 564
MmeI	TCCRAC	1 cut(s)	585
MnlI	CCTC	8 cut(s)	32, 35, 48, 119, 157, 241, 289, 508
Mph1103I	ATGCAT	1 cut(s)	583
MspI	CCGG	6 cut(s)	235, 396, 438, 459, 552, 573
MspR9I	CCNGG	2 cut(s)	396, 534
Mva1269I	GAATGC	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	534
MvnI	CGCG	4 cut(s)	347, 407, 474, 566
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	5 cut(s)	85, 134, 352, 367, 507
NlaIII	CATG	1 cut(s)	585
NlaIV	GGNNCC	2 cut(s)	228, 559
NmuCI	GTSAC	4 cut(s)	196, 202, 461, 501
NsbI	TGCGCA	1 cut(s)	455
NsiI	ATGCAT	1 cut(s)	583
PaeR7I	CTCGAG	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	2 cut(s)	471, 485
PctI	GAATGC	1 cut(s)	123
PfeI	GAWTC	6 cut(s)	12, 73, 284, 334, 524, 545
PinAI	ACCGGT	1 cut(s)	458
PkrI	GCNGC	3 cut(s)	104, 123, 210
Psp6I	CCWGG	1 cut(s)	532
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	2 cut(s)	228, 559
PsuI	RGATCY	1 cut(s)	85
SatI	GCNGC	3 cut(s)	103, 122, 209
Sau3AI	GATC	5 cut(s)	85, 134, 352, 367, 507
ScrFI	CCNGG	2 cut(s)	396, 534
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	1 cut(s)	568
Sfr274I	CTCGAG	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	3 cut(s)	173, 239, 389
SmoI	CTYRAG	3 cut(s)	173, 239, 389
Sse9I	AATT	2 cut(s)	30, 316
SsiI	CCGC	5 cut(s)	103, 121, 209, 405, 555
SspMI	CTAG	3 cut(s)	215, 350, 360
StyD4I	CCNGG	2 cut(s)	394, 532
TaaI	ACNGT	3 cut(s)	202, 425, 451
TaiI	ACGT	2 cut(s)	273, 468
TaqI	TCGA	8 cut(s)	34, 137, 307, 390, 469, 513, 527, 543
TasI	AATT	2 cut(s)	30, 316
TauI	GCSGC	3 cut(s)	105, 124, 211
TfiI	GAWTC	6 cut(s)	12, 73, 284, 334, 524, 545
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	4 cut(s)	196, 202, 461, 501
Tsp45I	GTSAC	4 cut(s)	196, 202, 461, 501
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	1 cut(s)	520
TspRI	CASTG	1 cut(s)	201
XapI	RAATTY	2 cut(s)	30, 316
XbaI	TCTAGA	1 cut(s)	359
XhoI	CTCGAG	1 cut(s)	389
XspI	CTAG	3 cut(s)	215, 350, 360
Zsp2I	ATGCAT	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.