Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8047954.1

Orthogroup ID

OG0001746

Physical Location & Seq

Genomic Coordinates Reverse (-)

10 .. 558

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8047954.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

gtcgtcggagatttaaaggccagatccaaaaacgtttggccgcaaaaccctaagaacgccgcggcgagggaacagaagaagaagaaaagccctaacgccgaggtctgtgtcaaggtgaacagtgctcgctcggtgactgtggctccgccactagccttgcaggaacctaaccggctcaagtctgaggtctacgatggcttctcacacgtcttctcctccgattcttctcaggaggaggtgtatgagatgatggtgaagccattggtggaagacttcttgaagggcaagagtggaatgttggctgcaatggggcctagtggctccggcaagactcatacagttttcggttgccccagggagcccggaatggtaccacttgcgcttcaacacctattcaagcgagttccggatagcattaccgagtctccgaggtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048285 GO:0051225 GO:0051231 GO:0070925 GO:0071840 GO:0090307 GO:0098813 GO:0140014 GO:1902850 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

145

Amino Acids

15.88

Weight (kDa)

9.42

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060
fragaria_vesca	FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_4g19391 FvH4_5g38380
malus_domestica	MD08G1010800.v1.1
prunus_persica	Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.8G272100_v2.0.a1 Prupe.8G272100_v2.0.a1
pyrus_communis	pycom08g00960
rosa_chinensis	RchiOBHm_Chr6g0303131
rosa_laevigata	RLG00000011105
rosa_multiflora	Rmu_co8047954.1_g000001 Rmu_sc0001706.1_g000038 Rmu_sc0028461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265850 Rroxscaffold_7G00164990
rosa_rugosa	Rorug06G0319300
rosa_samantha	Rh6AG433300 Rh6BG469400 Rh6CG445600 Rh6DG432400
rosa_wichuraiana	Rw6G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	370
AccB1I	GGYRCC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	62
AccIII	TCCGGA	1 cut(s)	406
AciI	CCGC	4 cut(s)	41, 60, 62, 146
AclI	AACGTT	1 cut(s)	33
AclWI	GGATC	1 cut(s)	18
AcoI	YGGCCR	1 cut(s)	38
AfaI	GTAC	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	66
AflIII	ACRYGT	1 cut(s)	205
AgsI	TTSAA	3 cut(s)	280, 386, 397
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	353
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	429
AlwI	GGATC	1 cut(s)	18
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	3 cut(s)	18, 38, 311
ApeKI	GCWGC	1 cut(s)	302
Asp718I	GGTACC	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	311
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	3 cut(s)	127, 145, 265
BanI	GGYRCC	1 cut(s)	370
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	202, 276
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	2 cut(s)	188, 244
BciT130I	CCWGG	1 cut(s)	355
BcnI	CCSGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	2 cut(s)	152, 315
BisI	GCNGC	4 cut(s)	41, 60, 63, 303
BlsI	GCNGC	4 cut(s)	42, 61, 64, 304
Bme1390I	CCNGG	2 cut(s)	355, 363
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	311
BmiI	GGNNCC	6 cut(s)	144, 165, 312, 322, 360, 372
BmrFI	CCNGG	2 cut(s)	355, 363
BpiI	GAAGAC	2 cut(s)	202, 276
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	1 cut(s)	363
BsaJI	CCNNGG	5 cut(s)	60, 99, 353, 354, 428
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	7 cut(s)	127, 157, 197, 224, 227, 254, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	66
Bse118I	RCCGGY	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	312
BseAI	TCCGGA	1 cut(s)	406
BseBI	CCWGG	1 cut(s)	355
BseDI	CCNNGG	5 cut(s)	60, 99, 353, 354, 428
BseLI	CCNNNNNNNGG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	174, 242
BseRI	GAGGAG	2 cut(s)	205, 248
BseXI	GCAGC	1 cut(s)	289
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	3 cut(s)	20, 40, 313
BshNI	GGYRCC	1 cut(s)	370
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	4 cut(s)	172, 324, 363, 407
BslI	CCNNNNNNNGG	1 cut(s)	66
BsmAI	GTCTC	1 cut(s)	429
BsnI	GGCC	3 cut(s)	20, 40, 313
Bsp1286I	GDGCHC	2 cut(s)	127, 363
Bsp13I	TCCGGA	1 cut(s)	406
Bsp143I	GATC	1 cut(s)	23
BspACI	CCGC	4 cut(s)	41, 60, 62, 146
BspANI	GGCC	3 cut(s)	20, 40, 313
BspCNI	CTCAG	2 cut(s)	175, 241
BspEI	TCCGGA	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	6 cut(s)	144, 165, 312, 322, 360, 372
BspPI	GGATC	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	5 cut(s)	60, 99, 353, 354, 428
BssMI	GATC	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	355
Bst4CI	ACNGT	3 cut(s)	122, 139, 340
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	3 cut(s)	51, 183, 228
BstDSI	CCRYGG	1 cut(s)	60
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	1 cut(s)	26
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	355
BstSCI	CCNGG	2 cut(s)	353, 361
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	2 cut(s)	202, 276
BstX2I	RGATCY	1 cut(s)	23
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	3 cut(s)	20, 40, 313
BtgI	CCRYGG	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	208
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	382
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	311
Cfr42I	CCGCGG	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	371
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	3 cut(s)	51, 183, 228
DpnI	GATC	1 cut(s)	25
DpnII	GATC	1 cut(s)	23
DraI	TTTAAA	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	363
FaiI	YATR	2 cut(s)	243, 336
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	41, 60, 63, 303
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	4 cut(s)	41, 60, 63, 303
FspBI	CTAG	2 cut(s)	152, 315
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	4 cut(s)	41, 60, 63, 303
HaeIII	GGCC	3 cut(s)	20, 40, 313
HapII	CCGG	4 cut(s)	172, 324, 363, 407
HhaI	GCGC	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	3 cut(s)	221, 331, 422
HpaII	CCGG	4 cut(s)	172, 324, 363, 407
HphI	GGTGA	3 cut(s)	127, 145, 265
Hpy166II	GTNNAC	2 cut(s)	118, 190
Hpy188I	TCNGA	4 cut(s)	8, 184, 220, 429
Hpy188III	TCNNGA	3 cut(s)	230, 277, 407
Hpy8I	GTNNAC	2 cut(s)	118, 190
Hpy99I	CGWCG	1 cut(s)	8
HpyAV	CCTTC	1 cut(s)	274
HpyCH4III	ACNGT	3 cut(s)	122, 139, 340
HpyCH4IV	ACGT	2 cut(s)	33, 207
HpyCH4V	TGCA	2 cut(s)	160, 305
HpyF3I	CTNAG	3 cut(s)	51, 183, 228
HpySE526I	ACGT	2 cut(s)	33, 207
HspAI	GCGC	1 cut(s)	380
Kpn2I	TCCGGA	1 cut(s)	406
KpnI	GGTACC	1 cut(s)	374
KspI	CCGCGG	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	23
LmnI	GCTCC	3 cut(s)	148, 326, 358
LpnPI	CCDG	9 cut(s)	34, 146, 185, 215, 337, 340, 367, 376, 420
Lsp1109I	GCAGC	1 cut(s)	289
MaeI	CTAG	2 cut(s)	152, 315
MaeII	ACGT	2 cut(s)	33, 207
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	25
MboI	GATC	1 cut(s)	23
MboII	GAAGA	6 cut(s)	88, 91, 94, 202, 216, 281
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	2 cut(s)	127, 363
MlyI	GAGTC	2 cut(s)	325, 431
MnlI	CCTC	7 cut(s)	60, 94, 178, 226, 226, 229, 423
MroI	TCCGGA	1 cut(s)	406
MseI	TTAA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	4 cut(s)	172, 324, 363, 407
MspR9I	CCNGG	2 cut(s)	355, 363
MvaI	CCWGG	1 cut(s)	355
MvnI	CGCG	1 cut(s)	62
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	1 cut(s)	23
NlaIV	GGNNCC	6 cut(s)	144, 165, 312, 322, 360, 372
NmeAIII	GCCGAG	1 cut(s)	124
NmuCI	GTSAC	1 cut(s)	133
PasI	CCCWGGG	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	4 cut(s)	42, 61, 64, 304
PleI	GAGTC	2 cut(s)	325, 430
PpsI	GAGTC	2 cut(s)	325, 430
Psp1406I	AACGTT	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	353
PspN4I	GGNNCC	6 cut(s)	144, 165, 312, 322, 360, 372
PspPI	GGNCC	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SacII	CCGCGG	1 cut(s)	63
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	4 cut(s)	41, 60, 63, 303
Sau3AI	GATC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	311
SchI	GAGTC	2 cut(s)	325, 431
ScrFI	CCNGG	2 cut(s)	355, 363
SduI	GDGCHC	2 cut(s)	127, 363
SetI	ASST	9 cut(s)	36, 105, 117, 169, 189, 210, 240, 393, 434
Sfr303I	CCGCGG	1 cut(s)	63
SgrBI	CCGCGG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	4 cut(s)	41, 60, 62, 146
SspMI	CTAG	2 cut(s)	152, 315
StyD4I	CCNGG	2 cut(s)	353, 361
TaaI	ACNGT	3 cut(s)	122, 139, 340
TaiI	ACGT	2 cut(s)	36, 210
TauI	GCSGC	3 cut(s)	43, 62, 65
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	133
TspRI	CASTG	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	2 cut(s)	152, 315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.