Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001746

Physical Location & Seq

Genomic Coordinates Forward (+)

59244719 .. 59253664

Gene Structure 8946 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGATCGAATGCGGCAAAGAAGAGAGAGAGCGAGGCCCCGGACTACTCCGCAACGCACCGCAGGAGTCCGGTCTTGTAATCTGCCGGAAGTCCCTTTCCCGACAGAAGAAATTCTCTCCATGGACATATCGAGTTGGAAACCCGACCCCGAGAATCTCGGCCTTCCTCCGATTCGACCTCTACCGAGGTCGTCGGGCAAGGCGTCACCGGAGATTCAAAAGCCGGATCTAAAAACGTTTGGCCGCAAAACCCTAAGAATGCGGCGAGGGAATAGATCGAAGAAGAAGAAAAGCCCTAACGCCGAGGTCCGTGTCAAGGTGAATAGTGCTCGCCCGGTGACAGTGGCGGCGCCACCGGCCTTGCAGAACCTAACCGGCTCAAGTCCGAGGTCTATGATGGCTTCTCACACATCTTCTCCTCCAATTCTTCTCGTGTTTTGCTTCTTCGACTTCAAAATTTTTGGTTTCGAGTTTGATTTCGCCTTCCTGCACGCGCTTTGCATGTGTGGAAGAGTTGTGTTCATATGTGCGAAGTCTTTCTTATCATTTACACGTGTCGACACCATGGGCAATATGAAAACTCTCAAAAAGACACCAAAAGTACTGTTCATCAACCCGGCAGAGATTACCCGTGTTAATGCAATTCAATTGAACCCGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048285 GO:0051225 GO:0051231 GO:0070925 GO:0071840 GO:0090307 GO:0098813 GO:0140014 GO:1902850 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

220

Amino Acids

24.85

Weight (kDa)

10.81

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060
fragaria_vesca	FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_4g19391 FvH4_5g38380
malus_domestica	MD08G1010800.v1.1
prunus_persica	Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.8G272100_v2.0.a1 Prupe.8G272100_v2.0.a1
pyrus_communis	pycom08g00960
rosa_chinensis	RchiOBHm_Chr6g0303131
rosa_laevigata	RLG00000011105
rosa_multiflora	Rmu_co8047954.1_g000001 Rmu_sc0001706.1_g000038 Rmu_sc0028461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265850 Rroxscaffold_7G00164990
rosa_rugosa	Rorug06G0319300
rosa_samantha	Rh6AG433300 Rh6BG469400 Rh6CG445600 Rh6DG432400
rosa_wichuraiana	Rw6G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	558
AccII	CGCG	1 cut(s)	494
AciI	CCGC	6 cut(s)	13, 50, 60, 244, 262, 347
AclI	AACGTT	1 cut(s)	236
AclWI	GGATC	2 cut(s)	12, 234
AcoI	YGGCCR	1 cut(s)	241
AcsI	RAATTY	2 cut(s)	111, 456
AcvI	CACGTG	1 cut(s)	554
AcyI	GRCGYC	2 cut(s)	203, 350
AfaI	GTAC	2 cut(s)	603, 659
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	2 cut(s)	551, 553
AgsI	TTSAA	4 cut(s)	218, 454, 647, 652
Alw21I	GWGCWC	1 cut(s)	331
AlwI	GGATC	2 cut(s)	12, 234
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	4 cut(s)	35, 160, 241, 357
ApoI	RAATTY	2 cut(s)	111, 456
Asp700I	GAANNNNTTC	2 cut(s)	111, 536
AspLEI	GCGC	2 cut(s)	352, 496
AspS9I	GGNCC	2 cut(s)	36, 307
AsuC2I	CCSGG	3 cut(s)	40, 335, 617
AsuHPI	GGTGA	3 cut(s)	198, 331, 349
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	431
BbrPI	CACGTG	1 cut(s)	554
Bbv12I	GWGCWC	1 cut(s)	331
BccI	CCATC	1 cut(s)	391
BcnI	CCSGG	3 cut(s)	40, 335, 617
BfoI	RGCGCY	1 cut(s)	353
BisI	GCNGC	4 cut(s)	14, 244, 263, 348
BlsI	GCNGC	4 cut(s)	15, 245, 264, 349
BmcAI	AGTACT	1 cut(s)	603
Bme1390I	CCNGG	3 cut(s)	40, 335, 617
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	36, 307
BmiI	GGNNCC	2 cut(s)	38, 351
BmrFI	CCNGG	3 cut(s)	40, 335, 617
BpuEI	CTTGAG	1 cut(s)	364
BpuMI	CCSGG	3 cut(s)	40, 335, 617
BsaAI	YACGTR	1 cut(s)	554
BsaHI	GRCGYC	2 cut(s)	203, 350
BsaJI	CCNNGG	6 cut(s)	38, 120, 185, 303, 386, 564
BsaWI	WCCGGW	2 cut(s)	69, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	400, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse118I	RCCGGY	2 cut(s)	355, 374
BseDI	CCNNGG	6 cut(s)	38, 120, 185, 303, 386, 564
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	473
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	4 cut(s)	37, 162, 243, 359
BshNI	GGYRCC	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	331
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	9 cut(s)	40, 70, 86, 209, 224, 335, 356, 375, 617
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	77
BsmI	GAATGC	2 cut(s)	15, 264
BsnI	GGCC	4 cut(s)	37, 162, 243, 359
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	3 cut(s)	4, 226, 275
Bsp19I	CCATGG	2 cut(s)	120, 564
BspACI	CCGC	6 cut(s)	13, 50, 60, 244, 262, 347
BspANI	GGCC	4 cut(s)	37, 162, 243, 359
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	2 cut(s)	38, 351
BspPI	GGATC	2 cut(s)	12, 234
BspT107I	GGYRCC	1 cut(s)	349
BsrFI	RCCGGY	2 cut(s)	355, 374
BssAI	RCCGGY	2 cut(s)	355, 374
BssECI	CCNNGG	6 cut(s)	38, 120, 185, 303, 386, 564
BssMI	GATC	3 cut(s)	4, 226, 275
BssNI	GRCGYC	2 cut(s)	203, 350
BssSI	CACGAG	1 cut(s)	431
BssT1I	CCWWGG	2 cut(s)	120, 564
Bst2BI	CACGAG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	343, 606
Bst6I	CTCTTC	2 cut(s)	16, 505
BstACI	GRCGYC	2 cut(s)	203, 350
BstBAI	YACGTR	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	331, 492
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	2 cut(s)	120, 564
BstFNI	CGCG	1 cut(s)	494
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	2 cut(s)	352, 496
BstKTI	GATC	3 cut(s)	7, 229, 278
BstMBI	GATC	3 cut(s)	4, 226, 275
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	3 cut(s)	38, 333, 615
BstUI	CGCG	1 cut(s)	494
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	4 cut(s)	37, 162, 243, 359
BtgI	CCRYGG	2 cut(s)	120, 564
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	331, 492
CfoI	GCGC	2 cut(s)	352, 496
Cfr10I	RCCGGY	2 cut(s)	355, 374
Cfr13I	GGNCC	2 cut(s)	36, 307
CseI	GACGC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	602, 658
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	3 cut(s)	121, 502, 565
CviJI	RGCY	8 cut(s)	37, 162, 223, 243, 294, 359, 378, 401
CviKI_1	RGCY	8 cut(s)	37, 162, 223, 243, 294, 359, 378, 401
CviQI	GTAC	2 cut(s)	602, 658
DdeI	CTNAG	1 cut(s)	254
DinI	GGCGCC	1 cut(s)	351
DpnI	GATC	3 cut(s)	6, 228, 277
DpnII	GATC	3 cut(s)	4, 226, 275
EaeI	YGGCCR	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	16, 505
EarI	CTCTTC	2 cut(s)	16, 505
Eco130I	CCWWGG	2 cut(s)	120, 564
Eco47I	GGWCC	1 cut(s)	307
Eco72I	CACGTG	1 cut(s)	554
Eco88I	CYCGRG	1 cut(s)	149
EcoO109I	RGGNCCY	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	120, 564
EgeI	GGCGCC	1 cut(s)	351
EheI	GGCGCC	1 cut(s)	351
ErhI	CCWWGG	2 cut(s)	120, 564
FaeI	CATG	3 cut(s)	124, 505, 568
FaiI	YATR	8 cut(s)	122, 128, 395, 503, 524, 526, 566, 575
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	3 cut(s)	120, 501, 564
FauNDI	CATATG	1 cut(s)	524
FblI	GTMKAC	1 cut(s)	558
Fnu4HI	GCNGC	4 cut(s)	14, 244, 263, 348
Fsp4HI	GCNGC	4 cut(s)	14, 244, 263, 348
GlaI	GCGC	2 cut(s)	351, 495
GluI	GCNGC	4 cut(s)	14, 244, 263, 348
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	4 cut(s)	37, 162, 243, 359
HapII	CCGG	9 cut(s)	40, 70, 86, 209, 224, 335, 356, 375, 617
HgaI	GACGC	1 cut(s)	192
HhaI	GCGC	2 cut(s)	352, 496
Hin1I	GRCGYC	2 cut(s)	203, 350
Hin1II	CATG	3 cut(s)	124, 505, 568
Hin6I	GCGC	2 cut(s)	350, 494
HinP1I	GCGC	2 cut(s)	350, 494
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	4 cut(s)	66, 154, 172, 214
HpaII	CCGG	9 cut(s)	40, 70, 86, 209, 224, 335, 356, 375, 617
HphI	GGTGA	3 cut(s)	198, 331, 349
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	2 cut(s)	171, 387
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	2 cut(s)	173, 493
HpyCH4III	ACNGT	2 cut(s)	343, 606
HpyCH4IV	ACGT	2 cut(s)	236, 553
HpyCH4V	TGCA	4 cut(s)	364, 490, 501, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	2 cut(s)	236, 553
Hsp92I	GRCGYC	2 cut(s)	203, 350
Hsp92II	CATG	3 cut(s)	124, 505, 568
HspAI	GCGC	2 cut(s)	350, 494
KasI	GGCGCC	1 cut(s)	349
Kzo9I	GATC	3 cut(s)	4, 226, 275
MaeII	ACGT	2 cut(s)	236, 553
MaeIII	GTNAC	2 cut(s)	204, 337
MalI	GATC	3 cut(s)	6, 228, 277
MboI	GATC	3 cut(s)	4, 226, 275
MboII	GAAGA	9 cut(s)	33, 119, 292, 295, 298, 405, 419, 436, 522
MfeI	CAATTG	1 cut(s)	647
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	5 cut(s)	111, 423, 456, 642, 647
Mly113I	GGCGCC	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	8 cut(s)	27, 177, 180, 189, 260, 298, 381, 429
MroXI	GAANNNNTTC	2 cut(s)	111, 536
MseI	TTAA	1 cut(s)	636
MspI	CCGG	9 cut(s)	40, 70, 86, 209, 224, 335, 356, 375, 617
MspR9I	CCNGG	3 cut(s)	40, 335, 617
MunI	CAATTG	1 cut(s)	647
Mva1269I	GAATGC	2 cut(s)	15, 264
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	356
NarI	GGCGCC	1 cut(s)	350
NciI	CCSGG	3 cut(s)	40, 335, 617
NcoI	CCATGG	2 cut(s)	120, 564
NdeI	CATATG	1 cut(s)	524
NdeII	GATC	3 cut(s)	4, 226, 275
NlaIII	CATG	3 cut(s)	124, 505, 568
NlaIV	GGNNCC	2 cut(s)	38, 351
NmeAIII	GCCGAG	2 cut(s)	138, 328
NmuCI	GTSAC	2 cut(s)	204, 337
NspI	RCATGY	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PctI	GAATGC	2 cut(s)	15, 264
PdmI	GAANNNNTTC	2 cut(s)	111, 536
PfeI	GAWTC	3 cut(s)	154, 172, 214
PkrI	GCNGC	4 cut(s)	15, 245, 264, 349
PleI	GAGTC	1 cut(s)	74
PluTI	GGCGCC	1 cut(s)	353
PmaCI	CACGTG	1 cut(s)	554
PmlI	CACGTG	1 cut(s)	554
PpsI	GAGTC	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	554
Psp1406I	AACGTT	1 cut(s)	236
PspCI	CACGTG	1 cut(s)	554
PspN4I	GGNNCC	2 cut(s)	38, 351
PspPI	GGNCC	2 cut(s)	36, 307
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	2 cut(s)	603, 659
RsaNI	GTAC	2 cut(s)	602, 658
SalI	GTCGAC	1 cut(s)	557
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	4 cut(s)	14, 244, 263, 348
Sau3AI	GATC	3 cut(s)	4, 226, 275
Sau96I	GGNCC	2 cut(s)	36, 307
ScaI	AGTACT	1 cut(s)	603
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	3 cut(s)	40, 335, 617
SduI	GDGCHC	1 cut(s)	331
SetI	ASST	8 cut(s)	181, 191, 239, 309, 321, 372, 392, 556
SfoI	GGCGCC	1 cut(s)	351
SinI	GGWCC	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	379
SmoI	CTYRAG	1 cut(s)	379
Sse9I	AATT	5 cut(s)	111, 423, 456, 642, 647
SsiI	CCGC	6 cut(s)	13, 50, 60, 244, 262, 347
SspDI	GGCGCC	1 cut(s)	349
StyD4I	CCNGG	3 cut(s)	38, 333, 615
StyI	CCWWGG	2 cut(s)	120, 564
TaaI	ACNGT	2 cut(s)	343, 606
TaiI	ACGT	2 cut(s)	239, 556
TaqI	TCGA	7 cut(s)	7, 131, 175, 278, 447, 468, 558
TasI	AATT	5 cut(s)	111, 423, 456, 642, 647
TatI	WGTACW	1 cut(s)	601
TauI	GCSGC	4 cut(s)	16, 246, 265, 350
TfiI	GAWTC	3 cut(s)	154, 172, 214
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	1 cut(s)	348
TseFI	GTSAC	2 cut(s)	204, 337
Tsp45I	GTSAC	2 cut(s)	204, 337
TspDTI	ATGAA	3 cut(s)	511, 590, 598
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	2 cut(s)	111, 456
XceI	RCATGY	1 cut(s)	505
XmiI	GTMKAC	1 cut(s)	558
XmnI	GAANNNNTTC	2 cut(s)	111, 536
ZrmI	AGTACT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.