Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028461.1

Orthogroup ID

OG0001746

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 480

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028461.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggtaccacttgcgcttcaacacctattcaagcgagttccggatagcattaccgagtctccgaggtcatttttcatatcaatgtttgaaataagtaccgaacgaggtaaagcagagaaatggattgatttatctccaaatgggggtgaaataactatgcaacaatctaacctgaaaggcctacaagagatagccatatctgatactcgacaggcagaatccttagttgcgcaggcaatgcaaaaacgtgccactgctacgacaaattcaaacagccagtcaaggtgcgtgatagctctattctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048285 GO:0051225 GO:0051231 GO:0070925 GO:0071840 GO:0090307 GO:0098813 GO:0140014 GO:1902850 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

101

Amino Acids

11.23

Weight (kDa)

7.93

Isoelectric Point (pI)

60.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060
fragaria_vesca	FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_4g19391 FvH4_5g38380
malus_domestica	MD08G1010800.v1.1
prunus_persica	Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.8G272100_v2.0.a1 Prupe.8G272100_v2.0.a1
pyrus_communis	pycom08g00960
rosa_chinensis	RchiOBHm_Chr6g0303131
rosa_laevigata	RLG00000011105
rosa_multiflora	Rmu_co8047954.1_g000001 Rmu_sc0001706.1_g000038 Rmu_sc0028461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265850 Rroxscaffold_7G00164990
rosa_rugosa	Rorug06G0319300
rosa_samantha	Rh6AG433300 Rh6BG469400 Rh6CG445600 Rh6DG432400
rosa_wichuraiana	Rw6G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	231
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AccIII	TCCGGA	1 cut(s)	40
AcsI	RAATTY	1 cut(s)	265
AfaI	GTAC	2 cut(s)	6, 97
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	20, 31, 89, 270
AluBI	AGCT	1 cut(s)	296
AluI	AGCT	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	63
Aor13HI	TCCGGA	1 cut(s)	40
AoxI	GGCC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	265
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp718I	GGTACC	1 cut(s)	4
AspLEI	GCGC	2 cut(s)	16, 232
AsuHPI	GGTGA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	4
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	243
BseAI	TCCGGA	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMI	GCAATG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	180
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	180
Bsp13I	TCCGGA	1 cut(s)	40
BspANI	GGCC	1 cut(s)	180
BspEI	TCCGGA	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	6
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	223
BstHHI	GCGC	2 cut(s)	16, 232
BstMAI	GTCTC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	234
CfoI	GCGC	2 cut(s)	16, 232
Csp6I	GTAC	2 cut(s)	5, 96
CviJI	RGCY	4 cut(s)	180, 194, 276, 296
CviKI_1	RGCY	4 cut(s)	180, 194, 276, 296
CviQI	GTAC	2 cut(s)	5, 96
DdeI	CTNAG	1 cut(s)	223
Eco147I	AGGCCT	1 cut(s)	180
FaiI	YATR	3 cut(s)	77, 158, 197
FspBI	CTAG	1 cut(s)	304
FspI	TGCGCA	1 cut(s)	231
GlaI	GCGC	2 cut(s)	15, 231
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	2 cut(s)	16, 232
Hin6I	GCGC	2 cut(s)	14, 230
HinP1I	GCGC	2 cut(s)	14, 230
HinfI	GANTC	2 cut(s)	56, 218
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	2 cut(s)	63, 202
Hpy188III	TCNNGA	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	160, 241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	238
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	1 cut(s)	247
HspAI	GCGC	2 cut(s)	14, 230
Kpn2I	TCCGGA	1 cut(s)	40
KpnI	GGTACC	1 cut(s)	8
LpnPI	CCDG	5 cut(s)	54, 185, 197, 218, 290
MaeI	CTAG	1 cut(s)	304
MaeII	ACGT	1 cut(s)	247
MluCI	AATT	1 cut(s)	265
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	2 cut(s)	57, 98
MroI	TCCGGA	1 cut(s)	40
MslI	CAYNNNNRTG	1 cut(s)	80
MspI	CCGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	238
NlaIV	GGNNCC	1 cut(s)	6
NsbI	TGCGCA	1 cut(s)	231
PceI	AGGCCT	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	218
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	6
RsaI	GTAC	2 cut(s)	6, 97
RsaNI	GTAC	2 cut(s)	5, 96
RseI	CAYNNNNRTG	1 cut(s)	80
SchI	GAGTC	1 cut(s)	65
SetI	ASST	7 cut(s)	27, 68, 109, 174, 250, 287, 298
SmiMI	CAYNNNNRTG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	265
SseBI	AGGCCT	1 cut(s)	180
SspMI	CTAG	1 cut(s)	304
StuI	AGGCCT	1 cut(s)	180
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	1 cut(s)	208
TasI	AATT	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	1 cut(s)	259
TspDTI	ATGAA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	259
XapI	RAATTY	1 cut(s)	265
XspI	CTAG	1 cut(s)	304

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.