Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001746

Physical Location & Seq

Genomic Coordinates Reverse (-)

28364857 .. 28365113

Gene Structure 257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGACCCCACAATCCTGGAGCAGTGTCCATCCACGGTGACGGTGCGGCGTAACCCTCACCGTAGAGCGAGGCCGTTAACTACTCCGGCAACCACAGCCGCCGGAATTCCAACTCCATCATGTACTGTGCCTAAGGTCCCTTTCCCGATGGAAGAGATCCTCTCCATGGACATATTCAACTCGAAACCCGACCCGGAGAATTTCCGAGTCTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000278 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007052 GO:0007059 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022607 GO:0032991 GO:0042623 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048285 GO:0051225 GO:0051231 GO:0070925 GO:0071840 GO:0090307 GO:0098813 GO:0140014 GO:1902850 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

73

Amino Acids

8.04

Weight (kDa)

7.84

Isoelectric Point (pI)

67.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060 AT1G20060
fragaria_vesca	FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_2g38240 FvH4_4g19391 FvH4_5g38380
malus_domestica	MD08G1010800.v1.1
prunus_persica	Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.1G363400_v2.0.a1 Prupe.8G272100_v2.0.a1 Prupe.8G272100_v2.0.a1
pyrus_communis	pycom08g00960
rosa_chinensis	RchiOBHm_Chr6g0303131
rosa_laevigata	RLG00000011105
rosa_multiflora	Rmu_co8047954.1_g000001 Rmu_sc0001706.1_g000038 Rmu_sc0028461.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265850 Rroxscaffold_7G00164990
rosa_rugosa	Rorug06G0319300
rosa_samantha	Rh6AG433300 Rh6BG469400 Rh6CG445600 Rh6DG432400
rosa_wichuraiana	Rw6G037570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	46, 99
AclWI	GGATC	1 cut(s)	151
AcsI	RAATTY	2 cut(s)	105, 199
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	15
AlwI	GGATC	1 cut(s)	151
AoxI	GGCC	1 cut(s)	71
ApoI	RAATTY	2 cut(s)	105, 199
AspS9I	GGNCC	2 cut(s)	4, 136
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	2 cut(s)	49, 50
AvaII	GGWCC	2 cut(s)	4, 136
AxyI	CCTNAGG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	202
BccI	CCATC	3 cut(s)	37, 124, 142
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	194
BisI	GCNGC	2 cut(s)	47, 99
BlsI	GCNGC	2 cut(s)	48, 100
Bme1390I	CCNGG	2 cut(s)	17, 194
Bme18I	GGWCC	2 cut(s)	4, 136
BmgT120I	GGNCC	2 cut(s)	4, 136
BmiI	GGNNCC	2 cut(s)	6, 138
BmrFI	CCNGG	2 cut(s)	17, 194
BpiI	GAAGAC	1 cut(s)	202
BplI	GAGNNNNNCTC	3 cut(s)	146, 178, 198
BpmI	CTGGAG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	33, 165
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse21I	CCTNAGG	1 cut(s)	132
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	33, 165
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	73
BsiSI	CCGG	3 cut(s)	86, 102, 194
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	156
Bsp19I	CCATGG	1 cut(s)	165
BspACI	CCGC	2 cut(s)	46, 99
BspANI	GGCC	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	6, 138
BspPI	GGATC	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	33, 165
BssMI	GATC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	4 cut(s)	37, 43, 62, 127
Bst6I	CTCTTC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	2 cut(s)	33, 165
BstF5I	GGATG	1 cut(s)	29
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	15, 192
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	156
Bsu36I	CCTNAGG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	2 cut(s)	33, 165
BtsCI	GGATG	1 cut(s)	29
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	4, 136
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	2 cut(s)	120, 166
CviJI	RGCY	2 cut(s)	73, 98
CviKI_1	RGCY	2 cut(s)	73, 98
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	4, 136
Eco81I	CCTNAGG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRI	GAATTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	2 cut(s)	123, 169
FaiI	YATR	3 cut(s)	121, 167, 173
FaqI	GGGAC	1 cut(s)	122
FatI	CATG	2 cut(s)	119, 165
Fnu4HI	GCNGC	2 cut(s)	47, 99
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	47, 99
GluI	GCNGC	2 cut(s)	47, 99
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	3 cut(s)	86, 102, 194
Hin1II	CATG	2 cut(s)	123, 169
HincII	GTYRAC	1 cut(s)	78
HindII	GTYRAC	1 cut(s)	78
HinfI	GANTC	1 cut(s)	207
HpaI	GTTAAC	1 cut(s)	78
HpaII	CCGG	3 cut(s)	86, 102, 194
HphI	GGTGA	2 cut(s)	49, 50
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	2 cut(s)	206, 218
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	78
HpyCH4III	ACNGT	4 cut(s)	37, 43, 62, 127
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	123, 169
KspAI	GTTAAC	1 cut(s)	78
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	5 cut(s)	2, 29, 99, 115, 207
MaeIII	GTNAC	2 cut(s)	37, 50
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	2 cut(s)	164, 202
MflI	RGATCY	1 cut(s)	156
MluCI	AATT	2 cut(s)	105, 199
MlyI	GAGTC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	3 cut(s)	63, 66, 170
MseI	TTAA	1 cut(s)	77
MspI	CCGG	3 cut(s)	86, 102, 194
MspR9I	CCNGG	2 cut(s)	17, 194
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	95
NciI	CCSGG	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	165
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	123, 169
NlaIV	GGNNCC	2 cut(s)	6, 138
NmuCI	GTSAC	1 cut(s)	37
PfoI	TCCNGGA	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	48, 100
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PpuMI	RGGWCCY	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	2 cut(s)	6, 138
PspPI	GGNCC	2 cut(s)	4, 136
PspPPI	RGGWCCY	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	156
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	2 cut(s)	47, 99
Sau3AI	GATC	1 cut(s)	156
Sau96I	GGNCC	2 cut(s)	4, 136
SchI	GAGTC	1 cut(s)	216
ScrFI	CCNGG	2 cut(s)	17, 194
SetI	ASST	1 cut(s)	138
SinI	GGWCC	2 cut(s)	4, 136
Sse9I	AATT	2 cut(s)	105, 199
SsiI	CCGC	2 cut(s)	46, 99
StyD4I	CCNGG	2 cut(s)	15, 192
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	4 cut(s)	37, 43, 62, 127
TaqI	TCGA	1 cut(s)	182
TasI	AATT	2 cut(s)	105, 199
TatI	WGTACW	1 cut(s)	122
TauI	GCSGC	2 cut(s)	49, 101
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	1 cut(s)	29
TseFI	GTSAC	1 cut(s)	37
Tsp45I	GTSAC	1 cut(s)	37
TspRI	CASTG	1 cut(s)	29
VpaK11BI	GGWCC	2 cut(s)	4, 136
XapI	RAATTY	2 cut(s)	105, 199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.