Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011555

Physical Location & Seq

Genomic Coordinates Forward (+)

23485675 .. 23487497

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATGAGAGAGTTCCAAACCCCACACAAGGACCATGCTCTGCCTCCTCCCAAGCTCTCCGCTCGCGTCTCCAAGAAGACTGTTCCGAAGAAGAAGAGCTTGAACTCTGCGTTTTCTTCAATCTCCGAAGATCTACAAGTCCCGCACTCGGTGGATTCCACTCCGATCTCTGTGATTTCTGAGATCGACGAGGTCAATCGTGATGTCGAGATCACCGAGAGTCTGACGACCCTGCCAGATCCATCTCTCTCAGCTTCAACAGAGACCTTGTTCACTTCTGATCTCTCTCCGTCTTCAGAGTCCACGATTTCAAGCCATGCCTCTTGGAGTGTTGCTAAATGTGAAAATGATGGCTCAAAGTTTGGTTCTATTGGGGCTGAGGTTGTAGCAAGCTTTCTCAAGCAAGCTCGGACTCAGGTCTTAAACTCTGCTGGTGTGGATGCCAAATCCAAGAAGCATCTGGATGCATTGGTTGAGATTGTGATAGAGGACTGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

17.81

Weight (kDa)

5.33

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011555)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20060 FvH4_4g20280 FvH4_4g20350
malus_domestica	MD13G1151000.v1.1 MD16G1151500.v1.1
prunus_persica	Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1
pyrus_communis	pycom13g12980
rosa_chinensis	RchiOBHm_Chr4g0425771
rosa_laevigata	RLG00000007341
rosa_multiflora	Rmu_sc0002094.1_g000006
rosa_roxburghii	Rroxscaffold_5G00367760
rosa_rugosa	Rorug04G0206100
rosa_samantha	Rh4AG263100 Rh4BG269100 Rh4CG281400 Rh4DG265400
rosa_wichuraiana	Rw4G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	60, 143
AclWI	GGATC	1 cut(s)	233
AcuI	CTGAAG	1 cut(s)	279
AdeI	CACNNNGTG	1 cut(s)	151
AfiI	CCNNNNNNNGG	2 cut(s)	28, 148
AgsI	TTSAA	4 cut(s)	103, 120, 258, 312
AluBI	AGCT	5 cut(s)	55, 99, 254, 393, 407
AluI	AGCT	5 cut(s)	55, 99, 254, 393, 407
Alw26I	GTCTC	2 cut(s)	73, 257
AlwI	GGATC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	83, 285
BbvCI	CCTCAGC	1 cut(s)	378
BccI	CCATC	2 cut(s)	250, 344
BcoDI	GTCTC	2 cut(s)	73, 257
BglII	AGATCT	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	31
BmsI	GCATC	3 cut(s)	430, 454, 466
BoxI	GACNNNNGTC	1 cut(s)	416
BpiI	GAAGAC	2 cut(s)	83, 285
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 148
BseGI	GGATG	2 cut(s)	445, 469
BseLI	CCNNNNNNNGG	2 cut(s)	28, 148
BseMII	CTCAG	4 cut(s)	171, 264, 369, 428
BseRI	GAGGAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	28, 148
BsmAI	GTCTC	2 cut(s)	73, 257
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	125
Bso31I	GGTCTC	1 cut(s)	257
Bsp143I	GATC	6 cut(s)	130, 165, 183, 210, 238, 280
BspACI	CCGC	2 cut(s)	60, 143
BspCNI	CTCAG	4 cut(s)	172, 263, 370, 427
BspFNI	CGCG	1 cut(s)	66
BspPI	GGATC	1 cut(s)	233
BspQI	GCTCTTC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	62
BssMI	GATC	6 cut(s)	130, 165, 183, 210, 238, 280
Bst4CI	ACNGT	2 cut(s)	82, 494
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	3 cut(s)	64, 391, 405
BstDEI	CTNAG	4 cut(s)	180, 250, 378, 414
BstF5I	GGATG	2 cut(s)	445, 469
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	6 cut(s)	133, 168, 186, 213, 241, 283
BstMAI	GTCTC	2 cut(s)	73, 257
BstMBI	GATC	6 cut(s)	130, 165, 183, 210, 238, 280
BstPAI	GACNNNNGTC	1 cut(s)	416
BstUI	CGCG	1 cut(s)	66
BstV2I	GAAGAC	2 cut(s)	83, 285
BstX2I	RGATCY	2 cut(s)	130, 238
BstYI	RGATCY	2 cut(s)	130, 238
BtsCI	GGATG	2 cut(s)	445, 469
Cac8I	GCNNGC	3 cut(s)	64, 391, 405
Cfr13I	GGNCC	1 cut(s)	31
CseI	GACGC	1 cut(s)	55
CviAII	CATG	2 cut(s)	35, 317
CviJI	RGCY	8 cut(s)	55, 99, 254, 315, 354, 377, 393, 407
CviKI_1	RGCY	8 cut(s)	55, 99, 254, 315, 354, 377, 393, 407
DdeI	CTNAG	4 cut(s)	180, 250, 378, 414
DpnI	GATC	6 cut(s)	132, 167, 185, 212, 240, 282
DpnII	GATC	6 cut(s)	130, 165, 183, 210, 238, 280
DraIII	CACNNNGTG	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	469
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	2 cut(s)	38, 320
FaiI	YATR	2 cut(s)	36, 318
FalI	AAGNNNNNCTT	2 cut(s)	83, 115
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	2 cut(s)	34, 316
FauI	CCCGC	1 cut(s)	150
FokI	GGATG	2 cut(s)	452, 476
HgaI	GACGC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	38, 320
HindIII	AAGCTT	1 cut(s)	391
HinfI	GANTC	4 cut(s)	155, 220, 299, 412
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	273, 303
Hpy188I	TCNGA	8 cut(s)	87, 127, 165, 181, 225, 280, 298, 411
Hpy188III	TCNNGA	3 cut(s)	200, 208, 461
Hpy8I	GTNNAC	2 cut(s)	273, 303
Hpy99I	CGWCG	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	82, 494
HpyCH4V	TGCA	1 cut(s)	467
HpyF3I	CTNAG	4 cut(s)	180, 250, 378, 414
Hsp92II	CATG	2 cut(s)	38, 320
Kzo9I	GATC	6 cut(s)	130, 165, 183, 210, 238, 280
LguI	GCTCTTC	1 cut(s)	89
LpnPI	CCDG	5 cut(s)	245, 249, 401, 417, 446
LweI	GCATC	3 cut(s)	430, 454, 466
MalI	GATC	6 cut(s)	132, 167, 185, 212, 240, 282
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	6 cut(s)	130, 165, 183, 210, 238, 280
MboII	GAAGA	7 cut(s)	88, 100, 103, 106, 108, 140, 285
MflI	RGATCY	2 cut(s)	130, 238
MlyI	GAGTC	3 cut(s)	229, 308, 406
MnlI	CCTC	6 cut(s)	54, 57, 184, 331, 373, 481
Mph1103I	ATGCAT	1 cut(s)	469
MseI	TTAA	1 cut(s)	422
MslI	CAYNNNNRTG	1 cut(s)	462
MvnI	CGCG	1 cut(s)	66
NdeII	GATC	6 cut(s)	130, 165, 183, 210, 238, 280
NlaIII	CATG	2 cut(s)	38, 320
NsiI	ATGCAT	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	155
PflFI	GACNNNGTC	1 cut(s)	191
PleI	GAGTC	3 cut(s)	228, 307, 406
PpsI	GAGTC	3 cut(s)	228, 307, 406
PshAI	GACNNNNGTC	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	31
PsuI	RGATCY	2 cut(s)	130, 238
PsyI	GACNNNGTC	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	422
Sau3AI	GATC	6 cut(s)	130, 165, 183, 210, 238, 280
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	3 cut(s)	229, 308, 406
SetI	ASST	9 cut(s)	57, 101, 195, 256, 269, 384, 395, 409, 420
SfaNI	GCATC	3 cut(s)	430, 454, 466
SinI	GGWCC	1 cut(s)	31
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SsiI	CCGC	2 cut(s)	60, 143
TaaI	ACNGT	2 cut(s)	82, 494
TaqI	TCGA	2 cut(s)	186, 207
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TspGWI	ACGGA	1 cut(s)	279
Tth111I	GACNNNGTC	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.