Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011555

Physical Location & Seq

Genomic Coordinates Forward (+)

49620223 .. 49622011

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGATGAAGGAGTACCAAACGCCACACAAGGACCATGCCCGACCTCCTCCCAAGCTCTCCAATCGCCTATCCAAGAAGACCGTTCCCAAGAAGAGCTTGAACACTGCGTTTTCTTCAATCTCCGAAGATGTGCAAGTCGAGAACTCCAAGCACTCCCTGGATTCCACTCCGATTTCTGTGATTTCTCAGATCGATGAGGTCAATCGCGATGCGGAGATCTCCGAGCGTGCACCTTTAGTAGTTACTGAGAAAATGCCTGAAAGAGAAAGATATAAGATATTTGATACTGTTGTTTGGCTTAAACAGCCTTCCGAGTTGCAGGTGTTGCTCAAGTGTTGCTGTTGTAAAGCTTTTTATGCATTCATAATGTGTGCACTTTTGAGTCTGATGACCCTGCCAGATCCAGCTCTCTCAGATTCAACAGAGAGCTTGTTTACCTCTGATCTCTCTCCATCTTCAGAGTCCACTATTGATAAGAGTGATTCAAGCCATGACTCTTGGAGTGTTGCTAAATGTGAAATTGGTAGCTCAAAGTTTGGTTCGATGGGGGCTGAGGTTGTAGCAAGCTTTCTCAAGCAAGCTCGGACTCAGATCTTGAACTCTGCTGGTGTGGATGCTAAATCCAAGAAGATTCTGGATGCACTGGTTGAGATTGTGATAGAGGATTTCCACACTGTGCCTGAAGAGAAGGACCAGATTGCTAAACTTCTTTCAGCAAAAGCCAAAATGCTAGTTGTGTGTCTCTTGCTATGGATCCTTGCAATGGCTGTGTTTTTGGTGTTCGGCTCTGGATCCCGAAGCACATTTCGTGGACCACTGCCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

30.36

Weight (kDa)

6.54

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011555)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20060 FvH4_4g20280 FvH4_4g20350
malus_domestica	MD13G1151000.v1.1 MD16G1151500.v1.1
prunus_persica	Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1
pyrus_communis	pycom13g12980
rosa_chinensis	RchiOBHm_Chr4g0425771
rosa_laevigata	RLG00000007341
rosa_multiflora	Rmu_sc0002094.1_g000006
rosa_roxburghii	Rroxscaffold_5G00367760
rosa_rugosa	Rorug04G0206100
rosa_samantha	Rh4AG263100 Rh4BG269100 Rh4CG281400 Rh4DG265400
rosa_wichuraiana	Rw4G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	310
Acc36I	ACCTGC	1 cut(s)	310
AccII	CGCG	1 cut(s)	207
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	5 cut(s)	395, 748, 761, 786, 799
AcuI	CTGAAG	2 cut(s)	441, 702
AdeI	CACNNNGTG	1 cut(s)	676
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	1 cut(s)	763
AgsI	TTSAA	5 cut(s)	100, 117, 420, 486, 598
AjnI	CCWGG	1 cut(s)	156
AluBI	AGCT	8 cut(s)	55, 96, 350, 407, 429, 528, 567, 581
AluI	AGCT	8 cut(s)	55, 96, 350, 407, 429, 528, 567, 581
Alw21I	GWGCWC	2 cut(s)	232, 376
Alw26I	GTCTC	1 cut(s)	746
Alw44I	GTGCAC	2 cut(s)	228, 372
AlwI	GGATC	5 cut(s)	395, 748, 761, 786, 799
ApaLI	GTGCAC	2 cut(s)	228, 372
AspS9I	GGNCC	3 cut(s)	31, 691, 812
AvaII	GGWCC	3 cut(s)	31, 691, 812
BaeGI	GKGCMC	2 cut(s)	232, 376
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BamHI	GGATCC	2 cut(s)	753, 791
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	2 cut(s)	232, 376
BbvCI	CCTCAGC	1 cut(s)	552
BccI	CCATC	2 cut(s)	460, 538
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	746
BfaI	CTAG	1 cut(s)	731
BfuAI	ACCTGC	1 cut(s)	310
BglII	AGATCT	2 cut(s)	216, 591
Bme1390I	CCNGG	1 cut(s)	158
Bme18I	GGWCC	3 cut(s)	31, 691, 812
BmgT120I	GGNCC	3 cut(s)	31, 691, 812
BmiI	GGNNCC	2 cut(s)	755, 793
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	3 cut(s)	199, 604, 628
BpiI	GAAGAC	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	314, 557
Bsa29I	ATCGAT	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
Bse1I	ACTGG	1 cut(s)	648
Bse3DI	GCAATG	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	158
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	2 cut(s)	619, 643
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	5 cut(s)	200, 237, 426, 543, 602
BseNI	ACTGG	1 cut(s)	648
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	2 cut(s)	232, 376
Bsh1236I	CGCG	1 cut(s)	207
BshVI	ATCGAT	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	232, 376
BslI	CCNNNNNNNGG	1 cut(s)	763
BsmAI	GTCTC	1 cut(s)	746
BsmI	GAATGC	1 cut(s)	359
Bsp1286I	GDGCHC	2 cut(s)	232, 376
Bsp143I	GATC	7 cut(s)	189, 216, 400, 442, 591, 753, 791
Bsp68I	TCGCGA	1 cut(s)	207
BspACI	CCGC	1 cut(s)	212
BspCNI	CTCAG	5 cut(s)	199, 238, 425, 544, 601
BspDI	ATCGAT	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	755, 793
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	5 cut(s)	395, 748, 761, 786, 799
BspQI	GCTCTTC	1 cut(s)	86
BsrDI	GCAATG	1 cut(s)	768
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	7 cut(s)	189, 216, 400, 442, 591, 753, 791
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	3 cut(s)	82, 289, 676
Bst6I	CTCTTC	2 cut(s)	86, 678
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstC8I	GCNNGC	3 cut(s)	228, 565, 579
BstDEI	CTNAG	5 cut(s)	186, 246, 412, 552, 588
BstF5I	GGATG	2 cut(s)	619, 643
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	7 cut(s)	192, 219, 403, 445, 594, 756, 794
BstMAI	GTCTC	1 cut(s)	746
BstMBI	GATC	7 cut(s)	189, 216, 400, 442, 591, 753, 791
BstMWI	GCNNNNNNNGC	3 cut(s)	304, 325, 356
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstSLI	GKGCMC	2 cut(s)	232, 376
BstUI	CGCG	1 cut(s)	207
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	5 cut(s)	216, 400, 591, 753, 791
BstYI	RGATCY	5 cut(s)	216, 400, 591, 753, 791
Bsu15I	ATCGAT	1 cut(s)	192
BsuTUI	ATCGAT	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	619, 643
BtsI	GCAGTG	2 cut(s)	102, 815
BtsIMutI	CAGTG	4 cut(s)	102, 641, 672, 815
BtuMI	TCGCGA	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	3 cut(s)	228, 565, 579
Cfr13I	GGNCC	3 cut(s)	31, 691, 812
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	35, 491
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	5 cut(s)	186, 246, 412, 552, 588
DpnI	GATC	7 cut(s)	191, 218, 402, 444, 593, 755, 793
DpnII	GATC	7 cut(s)	189, 216, 400, 442, 591, 753, 791
DraIII	CACNNNGTG	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	86, 678
EarI	CTCTTC	2 cut(s)	86, 678
Eco47I	GGWCC	3 cut(s)	31, 691, 812
Eco57I	CTGAAG	2 cut(s)	441, 702
EcoRII	CCWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	361
FaeI	CATG	2 cut(s)	38, 494
FaiI	YATR	6 cut(s)	36, 273, 357, 365, 492, 751
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	2 cut(s)	34, 490
FokI	GGATG	2 cut(s)	626, 650
FspBI	CTAG	1 cut(s)	731
Hin1II	CATG	2 cut(s)	38, 494
HindIII	AAGCTT	2 cut(s)	348, 565
HinfI	GANTC	8 cut(s)	161, 382, 416, 461, 482, 494, 586, 631
Hpy166II	GTNNAC	5 cut(s)	230, 374, 435, 465, 812
Hpy188III	TCNNGA	6 cut(s)	139, 206, 595, 635, 789, 795
Hpy8I	GTNNAC	5 cut(s)	230, 374, 435, 465, 812
HpyAV	CCTTC	2 cut(s)	318, 682
HpyCH4III	ACNGT	3 cut(s)	82, 289, 676
HpyCH4V	TGCA	7 cut(s)	133, 230, 319, 359, 374, 641, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	304, 325, 356
HpyF3I	CTNAG	5 cut(s)	186, 246, 412, 552, 588
Hsp92II	CATG	2 cut(s)	38, 494
Kzo9I	GATC	7 cut(s)	189, 216, 400, 442, 591, 753, 791
LguI	GCTCTTC	1 cut(s)	86
LweI	GCATC	3 cut(s)	199, 604, 628
MaeI	CTAG	1 cut(s)	731
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	7 cut(s)	191, 218, 402, 444, 593, 755, 793
MboI	GATC	7 cut(s)	189, 216, 400, 442, 591, 753, 791
MboII	GAAGA	7 cut(s)	88, 103, 105, 137, 447, 640, 695
MflI	RGATCY	5 cut(s)	216, 400, 591, 753, 791
MhlI	GDGCHC	2 cut(s)	232, 376
MluCI	AATT	1 cut(s)	519
MlyI	GAGTC	4 cut(s)	391, 470, 488, 580
MnlI	CCTC	6 cut(s)	54, 57, 190, 448, 547, 655
Mph1103I	ATGCAT	1 cut(s)	361
MseI	TTAA	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	304, 325, 356
NdeII	GATC	7 cut(s)	189, 216, 400, 442, 591, 753, 791
NlaIII	CATG	2 cut(s)	38, 494
NlaIV	GGNNCC	2 cut(s)	755, 793
NruI	TCGCGA	1 cut(s)	207
NsiI	ATGCAT	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	359
PfeI	GAWTC	4 cut(s)	161, 416, 482, 631
PleI	GAGTC	4 cut(s)	390, 469, 488, 580
PpsI	GAGTC	4 cut(s)	390, 469, 488, 580
Psp6I	CCWGG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	2 cut(s)	755, 793
PspPI	GGNCC	3 cut(s)	31, 691, 812
PsuI	RGATCY	5 cut(s)	216, 400, 591, 753, 791
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	300
Sau3AI	GATC	7 cut(s)	189, 216, 400, 442, 591, 753, 791
Sau96I	GGNCC	3 cut(s)	31, 691, 812
SchI	GAGTC	4 cut(s)	391, 470, 488, 580
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	2 cut(s)	232, 376
SfaNI	GCATC	3 cut(s)	199, 604, 628
SinI	GGWCC	3 cut(s)	31, 691, 812
SmlI	CTYRAG	2 cut(s)	329, 572
SmoI	CTYRAG	2 cut(s)	329, 572
Sse9I	AATT	1 cut(s)	519
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	1 cut(s)	731
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	82, 289, 676
TaqI	TCGA	3 cut(s)	138, 192, 542
TasI	AATT	1 cut(s)	519
TfiI	GAWTC	4 cut(s)	161, 416, 482, 631
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	4 cut(s)	109, 648, 679, 822
TspDTI	ATGAA	2 cut(s)	20, 352
TspRI	CASTG	4 cut(s)	109, 648, 679, 822
VneI	GTGCAC	2 cut(s)	228, 372
VpaK11BI	GGWCC	3 cut(s)	31, 691, 812
XcmI	CCANNNNNNNNNTGG	2 cut(s)	154, 631
XspI	CTAG	1 cut(s)	731
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.