Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011555

Physical Location & Seq

Genomic Coordinates Reverse (-)

23603904 .. 23605849

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g20280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGATGAGAGAGTTCCAAACCCCACACAAGGACCATGCTCGACCTCCTCCCAAGCTCTCCGCTCGCGTCTCCAAGAAGACCGTTCCCAAGAAGAGCTTGAACTCTGCGTTTTCTTCAATCTGTGAAGATCTGCAAGTCCAGCACTCGGTGGATTCCACTCCGATCTTTGTGATTTCTGAGATCGACGAGGTCAATCGCGATGCCGAGGTCACCGAGAGTCTCATGACCCTGCCAGATCCATCTCTCTCAGCTTCAACAGAGACCTTGTTCACCTCTGATCTCTCTCCATCTTTAGAGTCCACGATTTCAAGCCATGCCTCTTGGAGTGTTGCTAAATGTGAAAATGATGGCTCAAAGTGTGGTTCTATCGGGGCTGAGGTTGTATCAAGCTTTCTCAAGCAAGCTCGGACTCAGGTCTTAAACTCTGCTGGTGTGGATGCCAAATCCAAGAAGCTTCTGGATGCATTGGTTGAGATAGTGATACAGGATTTCCACACTGTGCCTGAAGAGAGGGACCGGATTGCTGAACTTTCAGCAAAAGCTAAAATACTGGTTGTGTGTTCTTTGCTATGGATCCTTGCAATGGCTGTGTATATGGTGTTCAGCTCTGGAGCACAAAGCAATCTTCCTGGACCACTGCCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.27

Weight (kDa)

5.55

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011555)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20060 FvH4_4g20280 FvH4_4g20350
malus_domestica	MD13G1151000.v1.1 MD16G1151500.v1.1
prunus_persica	Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1
pyrus_communis	pycom13g12980
rosa_chinensis	RchiOBHm_Chr4g0425771
rosa_laevigata	RLG00000007341
rosa_multiflora	Rmu_sc0002094.1_g000006
rosa_roxburghii	Rroxscaffold_5G00367760
rosa_rugosa	Rorug04G0206100
rosa_samantha	Rh4AG263100 Rh4BG269100 Rh4CG281400 Rh4DG265400
rosa_wichuraiana	Rw4G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	62
AccII	CGCG	2 cut(s)	66, 198
AciI	CCGC	1 cut(s)	60
AclWI	GGATC	3 cut(s)	230, 568, 581
AcuI	CTGAAG	1 cut(s)	525
AdeI	CACNNNGTG	2 cut(s)	148, 499
AfiI	CCNNNNNNNGG	3 cut(s)	28, 145, 583
AgsI	TTSAA	4 cut(s)	100, 117, 255, 309
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	8 cut(s)	55, 96, 251, 390, 404, 454, 542, 606
AluI	AGCT	8 cut(s)	55, 96, 251, 390, 404, 454, 542, 606
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	3 cut(s)	73, 224, 254
AlwI	GGATC	3 cut(s)	230, 568, 581
AspS9I	GGNCC	3 cut(s)	31, 514, 632
AsuHPI	GGTGA	2 cut(s)	202, 262
AvaII	GGWCC	3 cut(s)	31, 514, 632
BamHI	GGATCC	1 cut(s)	573
BbsI	GAAGAC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	616
BbvCI	CCTCAGC	1 cut(s)	375
BccI	CCATC	3 cut(s)	247, 295, 341
BciT130I	CCWGG	1 cut(s)	630
BcoDI	GTCTC	3 cut(s)	73, 224, 254
BglII	AGATCT	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	630
Bme18I	GGWCC	3 cut(s)	31, 514, 632
BmgT120I	GGNCC	3 cut(s)	31, 514, 632
BmiI	GGNNCC	2 cut(s)	515, 575
BmrFI	CCNGG	1 cut(s)	630
BmsI	GCATC	3 cut(s)	190, 427, 451
BoxI	GACNNNNGTC	1 cut(s)	413
BpiI	GAAGAC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	630
Bpu10I	CCTNAGC	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	380
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 145, 583
Bse1I	ACTGG	1 cut(s)	555
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	2 cut(s)	442, 466
BseLI	CCNNNNNNNGG	3 cut(s)	28, 145, 583
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	4 cut(s)	168, 261, 366, 425
BseNI	ACTGG	1 cut(s)	555
BseRI	GAGGAG	1 cut(s)	36
Bsh1236I	CGCG	2 cut(s)	66, 198
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	517
BslFI	GGGAC	1 cut(s)	527
BslI	CCNNNNNNNGG	3 cut(s)	28, 145, 583
BsmAI	GTCTC	3 cut(s)	73, 224, 254
BsmBI	CGTCTC	1 cut(s)	73
BsmFI	GGGAC	1 cut(s)	527
Bso31I	GGTCTC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	6 cut(s)	127, 162, 180, 235, 277, 573
Bsp68I	TCGCGA	1 cut(s)	198
BspACI	CCGC	1 cut(s)	60
BspCNI	CTCAG	4 cut(s)	169, 260, 367, 424
BspFNI	CGCG	2 cut(s)	66, 198
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	515, 575
BspPI	GGATC	3 cut(s)	230, 568, 581
BspQI	GCTCTTC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	62
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	555
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	6 cut(s)	127, 162, 180, 235, 277, 573
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	2 cut(s)	82, 499
Bst6I	CTCTTC	2 cut(s)	86, 501
BstC8I	GCNNGC	2 cut(s)	64, 402
BstDEI	CTNAG	4 cut(s)	177, 247, 375, 411
BstEII	GGTNACC	1 cut(s)	208
BstF5I	GGATG	2 cut(s)	442, 466
BstFNI	CGCG	2 cut(s)	66, 198
BstKTI	GATC	6 cut(s)	130, 165, 183, 238, 280, 576
BstMAI	GTCTC	3 cut(s)	73, 224, 254
BstMBI	GATC	6 cut(s)	127, 162, 180, 235, 277, 573
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	630
BstPAI	GACNNNNGTC	1 cut(s)	413
BstPI	GGTNACC	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	628
BstUI	CGCG	2 cut(s)	66, 198
BstV2I	GAAGAC	1 cut(s)	83
BstX2I	RGATCY	3 cut(s)	127, 235, 573
BstYI	RGATCY	3 cut(s)	127, 235, 573
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	442, 466
BtsI	GCAGTG	1 cut(s)	635
BtsIMutI	CAGTG	2 cut(s)	495, 635
BtuMI	TCGCGA	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	64, 402
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	3 cut(s)	31, 514, 632
CseI	GACGC	1 cut(s)	55
CviAII	CATG	3 cut(s)	35, 223, 314
DdeI	CTNAG	4 cut(s)	177, 247, 375, 411
DpnI	GATC	6 cut(s)	129, 164, 182, 237, 279, 575
DpnII	GATC	6 cut(s)	127, 162, 180, 235, 277, 573
DraIII	CACNNNGTG	2 cut(s)	148, 499
Eam1104I	CTCTTC	2 cut(s)	86, 501
EarI	CTCTTC	2 cut(s)	86, 501
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	3 cut(s)	31, 514, 632
Eco57I	CTGAAG	1 cut(s)	525
Eco91I	GGTNACC	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	628
EcoT22I	ATGCAT	1 cut(s)	466
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	3 cut(s)	38, 226, 317
FaiI	YATR	6 cut(s)	36, 224, 315, 571, 594, 596
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	3 cut(s)	34, 222, 313
FokI	GGATG	2 cut(s)	449, 473
GsuI	CTGGAG	1 cut(s)	630
HapII	CCGG	1 cut(s)	517
HgaI	GACGC	1 cut(s)	55
Hin1II	CATG	3 cut(s)	38, 226, 317
HindIII	AAGCTT	2 cut(s)	388, 452
HinfI	GANTC	4 cut(s)	152, 217, 296, 409
HpaII	CCGG	1 cut(s)	517
HphI	GGTGA	2 cut(s)	202, 262
Hpy166II	GTNNAC	2 cut(s)	270, 300
Hpy188I	TCNGA	4 cut(s)	162, 178, 277, 408
Hpy188III	TCNNGA	4 cut(s)	197, 223, 458, 609
Hpy8I	GTNNAC	2 cut(s)	270, 300
Hpy99I	CGWCG	1 cut(s)	188
HpyCH4III	ACNGT	2 cut(s)	82, 499
HpyCH4V	TGCA	3 cut(s)	133, 464, 581
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	4 cut(s)	177, 247, 375, 411
Hsp92II	CATG	3 cut(s)	38, 226, 317
Kzo9I	GATC	6 cut(s)	127, 162, 180, 235, 277, 573
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	611
LweI	GCATC	3 cut(s)	190, 427, 451
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	6 cut(s)	129, 164, 182, 237, 279, 575
MbiI	CCGCTC	1 cut(s)	62
MboI	GATC	6 cut(s)	127, 162, 180, 235, 277, 573
MboII	GAAGA	6 cut(s)	88, 103, 105, 137, 518, 617
MflI	RGATCY	3 cut(s)	127, 235, 573
MhlI	GDGCHC	1 cut(s)	616
MlyI	GAGTC	3 cut(s)	226, 305, 403
MnlI	CCTC	8 cut(s)	54, 57, 181, 199, 283, 328, 370, 504
Mph1103I	ATGCAT	1 cut(s)	466
MseI	TTAA	1 cut(s)	419
MspI	CCGG	1 cut(s)	517
MspR9I	CCNGG	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	2 cut(s)	66, 198
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	6 cut(s)	127, 162, 180, 235, 277, 573
NlaIII	CATG	3 cut(s)	38, 226, 317
NlaIV	GGNNCC	2 cut(s)	515, 575
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	1 cut(s)	208
NruI	TCGCGA	1 cut(s)	198
NsiI	ATGCAT	1 cut(s)	466
PagI	TCATGA	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	152
PflFI	GACNNNGTC	1 cut(s)	188
PfoI	TCCNGGA	1 cut(s)	628
PleI	GAGTC	3 cut(s)	225, 304, 403
PpsI	GAGTC	3 cut(s)	225, 304, 403
PshAI	GACNNNNGTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	628
PspEI	GGTNACC	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	2 cut(s)	515, 575
PspPI	GGNCC	3 cut(s)	31, 514, 632
PsrI	GAACNNNNNNTAC	2 cut(s)	584, 616
PsuI	RGATCY	3 cut(s)	127, 235, 573
PsyI	GACNNNGTC	1 cut(s)	188
RruI	TCGCGA	1 cut(s)	198
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	419
Sau3AI	GATC	6 cut(s)	127, 162, 180, 235, 277, 573
Sau96I	GGNCC	3 cut(s)	31, 514, 632
SchI	GAGTC	3 cut(s)	226, 305, 403
ScrFI	CCNGG	1 cut(s)	630
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	3 cut(s)	190, 427, 451
SinI	GGWCC	3 cut(s)	31, 514, 632
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SsiI	CCGC	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	82, 499
TaqI	TCGA	2 cut(s)	40, 183
TfiI	GAWTC	1 cut(s)	152
Tru1I	TTAA	1 cut(s)	419
Tru9I	TTAA	1 cut(s)	419
TscAI	CASTG	2 cut(s)	502, 642
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspRI	CASTG	2 cut(s)	502, 642
Tth111I	GACNNNGTC	1 cut(s)	188
VpaK11BI	GGWCC	3 cut(s)	31, 514, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	454
Zsp2I	ATGCAT	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.