Rw4G022710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0011555
Physical Location & Seq
Forward (+)
48199380 .. 48201087
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022710.1

Sequence Viewer

Length: 465 bp
ATGATGAAGGAGTACCAAACGCCACACAAGGACCATGCCCGACCTCCTCCCAAGCTCTCCAATCGCCTTTCCAAGAAGACCGTTCCCAAGAAGAGCTTGAACACTGCGTTTTCTTCAATCTCCGAAGATGTGCAAGTCGAGACCTCCAAGCACTCGCTGGATTCCACTCCGATTTCTGTGATTTCTCAGATCGATGAGGTCAATTGCAAGGCGGAGATCTCCGAGAGTCTGATGACCTTGCCAGATCCAGCTCTCTCAGATTCAACAGAGAGCTTGTTTACCTCTGATCTCTCTCCATCTTCAGAGTCCACTATTGATAAGAGCGATTCAAGCCATGACTCTTGGAGTGTTGCTAAATGTGAAATTGGTAGCTCTAAGTTTGGTTCGATGGGGGCTGAGGTTGTAGCAAGCTTTCTCAAGCAAGCTCAGGACTCAGATCTTGAACTCTGCTGGTGTGGATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.72

Weight (kDa)

4.91

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 285
AfaI GTAC 1 cut(s) 14
AgsI TTSAA 5 cut(s) 100, 117, 264, 330, 443
AluBI AGCT 7 cut(s) 55, 96, 251, 273, 372, 411, 425
AluI AGCT 7 cut(s) 55, 96, 251, 273, 372, 411, 425
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 31
AvaII GGWCC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 396
BccI CCATC 2 cut(s) 304, 382
BcoDI GTCTC 1 cut(s) 134
BglII AGATCT 2 cut(s) 216, 436
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmsI GCATC 1 cut(s) 449
BpiI GAAGAC 1 cut(s) 83
Bpu10I CCTNAGC 2 cut(s) 396, 426
BpuEI CTTGAG 1 cut(s) 401
Bsa29I ATCGAT 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 134
BseCI ATCGAT 1 cut(s) 192
BseGI GGATG 1 cut(s) 464
BseMII CTCAG 5 cut(s) 200, 270, 387, 440, 447
BseRI GAGGAG 1 cut(s) 36
BshVI ATCGAT 1 cut(s) 192
BsmAI GTCTC 1 cut(s) 134
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 5 cut(s) 189, 216, 244, 286, 436
BspACI CCGC 1 cut(s) 212
BspCNI CTCAG 5 cut(s) 199, 269, 388, 439, 446
BspDI ATCGAT 1 cut(s) 192
BspPI GGATC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 134
BssMI GATC 5 cut(s) 189, 216, 244, 286, 436
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 409, 423
BstDEI CTNAG 6 cut(s) 186, 256, 375, 396, 426, 433
BstF5I GGATG 1 cut(s) 464
BstKTI GATC 5 cut(s) 192, 219, 247, 289, 439
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 5 cut(s) 189, 216, 244, 286, 436
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 3 cut(s) 216, 244, 436
BstYI RGATCY 3 cut(s) 216, 244, 436
Bsu15I ATCGAT 1 cut(s) 192
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 1 cut(s) 464
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 409, 423
Cfr13I GGNCC 1 cut(s) 31
ClaI ATCGAT 1 cut(s) 192
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 35, 335
CviJI RGCY 9 cut(s) 55, 96, 251, 273, 333, 372, 395, 411, 425
CviKI_1 RGCY 9 cut(s) 55, 96, 251, 273, 333, 372, 395, 411, 425
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 6 cut(s) 186, 256, 375, 396, 426, 433
DpnI GATC 5 cut(s) 191, 218, 246, 288, 438
DpnII GATC 5 cut(s) 189, 216, 244, 286, 436
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 227
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 31
Eco57I CTGAAG 1 cut(s) 285
FaeI CATG 2 cut(s) 38, 338
FaiI YATR 2 cut(s) 36, 336
FalI AAGNNNNNCTT 2 cut(s) 80, 112
FatI CATG 2 cut(s) 34, 334
Hin1II CATG 2 cut(s) 38, 338
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 7 cut(s) 161, 226, 260, 305, 326, 338, 431
Hpy166II GTNNAC 2 cut(s) 279, 309
Hpy188I TCNGA 9 cut(s) 124, 171, 189, 223, 231, 259, 286, 304, 436
Hpy188III TCNNGA 3 cut(s) 139, 428, 440
Hpy8I GTNNAC 2 cut(s) 279, 309
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 2 cut(s) 133, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 6 cut(s) 186, 256, 375, 396, 426, 433
Hsp92II CATG 2 cut(s) 38, 338
Kzo9I GATC 5 cut(s) 189, 216, 244, 286, 436
LguI GCTCTTC 1 cut(s) 86
LpnPI CCDG 5 cut(s) 143, 255, 261, 413, 436
LweI GCATC 1 cut(s) 449
MalI GATC 5 cut(s) 191, 218, 246, 288, 438
MboI GATC 5 cut(s) 189, 216, 244, 286, 436
MboII GAAGA 5 cut(s) 88, 103, 105, 137, 291
MfeI CAATTG 1 cut(s) 202
MflI RGATCY 3 cut(s) 216, 244, 436
MluCI AATT 2 cut(s) 202, 363
MlyI GAGTC 4 cut(s) 235, 314, 332, 425
MnlI CCTC 6 cut(s) 54, 57, 154, 190, 292, 391
MunI CAATTG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 330
NdeII GATC 5 cut(s) 189, 216, 244, 286, 436
NlaIII CATG 2 cut(s) 38, 338
PciSI GCTCTTC 1 cut(s) 86
PfeI GAWTC 3 cut(s) 161, 260, 326
PleI GAGTC 4 cut(s) 234, 313, 332, 425
PpsI GAGTC 4 cut(s) 234, 313, 332, 425
PspPI GGNCC 1 cut(s) 31
PsuI RGATCY 3 cut(s) 216, 244, 436
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 86
Sau3AI GATC 5 cut(s) 189, 216, 244, 286, 436
Sau96I GGNCC 1 cut(s) 31
SchI GAGTC 4 cut(s) 235, 314, 332, 425
SfaNI GCATC 1 cut(s) 449
SinI GGWCC 1 cut(s) 31
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 2 cut(s) 202, 363
SsiI CCGC 1 cut(s) 212
TaaI ACNGT 1 cut(s) 82
TaqI TCGA 3 cut(s) 138, 192, 386
TasI AATT 2 cut(s) 202, 363
TfiI GAWTC 3 cut(s) 161, 260, 326
TscAI CASTG 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 20
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 31
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.