Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011555

Physical Location & Seq

Genomic Coordinates Reverse (-)

9115731 .. 9120071

Gene Structure 4341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G115200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGAGAAAACCAAACACCACTCAAGGATCAAGCGCGACCTTCAAAGCTCGCGAATCGCGTATCCAAGAAGAATATTCCAAAGAAGAGCTTAAACACTGTTTTTTCCTCAGTTTCCGAAGATGTAACAGTGGACACTTCAAACAATTCTCTGGATTCTACTCCAGTTTCTGAGATTTCCGAGGTCAATGATGATGGAGACATCACCGCGAGTCTGATGCTGGTGCCAGATCAAGCTCTCTCAGCTTCATCAGAGACTTCCTTCTCCTCTGATCTCATTCCGTCTCCACAGGCCAGTGTTGATAAGGACGAACCAGACCATGTCTCTCTGAGTATTGGAAAATCAAGCGAATACGTTGCCTCAAACTTTGGTTCTGTGGAGGCTGAGATTGTAGCGGGCTTTCTCAGGGAAGCTCGGACTCAGGTCTCGAATGCCGGCTTGGATACCAAATCTAAGAAGCTTCTGGATGCACTGCTTGAGATTGTCATAGAGGACTTCCACACTTTGCCTGTAAAGAGGGACCGGGCTGCAGAGCTTCTGTCAGCAAAAACTTACATAGTGATAGTATGTTTCTTGCTCTGGATCATTGCATTAGGTGTATTGATGTTCAGCTCTGGAGGCCGAAGCAATTTTCGTGGACCTCTGCCTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

23.42

Weight (kDa)

4.93

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011555)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20060 FvH4_4g20280 FvH4_4g20350
malus_domestica	MD13G1151000.v1.1 MD16G1151500.v1.1
prunus_persica	Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1 Prupe.1G115200_v2.0.a1
pyrus_communis	pycom13g12980
rosa_chinensis	RchiOBHm_Chr4g0425771
rosa_laevigata	RLG00000007341
rosa_multiflora	Rmu_sc0002094.1_g000006
rosa_roxburghii	Rroxscaffold_5G00367760
rosa_rugosa	Rorug04G0206100
rosa_samantha	Rh4AG263100 Rh4BG269100 Rh4CG281400 Rh4DG265400
rosa_wichuraiana	Rw4G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AccII	CGCG	4 cut(s)	37, 53, 60, 209
AciI	CCGC	2 cut(s)	207, 395
AclWI	GGATC	2 cut(s)	36, 590
AgsI	TTSAA	2 cut(s)	45, 141
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	8 cut(s)	49, 90, 236, 245, 413, 460, 535, 612
AluI	AGCT	8 cut(s)	49, 90, 236, 245, 413, 460, 535, 612
Alw26I	GTCTC	5 cut(s)	192, 248, 288, 328, 430
AlwI	GGATC	2 cut(s)	36, 590
AlwNI	CAGNNNCTG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	291, 619
ApeKI	GCWGC	1 cut(s)	527
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	2 cut(s)	520, 638
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	520, 638
BanI	GGYRCC	1 cut(s)	223
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	1 cut(s)	188
BcgI	CGANNNNNNTGC	4 cut(s)	199, 233, 338, 372
BciVI	GTATCC	2 cut(s)	73, 436
BcnI	CCSGG	1 cut(s)	524
BcoDI	GTCTC	5 cut(s)	192, 248, 288, 328, 430
BfmI	CTRYAG	1 cut(s)	528
BfuI	GTATCC	2 cut(s)	73, 436
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	1 cut(s)	524
Bme18I	GGWCC	2 cut(s)	520, 638
BmgT120I	GGNCC	2 cut(s)	520, 638
BmiI	GGNNCC	2 cut(s)	225, 521
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	2 cut(s)	207, 457
BoxI	GACNNNNGTC	1 cut(s)	422
BpmI	CTGGAG	2 cut(s)	147, 636
BpuEI	CTTGAG	2 cut(s)	8, 497
BpuMI	CCSGG	1 cut(s)	524
BsaI	GGTCTC	1 cut(s)	430
BsaJI	CCNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	164, 294
Bse3DI	GCAATG	1 cut(s)	585
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	472
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	7 cut(s)	123, 162, 255, 320, 375, 418, 434
BseNI	ACTGG	2 cut(s)	164, 294
BseRI	GAGGAG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	514
Bsh1236I	CGCG	4 cut(s)	37, 53, 60, 209
BshFI	GGCC	2 cut(s)	293, 621
BshNI	GGYRCC	1 cut(s)	223
BsiSI	CCGG	2 cut(s)	435, 523
BslFI	GGGAC	1 cut(s)	533
BsmAI	GTCTC	5 cut(s)	192, 248, 288, 328, 430
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	2 cut(s)	293, 621
Bso31I	GGTCTC	1 cut(s)	430
Bsp143I	GATC	4 cut(s)	28, 229, 271, 582
Bsp68I	TCGCGA	1 cut(s)	53
BspACI	CCGC	2 cut(s)	207, 395
BspANI	GGCC	2 cut(s)	293, 621
BspCNI	CTCAG	7 cut(s)	122, 163, 254, 321, 376, 417, 433
BspFNI	CGCG	4 cut(s)	37, 53, 60, 209
BspLI	GGNNCC	2 cut(s)	225, 521
BspMAI	CTGCAG	1 cut(s)	532
BspPI	GGATC	2 cut(s)	36, 590
BspQI	GCTCTTC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	223
BspTNI	GGTCTC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	585
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	2 cut(s)	164, 294
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	4 cut(s)	28, 229, 271, 582
Bst4CI	ACNGT	2 cut(s)	100, 130
Bst6I	CTCTTC	1 cut(s)	80
BstC8I	GCNNGC	3 cut(s)	51, 397, 436
BstDEI	CTNAG	8 cut(s)	109, 171, 241, 329, 384, 404, 420, 453
BstF5I	GGATG	1 cut(s)	472
BstFNI	CGCG	4 cut(s)	37, 53, 60, 209
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	4 cut(s)	31, 232, 274, 585
BstMAI	GTCTC	5 cut(s)	192, 248, 288, 328, 430
BstMBI	GATC	4 cut(s)	28, 229, 271, 582
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 618
BstPAI	GACNNNNGTC	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	522
BstSFI	CTRYAG	1 cut(s)	528
BstUI	CGCG	4 cut(s)	37, 53, 60, 209
BstV1I	GCAGC	1 cut(s)	514
BsuI	GTATCC	2 cut(s)	73, 436
BsuRI	GGCC	2 cut(s)	293, 621
BtsCI	GGATG	1 cut(s)	472
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	4 cut(s)	96, 135, 301, 470
BtuMI	TCGCGA	1 cut(s)	53
Cac8I	GCNNGC	3 cut(s)	51, 397, 436
CaiI	CAGNNNCTG	1 cut(s)	170
CfoI	GCGC	1 cut(s)	37
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	520, 638
CspCI	CAANNNNNGTGG	2 cut(s)	616, 651
CviAII	CATG	1 cut(s)	320
DdeI	CTNAG	8 cut(s)	109, 171, 241, 329, 384, 404, 420, 453
DpnI	GATC	4 cut(s)	30, 231, 273, 584
DpnII	GATC	4 cut(s)	28, 229, 271, 582
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco31I	GGTCTC	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	520, 638
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	1 cut(s)	323
FaiI	YATR	4 cut(s)	321, 488, 557, 568
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	1 cut(s)	319
FauI	CCCGC	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	1 cut(s)	528
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	528
GsuI	CTGGAG	2 cut(s)	147, 636
HaeIII	GGCC	2 cut(s)	293, 621
HapII	CCGG	2 cut(s)	435, 523
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	323
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	4 cut(s)	55, 155, 211, 418
HpaII	CCGG	2 cut(s)	435, 523
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	133, 638
Hpy188I	TCNGA	8 cut(s)	118, 172, 181, 216, 253, 271, 330, 417
Hpy188III	TCNNGA	6 cut(s)	52, 152, 427, 464, 580, 615
Hpy8I	GTNNAC	2 cut(s)	133, 638
HpyAV	CCTTC	2 cut(s)	51, 271
HpyCH4III	ACNGT	2 cut(s)	100, 130
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	3 cut(s)	470, 530, 590
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 618
HpyF3I	CTNAG	8 cut(s)	109, 171, 241, 329, 384, 404, 420, 453
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	1 cut(s)	323
HspAI	GCGC	1 cut(s)	35
KroI	GCCGGC	1 cut(s)	434
KroNI	GCCGGC	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	28, 229, 271, 582
LguI	GCTCTTC	1 cut(s)	80
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	2 cut(s)	207, 457
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	4 cut(s)	30, 231, 273, 584
MboI	GATC	4 cut(s)	28, 229, 271, 582
MboII	GAAGA	3 cut(s)	82, 97, 131
MluCI	AATT	2 cut(s)	145, 628
MlyI	GAGTC	2 cut(s)	220, 412
MnlI	CCTC	9 cut(s)	118, 175, 277, 370, 373, 484, 510, 611, 651
MroNI	GCCGGC	1 cut(s)	434
MseI	TTAA	1 cut(s)	92
MspI	CCGG	2 cut(s)	435, 523
MspR9I	CCNGG	1 cut(s)	524
Mva1269I	GAATGC	1 cut(s)	436
MvnI	CGCG	4 cut(s)	37, 53, 60, 209
MwoI	GCNNNNNNNGC	2 cut(s)	242, 618
NaeI	GCCGGC	1 cut(s)	436
NciI	CCSGG	1 cut(s)	524
NdeII	GATC	4 cut(s)	28, 229, 271, 582
NgoMIV	GCCGGC	1 cut(s)	434
NlaIII	CATG	1 cut(s)	323
NlaIV	GGNNCC	2 cut(s)	225, 521
NruI	TCGCGA	1 cut(s)	53
PciSI	GCTCTTC	1 cut(s)	80
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	436
PdiI	GCCGGC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	55, 155
PflFI	GACNNNGTC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	529
PleI	GAGTC	2 cut(s)	219, 412
PpsI	GAGTC	2 cut(s)	219, 412
PshAI	GACNNNNGTC	1 cut(s)	422
PspN4I	GGNNCC	2 cut(s)	225, 521
PspPI	GGNCC	2 cut(s)	520, 638
PstI	CTGCAG	1 cut(s)	532
PstNI	CAGNNNCTG	1 cut(s)	170
PsyI	GACNNNGTC	1 cut(s)	320
RruI	TCGCGA	1 cut(s)	53
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	4 cut(s)	28, 229, 271, 582
Sau96I	GGNCC	2 cut(s)	520, 638
SchI	GAGTC	2 cut(s)	220, 412
ScrFI	CCNGG	1 cut(s)	524
SfaNI	GCATC	2 cut(s)	207, 457
SfcI	CTRYAG	1 cut(s)	528
SinI	GGWCC	2 cut(s)	520, 638
SmlI	CTYRAG	2 cut(s)	23, 476
SmoI	CTYRAG	2 cut(s)	23, 476
Sse9I	AATT	2 cut(s)	145, 628
SsiI	CCGC	2 cut(s)	207, 395
SspI	AATATT	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	100, 130
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	428
TasI	AATT	2 cut(s)	145, 628
TfiI	GAWTC	2 cut(s)	55, 155
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	4 cut(s)	103, 135, 301, 477
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	1 cut(s)	237
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	4 cut(s)	103, 135, 301, 477
Tth111I	GACNNNGTC	1 cut(s)	320
VpaK11BI	GGWCC	2 cut(s)	520, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.