FvH4_4g20951

Ubiquitin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017872
Physical Location & Seq
Forward (+)
24083783 .. 24084467
685 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20951.t1

Sequence Viewer

Length: 438 bp
ATGCAAATTTTCGTGAAAACTCTGACCGGGAAGACCATCACTATTGAGGTCGAGAGTAGTGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCTCCAGATCAACAGAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGCAGAACTCTTGCGGATTACAACATCCAAAAGGAGTCGACTCTTCACCTGGTGTTGAGGCTCAGGGGAGGAACTATGTTCAAGATGAAGAGTACTCTCACCGGGGAAGAAATTGAGATTGATATTCAACTGACTGATGACCCAATGAAGGAAAGGGTTGAACAGAGAGAGAAGATTATTCCTCCGTTGCAACAAAGGCTGAAGGTGCTTTTTTTTGGTCTGGACGGGATGAAGAAATTCTACAGTAGAATAATACGAACTCAAGGATGGCCCAGTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

146

Amino Acids

16.73

Weight (kDa)

8.83

Isoelectric Point (pI)

39.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 71 4.9e-18 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 74 1.6e-32 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017872)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g20951
rosa_chinensis RchiOBHm_Chr2g0161521 RchiOBHm_Chr3g0478151
rosa_multiflora Rmu_sc0007744.1_g000001
rosa_roxburghii Rroxscaffold_1G00053410
rosa_samantha Rh3AG215300 Rh3BG248900 Rh5AG180600 Rh5BG179200
rosa_wichuraiana Rw2G046050 Rw3G019570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 194
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 2 cut(s) 6, 392
AcuI CTGAAG 1 cut(s) 377
AdeI CACNNNGTG 1 cut(s) 208
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 304
AgsI TTSAA 3 cut(s) 238, 284, 317
AjnI CCWGG 2 cut(s) 90, 204
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 127
AoxI GGCC 1 cut(s) 425
ApoI RAATTY 2 cut(s) 6, 392
Asp700I GAANNNNTTC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 426
AsuC2I CCSGG 2 cut(s) 28, 259
AsuHPI GGTGA 2 cut(s) 194, 247
BarI GAAGNNNNNNTAC 2 cut(s) 380, 412
BbsI GAAGAC 1 cut(s) 38
BccI CCATC 4 cut(s) 44, 74, 149, 417
BciT130I CCWGG 2 cut(s) 92, 206
BcnI CCSGG 2 cut(s) 28, 259
BcoDI GTCTC 1 cut(s) 118
BfmI CTRYAG 1 cut(s) 397
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 4 cut(s) 28, 92, 206, 259
BmgT120I GGNCC 1 cut(s) 426
BmrFI CCNGG 4 cut(s) 28, 92, 206, 259
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 402
BpuMI CCSGG 2 cut(s) 28, 259
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse1I ACTGG 2 cut(s) 153, 429
BseBI CCWGG 2 cut(s) 92, 206
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 4 cut(s) 105, 180, 390, 428
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMII CTCAG 1 cut(s) 232
BseNI ACTGG 2 cut(s) 153, 429
BshFI GGCC 1 cut(s) 427
BsiSI CCGG 2 cut(s) 27, 258
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 118
BsnI GGCC 1 cut(s) 427
Bsp143I GATC 3 cut(s) 87, 115, 129
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 427
BspCNI CTCAG 1 cut(s) 231
BspPI GGATC 1 cut(s) 82
BsrI ACTGG 2 cut(s) 153, 429
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 3 cut(s) 87, 115, 129
Bst2UI CCWGG 2 cut(s) 92, 206
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 2 cut(s) 204, 239
BstC8I GCNNGC 2 cut(s) 139, 143
BstDEI CTNAG 1 cut(s) 218
BstF5I GGATG 4 cut(s) 105, 180, 390, 428
BstKTI GATC 3 cut(s) 90, 118, 132
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 3 cut(s) 87, 115, 129
BstMWI GCNNNNNNNGC 2 cut(s) 352, 361
BstNI CCWGG 2 cut(s) 92, 206
BstSCI CCNGG 4 cut(s) 26, 90, 204, 257
BstSFI CTRYAG 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuRI GGCC 1 cut(s) 427
BtsCI GGATG 4 cut(s) 105, 180, 390, 428
Cac8I GCNNGC 2 cut(s) 139, 143
CaiI CAGNNNCTG 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 426
CsiI ACCWGGT 1 cut(s) 204
Csp6I GTAC 1 cut(s) 249
CviJI RGCY 4 cut(s) 83, 217, 355, 427
CviKI_1 RGCY 4 cut(s) 83, 217, 355, 427
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 218
DpnI GATC 3 cut(s) 89, 117, 131
DpnII GATC 3 cut(s) 87, 115, 129
DraIII CACNNNGTG 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 204, 239
EarI CTCTTC 2 cut(s) 204, 239
Eco57I CTGAAG 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 90, 204
FaiI YATR 1 cut(s) 233
FblI GTMKAC 1 cut(s) 194
FokI GGATG 3 cut(s) 92, 167, 397
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 1 cut(s) 427
HapII CCGG 2 cut(s) 27, 258
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 2 cut(s) 191, 196
HpaII CCGG 2 cut(s) 27, 258
HphI GGTGA 2 cut(s) 194, 247
Hpy166II GTNNAC 1 cut(s) 195
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 5 cut(s) 13, 52, 113, 238, 377
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 3 cut(s) 95, 298, 352
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 2 cut(s) 4, 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 361
HpyF3I CTNAG 1 cut(s) 218
Kzo9I GATC 3 cut(s) 87, 115, 129
LweI GCATC 1 cut(s) 114
MabI ACCWGGT 1 cut(s) 204
MalI GATC 3 cut(s) 89, 117, 131
MboI GATC 3 cut(s) 87, 115, 129
MboII GAAGA 7 cut(s) 43, 164, 191, 256, 275, 340, 400
MflI RGATCY 1 cut(s) 87
MluCI AATT 3 cut(s) 6, 267, 392
MlyI GAGTC 2 cut(s) 190, 200
MnlI CCTC 5 cut(s) 40, 120, 207, 218, 348
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 1 cut(s) 436
MspI CCGG 2 cut(s) 27, 258
MspR9I CCNGG 4 cut(s) 28, 92, 206, 259
MvaI CCWGG 2 cut(s) 92, 206
MwoI GCNNNNNNNGC 2 cut(s) 352, 361
NciI CCSGG 2 cut(s) 28, 259
NdeII GATC 3 cut(s) 87, 115, 129
PdmI GAANNNNTTC 1 cut(s) 392
PflFI GACNNNGTC 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 90
PleI GAGTC 2 cut(s) 190, 199
PpsI GAGTC 2 cut(s) 190, 199
Psp6I CCWGG 2 cut(s) 90, 204
PspGI CCWGG 2 cut(s) 90, 204
PspPI GGNCC 1 cut(s) 426
PstNI CAGNNNCTG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 87
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SalI GTCGAC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 436
Sau3AI GATC 3 cut(s) 87, 115, 129
Sau96I GGNCC 1 cut(s) 426
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 2 cut(s) 190, 200
ScrFI CCNGG 4 cut(s) 28, 92, 206, 259
SetI ASST 3 cut(s) 51, 207, 363
SexAI ACCWGGT 1 cut(s) 204
SfaNI GCATC 1 cut(s) 114
SfcI CTRYAG 1 cut(s) 397
SmlI CTYRAG 1 cut(s) 417
SmoI CTYRAG 1 cut(s) 417
Sse9I AATT 3 cut(s) 6, 267, 392
SsiI CCGC 1 cut(s) 170
StyD4I CCNGG 4 cut(s) 26, 90, 204, 257
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 3 cut(s) 51, 69, 194
TasI AATT 3 cut(s) 6, 267, 392
TatI WGTACW 1 cut(s) 248
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 257, 317, 401
TspGWI ACGGA 1 cut(s) 330
Tth111I GACNNNGTC 1 cut(s) 74
XapI RAATTY 2 cut(s) 6, 392
XmiI GTMKAC 1 cut(s) 194
XmnI GAANNNNTTC 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.