Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0017872

Physical Location & Seq

Genomic Coordinates Forward (+)

22522267 .. 22526524

Gene Structure 4258 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G019570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCAGAATTTCGTGAAGACTCTAACTGGTAAGACCATCACTCTCGAGGTTGAGAGCAGCGACACCATCGATAATGTCAAGGCCAAGATCCAGAGATTGATTTTTGCCGTCACTCTTCACCTGGTTTTGAGGCTATGGGGAGGAACTATGATTAAGGTGAAGACTCTTACCGGGAAAGAAATTGAGATTGATATTGAACCGACTGACACCATTAACCGAATCAAGGAAAGGGTTGAGGAGAAAGAGGGAATTCCTCCGGTGCAACAAAGCAGCTTGGAGATGACAAAACTGCTAGACTACAACATTGAGGGTGGCTCTGTCCTTCATTTAGTGCTTGCACTACGTGGTGGTAGCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009692 GO:0009693 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043412 GO:0043449 GO:0043450 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045116 GO:0050896 GO:0051603 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ubiquitin

Protein Analysis

119

Amino Acids

13.27

Weight (kDa)

6.12

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	4 - 32	7.5e-07	Ubiquitin family
ubiquitin	PF00240	51 - 89	2.6e-10	Ubiquitin family
Rad60-SLD	PF11976	51 - 92	1e-05	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017872)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20951
rosa_chinensis	RchiOBHm_Chr2g0161521 RchiOBHm_Chr3g0478151
rosa_multiflora	Rmu_sc0007744.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053410
rosa_samantha	Rh3AG215300 Rh3BG248900 Rh5AG180600 Rh5BG179200
rosa_wichuraiana	Rw2G046050 Rw3G019570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	7, 249
AdeI	CACNNNGTG	1 cut(s)	344
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	1 cut(s)	273
AluI	AGCT	1 cut(s)	273
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	2 cut(s)	57, 270
ApoI	RAATTY	2 cut(s)	7, 249
AsuC2I	CCSGG	1 cut(s)	172
AsuHPI	GGTGA	2 cut(s)	110, 169
AvaI	CYCGRG	1 cut(s)	44
BbsI	GAAGAC	2 cut(s)	23, 167
BbvI	GCAGC	2 cut(s)	69, 282
BccI	CCATC	2 cut(s)	44, 74
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	172
BfaI	CTAG	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	356
BisI	GCNGC	2 cut(s)	58, 271
BlsI	GCNGC	2 cut(s)	59, 272
Bme1390I	CCNGG	2 cut(s)	122, 172
BmeT110I	CYCGRG	1 cut(s)	44
BmrFI	CCNGG	2 cut(s)	122, 172
BpiI	GAAGAC	2 cut(s)	23, 167
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpuMI	CCSGG	1 cut(s)	172
Bsa29I	ATCGAT	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	2 cut(s)	69, 282
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	69
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	171, 257
BslI	CCNNNNNNNGG	1 cut(s)	223
BsnI	GGCC	1 cut(s)	83
BsoBI	CYCGRG	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	87
BspANI	GGCC	1 cut(s)	83
BspDI	ATCGAT	1 cut(s)	69
BspPI	GGATC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	120
BstBAI	YACGTR	1 cut(s)	344
BstC8I	GCNNGC	1 cut(s)	336
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	2 cut(s)	120, 170
BstSFI	CTRYAG	1 cut(s)	356
BstV1I	GCAGC	2 cut(s)	69, 282
BstV2I	GAAGAC	2 cut(s)	23, 167
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu15I	ATCGAT	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	336
ClaI	ATCGAT	1 cut(s)	69
CsiI	ACCWGGT	1 cut(s)	120
CviJI	RGCY	5 cut(s)	83, 133, 273, 315, 354
CviKI_1	RGCY	5 cut(s)	83, 133, 273, 315, 354
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
DraIII	CACNNNGTG	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	120
FaiI	YATR	3 cut(s)	136, 149, 358
Fnu4HI	GCNGC	2 cut(s)	58, 271
Fsp4HI	GCNGC	2 cut(s)	58, 271
FspBI	CTAG	1 cut(s)	293
GluI	GCNGC	2 cut(s)	58, 271
HaeIII	GGCC	1 cut(s)	83
HapII	CCGG	2 cut(s)	171, 257
HinfI	GANTC	3 cut(s)	19, 163, 219
HpaII	CCGG	2 cut(s)	171, 257
HphI	GGTGA	2 cut(s)	110, 169
Hpy188III	TCNNGA	3 cut(s)	13, 44, 91
HpyAV	CCTTC	1 cut(s)	332
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	3 cut(s)	4, 262, 338
HpySE526I	ACGT	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	87
LpnPI	CCDG	6 cut(s)	12, 104, 107, 134, 184, 270
Lsp1109I	GCAGC	2 cut(s)	69, 282
MabI	ACCWGGT	1 cut(s)	120
MaeI	CTAG	1 cut(s)	293
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	3 cut(s)	28, 107, 172
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	3 cut(s)	7, 180, 249
MlyI	GAGTC	2 cut(s)	13, 157
MnlI	CCTC	7 cut(s)	40, 123, 134, 229, 238, 264, 301
MseI	TTAA	2 cut(s)	153, 213
MspI	CCGG	2 cut(s)	171, 257
MspR9I	CCNGG	2 cut(s)	122, 172
MvaI	CCWGG	1 cut(s)	122
NciI	CCSGG	1 cut(s)	172
NdeII	GATC	1 cut(s)	87
NmuCI	GTSAC	1 cut(s)	109
PaeR7I	CTCGAG	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	59, 272
PleI	GAGTC	2 cut(s)	13, 157
PpsI	GAGTC	2 cut(s)	13, 157
Ppu21I	YACGTR	1 cut(s)	344
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	153, 213
SatI	GCNGC	2 cut(s)	58, 271
Sau3AI	GATC	1 cut(s)	87
SchI	GAGTC	2 cut(s)	13, 157
ScrFI	CCNGG	2 cut(s)	122, 172
SetI	ASST	5 cut(s)	51, 123, 159, 275, 346
SexAI	ACCWGGT	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	356
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	3 cut(s)	7, 180, 249
SspMI	CTAG	1 cut(s)	293
StyD4I	CCNGG	2 cut(s)	120, 170
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	45, 69
TasI	AATT	3 cut(s)	7, 180, 249
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	2 cut(s)	153, 213
Tru9I	TTAA	2 cut(s)	153, 213
TseFI	GTSAC	1 cut(s)	109
TseI	GCWGC	2 cut(s)	57, 270
Tsp45I	GTSAC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	314
XapI	RAATTY	2 cut(s)	7, 249
XhoI	CTCGAG	1 cut(s)	44
XspI	CTAG	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.