Ubiquitin-like domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g20951 |
| rosa_chinensis | RchiOBHm_Chr2g0161521 RchiOBHm_Chr3g0478151 |
| rosa_multiflora | Rmu_sc0007744.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00053410 |
| rosa_samantha | Rh3AG215300 Rh3BG248900 Rh5AG180600 Rh5BG179200 |
| rosa_wichuraiana | Rw2G046050 Rw3G019570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 414 |
| AclWI | GGATC | 2 cut(s) | 319, 548 |
| AcsI | RAATTY | 2 cut(s) | 4, 169 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 264, 334, 537, 544 |
| AgsI | TTSAA | 3 cut(s) | 284, 506, 518 |
| AjnI | CCWGG | 1 cut(s) | 327 |
| Alw26I | GTCTC | 2 cut(s) | 203, 355 |
| AlwI | GGATC | 2 cut(s) | 319, 548 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 364 |
| AoxI | GGCC | 1 cut(s) | 113 |
| ApeKI | GCWGC | 2 cut(s) | 294, 583 |
| ApoI | RAATTY | 2 cut(s) | 4, 169 |
| AspS9I | GGNCC | 1 cut(s) | 114 |
| AsuC2I | CCSGG | 2 cut(s) | 265, 493 |
| AsuHPI | GGTGA | 3 cut(s) | 41, 268, 490 |
| BbsI | GAAGAC | 2 cut(s) | 275, 488 |
| BbvI | GCAGC | 2 cut(s) | 306, 595 |
| BccI | CCATC | 3 cut(s) | 281, 311, 386 |
| BciT130I | CCWGG | 1 cut(s) | 329 |
| BclI | TGATCA | 1 cut(s) | 352 |
| BcnI | CCSGG | 2 cut(s) | 265, 493 |
| BcoDI | GTCTC | 2 cut(s) | 203, 355 |
| BisI | GCNGC | 2 cut(s) | 295, 584 |
| BlsI | GCNGC | 2 cut(s) | 296, 585 |
| Bme1390I | CCNGG | 3 cut(s) | 265, 329, 493 |
| BmgT120I | GGNCC | 1 cut(s) | 114 |
| BmrFI | CCNGG | 3 cut(s) | 265, 329, 493 |
| BmsI | GCATC | 2 cut(s) | 228, 351 |
| BpiI | GAAGAC | 2 cut(s) | 275, 488 |
| BpmI | CTGGAG | 1 cut(s) | 561 |
| BpuMI | CCSGG | 2 cut(s) | 265, 493 |
| BsaI | GGTCTC | 1 cut(s) | 203 |
| BsaWI | WCCGGW | 1 cut(s) | 537 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 264, 334, 537, 544 |
| Bse1I | ACTGG | 1 cut(s) | 578 |
| BseBI | CCWGG | 1 cut(s) | 329 |
| BseGI | GGATG | 1 cut(s) | 342 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 264, 334, 537, 544 |
| BseMII | CTCAG | 1 cut(s) | 198 |
| BseNI | ACTGG | 1 cut(s) | 578 |
| BseRI | GAGGAG | 1 cut(s) | 572 |
| BseXI | GCAGC | 2 cut(s) | 306, 595 |
| BseYI | CCCAGC | 1 cut(s) | 162 |
| BsgI | GTGCAG | 1 cut(s) | 602 |
| BshFI | GGCC | 1 cut(s) | 115 |
| BsiSI | CCGG | 3 cut(s) | 264, 492, 538 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 264, 334, 537, 544 |
| BsmAI | GTCTC | 2 cut(s) | 203, 355 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| BsmI | GAATGC | 1 cut(s) | 570 |
| BsnI | GGCC | 1 cut(s) | 115 |
| Bso31I | GGTCTC | 1 cut(s) | 203 |
| Bsp143I | GATC | 3 cut(s) | 324, 352, 540 |
| BspANI | GGCC | 1 cut(s) | 115 |
| BspCNI | CTCAG | 1 cut(s) | 199 |
| BspPI | GGATC | 2 cut(s) | 319, 548 |
| BspTNI | GGTCTC | 1 cut(s) | 203 |
| BsrI | ACTGG | 1 cut(s) | 578 |
| BssMI | GATC | 3 cut(s) | 324, 352, 540 |
| Bst2UI | CCWGG | 1 cut(s) | 329 |
| BstDEI | CTNAG | 1 cut(s) | 207 |
| BstF5I | GGATG | 1 cut(s) | 342 |
| BstKTI | GATC | 3 cut(s) | 327, 355, 543 |
| BstMAI | GTCTC | 2 cut(s) | 203, 355 |
| BstMBI | GATC | 3 cut(s) | 324, 352, 540 |
| BstNI | CCWGG | 1 cut(s) | 329 |
| BstSCI | CCNGG | 3 cut(s) | 263, 327, 491 |
| BstV1I | GCAGC | 2 cut(s) | 306, 595 |
| BstV2I | GAAGAC | 2 cut(s) | 275, 488 |
| BstX2I | RGATCY | 1 cut(s) | 324 |
| BstYI | RGATCY | 1 cut(s) | 324 |
| BsuRI | GGCC | 1 cut(s) | 115 |
| BtsCI | GGATG | 1 cut(s) | 342 |
| BtsIMutI | CAGTG | 1 cut(s) | 585 |
| CaiI | CAGNNNCTG | 1 cut(s) | 364 |
| Cfr13I | GGNCC | 1 cut(s) | 114 |
| CviJI | RGCY | 3 cut(s) | 109, 115, 320 |
| CviKI_1 | RGCY | 3 cut(s) | 109, 115, 320 |
| DdeI | CTNAG | 1 cut(s) | 207 |
| DpnI | GATC | 3 cut(s) | 326, 354, 542 |
| DpnII | GATC | 3 cut(s) | 324, 352, 540 |
| Eco31I | GGTCTC | 1 cut(s) | 203 |
| EcoRI | GAATTC | 1 cut(s) | 4 |
| EcoRII | CCWGG | 1 cut(s) | 327 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FbaI | TGATCA | 1 cut(s) | 352 |
| Fnu4HI | GCNGC | 2 cut(s) | 295, 584 |
| FokI | GGATG | 1 cut(s) | 329 |
| Fsp4HI | GCNGC | 2 cut(s) | 295, 584 |
| GluI | GCNGC | 2 cut(s) | 295, 584 |
| GsaI | CCCAGC | 1 cut(s) | 166 |
| GsuI | CTGGAG | 1 cut(s) | 561 |
| HaeIII | GGCC | 1 cut(s) | 115 |
| HapII | CCGG | 3 cut(s) | 264, 492, 538 |
| HincII | GTYRAC | 1 cut(s) | 432 |
| HindII | GTYRAC | 1 cut(s) | 432 |
| HinfI | GANTC | 4 cut(s) | 78, 428, 484, 552 |
| HpaII | CCGG | 3 cut(s) | 264, 492, 538 |
| HphI | GGTGA | 3 cut(s) | 41, 268, 490 |
| Hpy166II | GTNNAC | 1 cut(s) | 432 |
| Hpy188I | TCNGA | 2 cut(s) | 83, 208 |
| Hpy188III | TCNNGA | 2 cut(s) | 250, 350 |
| Hpy8I | GTNNAC | 1 cut(s) | 432 |
| HpyAV | CCTTC | 1 cut(s) | 332 |
| HpyCH4IV | ACGT | 1 cut(s) | 41 |
| HpyCH4V | TGCA | 3 cut(s) | 241, 407, 583 |
| HpyF3I | CTNAG | 1 cut(s) | 207 |
| HpySE526I | ACGT | 1 cut(s) | 41 |
| Ksp22I | TGATCA | 1 cut(s) | 352 |
| Kzo9I | GATC | 3 cut(s) | 324, 352, 540 |
| LpnPI | CCDG | 9 cut(s) | 176, 277, 314, 341, 360, 363, 505, 551, 591 |
| Lsp1109I | GCAGC | 2 cut(s) | 306, 595 |
| LweI | GCATC | 2 cut(s) | 228, 351 |
| MaeII | ACGT | 1 cut(s) | 41 |
| MalI | GATC | 3 cut(s) | 326, 354, 542 |
| MboI | GATC | 3 cut(s) | 324, 352, 540 |
| MboII | GAAGA | 3 cut(s) | 280, 401, 493 |
| MfeI | CAATTG | 1 cut(s) | 383 |
| MflI | RGATCY | 1 cut(s) | 324 |
| MluCI | AATT | 6 cut(s) | 4, 33, 169, 383, 501, 507 |
| MlyI | GAGTC | 3 cut(s) | 437, 478, 561 |
| MnlI | CCTC | 7 cut(s) | 357, 444, 450, 455, 550, 559, 585 |
| MseI | TTAA | 3 cut(s) | 36, 120, 474 |
| MspI | CCGG | 3 cut(s) | 264, 492, 538 |
| MspR9I | CCNGG | 3 cut(s) | 265, 329, 493 |
| MunI | CAATTG | 1 cut(s) | 383 |
| Mva1269I | GAATGC | 1 cut(s) | 570 |
| MvaI | CCWGG | 1 cut(s) | 329 |
| NciI | CCSGG | 2 cut(s) | 265, 493 |
| NdeII | GATC | 3 cut(s) | 324, 352, 540 |
| PctI | GAATGC | 1 cut(s) | 570 |
| PfeI | GAWTC | 1 cut(s) | 78 |
| PflFI | GACNNNGTC | 1 cut(s) | 311 |
| PfoI | TCCNGGA | 1 cut(s) | 327 |
| PkrI | GCNGC | 2 cut(s) | 296, 585 |
| PleI | GAGTC | 3 cut(s) | 436, 478, 560 |
| PpsI | GAGTC | 3 cut(s) | 436, 478, 560 |
| PsiI | TTATAA | 1 cut(s) | 414 |
| Psp6I | CCWGG | 1 cut(s) | 327 |
| PspFI | CCCAGC | 1 cut(s) | 162 |
| PspGI | CCWGG | 1 cut(s) | 327 |
| PspPI | GGNCC | 1 cut(s) | 114 |
| PstNI | CAGNNNCTG | 1 cut(s) | 364 |
| PsuI | RGATCY | 1 cut(s) | 324 |
| PsyI | GACNNNGTC | 1 cut(s) | 311 |
| SaqAI | TTAA | 3 cut(s) | 36, 120, 474 |
| SatI | GCNGC | 2 cut(s) | 295, 584 |
| Sau3AI | GATC | 3 cut(s) | 324, 352, 540 |
| Sau96I | GGNCC | 1 cut(s) | 114 |
| SchI | GAGTC | 3 cut(s) | 437, 478, 561 |
| ScrFI | CCNGG | 3 cut(s) | 265, 329, 493 |
| SetI | ASST | 6 cut(s) | 44, 126, 444, 455, 480, 593 |
| SfaNI | GCATC | 2 cut(s) | 228, 351 |
| Sse9I | AATT | 6 cut(s) | 4, 33, 169, 383, 501, 507 |
| StyD4I | CCNGG | 3 cut(s) | 263, 327, 491 |
| TaiI | ACGT | 1 cut(s) | 44 |
| TaqI | TCGA | 3 cut(s) | 306, 397, 555 |
| TaqII | GACCGA | 1 cut(s) | 227 |
| TasI | AATT | 6 cut(s) | 4, 33, 169, 383, 501, 507 |
| TfiI | GAWTC | 1 cut(s) | 78 |
| Tru1I | TTAA | 3 cut(s) | 36, 120, 474 |
| Tru9I | TTAA | 3 cut(s) | 36, 120, 474 |
| TscAI | CASTG | 1 cut(s) | 585 |
| TseI | GCWGC | 2 cut(s) | 294, 583 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| TspGWI | ACGGA | 1 cut(s) | 155 |
| TspRI | CASTG | 1 cut(s) | 585 |
| Tth111I | GACNNNGTC | 1 cut(s) | 311 |
| XapI | RAATTY | 2 cut(s) | 4, 169 |