Ubiquitin-like domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g20951 |
| rosa_chinensis | RchiOBHm_Chr2g0161521 RchiOBHm_Chr3g0478151 |
| rosa_multiflora | Rmu_sc0007744.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00053410 |
| rosa_samantha | Rh3AG215300 Rh3BG248900 Rh5AG180600 Rh5BG179200 |
| rosa_wichuraiana | Rw2G046050 Rw3G019570 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 186, 386, 419 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 157 |
| AclWI | GGATC | 1 cut(s) | 142 |
| AcsI | RAATTY | 1 cut(s) | 324 |
| AcuI | CTGAAG | 1 cut(s) | 501 |
| AdeI | CACNNNGTG | 1 cut(s) | 626 |
| AfaI | GTAC | 3 cut(s) | 336, 347, 454 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 157 |
| AgsI | TTSAA | 4 cut(s) | 272, 370, 397, 430 |
| AjnI | CCWGG | 1 cut(s) | 195 |
| AlwI | GGATC | 1 cut(s) | 142 |
| Ama87I | CYCGRG | 1 cut(s) | 104 |
| ApeKI | GCWGC | 1 cut(s) | 117 |
| ApoI | RAATTY | 1 cut(s) | 324 |
| AsuHPI | GGTGA | 3 cut(s) | 185, 244, 466 |
| AvaI | CYCGRG | 1 cut(s) | 104 |
| BbsI | GAAGAC | 2 cut(s) | 98, 242 |
| BbvCI | CCTCAGC | 1 cut(s) | 309 |
| BbvI | GCAGC | 1 cut(s) | 129 |
| BccI | CCATC | 3 cut(s) | 104, 134, 158 |
| BciT130I | CCWGG | 1 cut(s) | 197 |
| BfaI | CTAG | 2 cut(s) | 548, 575 |
| BfmI | CTRYAG | 1 cut(s) | 638 |
| BglII | AGATCT | 1 cut(s) | 550 |
| BisI | GCNGC | 1 cut(s) | 118 |
| BlsI | GCNGC | 1 cut(s) | 119 |
| Bme1390I | CCNGG | 1 cut(s) | 197 |
| BmeT110I | CYCGRG | 1 cut(s) | 104 |
| BmrFI | CCNGG | 1 cut(s) | 197 |
| BmrI | ACTGGG | 1 cut(s) | 96 |
| BmuI | ACTGGG | 1 cut(s) | 96 |
| BpiI | GAAGAC | 2 cut(s) | 98, 242 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 581, 613 |
| Bpu10I | CCTNAGC | 1 cut(s) | 309 |
| BpuEI | CTTGAG | 2 cut(s) | 421, 454 |
| Bsa29I | ATCGAT | 1 cut(s) | 129 |
| BsaAI | YACGTR | 1 cut(s) | 626 |
| BsaWI | WCCGGW | 1 cut(s) | 331 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 157 |
| Bse1I | ACTGG | 1 cut(s) | 91 |
| BseBI | CCWGG | 1 cut(s) | 197 |
| BseCI | ATCGAT | 1 cut(s) | 129 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BseMII | CTCAG | 2 cut(s) | 300, 376 |
| BseNI | ACTGG | 1 cut(s) | 91 |
| BseRI | GAGGAG | 1 cut(s) | 326 |
| BseXI | GCAGC | 1 cut(s) | 129 |
| BshVI | ATCGAT | 1 cut(s) | 129 |
| BsiHKCI | CYCGRG | 1 cut(s) | 104 |
| BsiSI | CCGG | 1 cut(s) | 332 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 157 |
| BsoBI | CYCGRG | 1 cut(s) | 104 |
| Bsp143I | GATC | 2 cut(s) | 147, 550 |
| BspCNI | CTCAG | 2 cut(s) | 301, 375 |
| BspDI | ATCGAT | 1 cut(s) | 129 |
| BspPI | GGATC | 1 cut(s) | 142 |
| BsrI | ACTGG | 1 cut(s) | 91 |
| BssMI | GATC | 2 cut(s) | 147, 550 |
| Bst2UI | CCWGG | 1 cut(s) | 197 |
| BstBAI | YACGTR | 1 cut(s) | 626 |
| BstC8I | GCNNGC | 1 cut(s) | 618 |
| BstDEI | CTNAG | 2 cut(s) | 309, 362 |
| BstKTI | GATC | 2 cut(s) | 150, 553 |
| BstMBI | GATC | 2 cut(s) | 147, 550 |
| BstNI | CCWGG | 1 cut(s) | 197 |
| BstNSI | RCATGY | 1 cut(s) | 64 |
| BstSCI | CCNGG | 1 cut(s) | 195 |
| BstSFI | CTRYAG | 1 cut(s) | 638 |
| BstV1I | GCAGC | 1 cut(s) | 129 |
| BstV2I | GAAGAC | 2 cut(s) | 98, 242 |
| BstX2I | RGATCY | 2 cut(s) | 147, 550 |
| BstYI | RGATCY | 2 cut(s) | 147, 550 |
| Bsu15I | ATCGAT | 1 cut(s) | 129 |
| BsuTUI | ATCGAT | 1 cut(s) | 129 |
| Cac8I | GCNNGC | 1 cut(s) | 618 |
| ClaI | ATCGAT | 1 cut(s) | 129 |
| CsiI | ACCWGGT | 1 cut(s) | 195 |
| Csp6I | GTAC | 3 cut(s) | 335, 346, 453 |
| CviAII | CATG | 2 cut(s) | 61, 531 |
| CviJI | RGCY | 6 cut(s) | 143, 208, 504, 526, 597, 636 |
| CviKI_1 | RGCY | 6 cut(s) | 143, 208, 504, 526, 597, 636 |
| CviQI | GTAC | 3 cut(s) | 335, 346, 453 |
| DdeI | CTNAG | 2 cut(s) | 309, 362 |
| DpnI | GATC | 2 cut(s) | 149, 552 |
| DpnII | GATC | 2 cut(s) | 147, 550 |
| DraIII | CACNNNGTG | 1 cut(s) | 626 |
| Eco32I | GATATC | 1 cut(s) | 18 |
| Eco57I | CTGAAG | 1 cut(s) | 501 |
| Eco88I | CYCGRG | 1 cut(s) | 104 |
| EcoRI | GAATTC | 1 cut(s) | 324 |
| EcoRII | CCWGG | 1 cut(s) | 195 |
| EcoRV | GATATC | 1 cut(s) | 18 |
| FaeI | CATG | 2 cut(s) | 64, 534 |
| FatI | CATG | 2 cut(s) | 60, 530 |
| Fnu4HI | GCNGC | 1 cut(s) | 118 |
| Fsp4HI | GCNGC | 1 cut(s) | 118 |
| FspBI | CTAG | 2 cut(s) | 548, 575 |
| GluI | GCNGC | 1 cut(s) | 118 |
| HapII | CCGG | 1 cut(s) | 332 |
| Hin1II | CATG | 2 cut(s) | 64, 534 |
| HinfI | GANTC | 3 cut(s) | 238, 294, 366 |
| HpaII | CCGG | 1 cut(s) | 332 |
| HphI | GGTGA | 3 cut(s) | 185, 244, 466 |
| Hpy188I | TCNGA | 4 cut(s) | 15, 48, 365, 520 |
| Hpy188III | TCNNGA | 3 cut(s) | 73, 104, 247 |
| HpyAV | CCTTC | 2 cut(s) | 368, 614 |
| HpyCH4IV | ACGT | 1 cut(s) | 625 |
| HpyCH4V | TGCA | 3 cut(s) | 64, 179, 620 |
| HpyF3I | CTNAG | 2 cut(s) | 309, 362 |
| HpySE526I | ACGT | 1 cut(s) | 625 |
| Hsp92II | CATG | 2 cut(s) | 64, 534 |
| Kzo9I | GATC | 2 cut(s) | 147, 550 |
| LmnI | GCTCC | 1 cut(s) | 41 |
| LpnPI | CCDG | 7 cut(s) | 72, 164, 182, 209, 345, 397, 430 |
| Lsp1109I | GCAGC | 1 cut(s) | 129 |
| MabI | ACCWGGT | 1 cut(s) | 195 |
| MaeI | CTAG | 2 cut(s) | 548, 575 |
| MaeII | ACGT | 1 cut(s) | 625 |
| MalI | GATC | 2 cut(s) | 149, 552 |
| MboI | GATC | 2 cut(s) | 147, 550 |
| MboII | GAAGA | 3 cut(s) | 103, 173, 247 |
| MfeI | CAATTG | 1 cut(s) | 155 |
| MflI | RGATCY | 2 cut(s) | 147, 550 |
| MluCI | AATT | 3 cut(s) | 155, 255, 324 |
| MlyI | GAGTC | 1 cut(s) | 232 |
| MnlI | CCTC | 6 cut(s) | 100, 198, 209, 304, 339, 583 |
| MseI | TTAA | 2 cut(s) | 228, 288 |
| MspI | CCGG | 1 cut(s) | 332 |
| MspR9I | CCNGG | 1 cut(s) | 197 |
| MunI | CAATTG | 1 cut(s) | 155 |
| MvaI | CCWGG | 1 cut(s) | 197 |
| NdeII | GATC | 2 cut(s) | 147, 550 |
| NlaIII | CATG | 2 cut(s) | 64, 534 |
| NspI | RCATGY | 1 cut(s) | 64 |
| PaeR7I | CTCGAG | 1 cut(s) | 104 |
| PfeI | GAWTC | 2 cut(s) | 294, 366 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 157 |
| PkrI | GCNGC | 1 cut(s) | 119 |
| PleI | GAGTC | 1 cut(s) | 232 |
| PpsI | GAGTC | 1 cut(s) | 232 |
| Ppu21I | YACGTR | 1 cut(s) | 626 |
| PsiI | TTATAA | 3 cut(s) | 186, 386, 419 |
| Psp6I | CCWGG | 1 cut(s) | 195 |
| PspGI | CCWGG | 1 cut(s) | 195 |
| PsuI | RGATCY | 2 cut(s) | 147, 550 |
| RsaI | GTAC | 3 cut(s) | 336, 347, 454 |
| RsaNI | GTAC | 3 cut(s) | 335, 346, 453 |
| SaqAI | TTAA | 2 cut(s) | 228, 288 |
| SatI | GCNGC | 1 cut(s) | 118 |
| Sau3AI | GATC | 2 cut(s) | 147, 550 |
| SchI | GAGTC | 1 cut(s) | 232 |
| ScrFI | CCNGG | 1 cut(s) | 197 |
| SetI | ASST | 5 cut(s) | 111, 198, 234, 347, 628 |
| SexAI | ACCWGGT | 1 cut(s) | 195 |
| SfcI | CTRYAG | 1 cut(s) | 638 |
| Sfr274I | CTCGAG | 1 cut(s) | 104 |
| SlaI | CTCGAG | 1 cut(s) | 104 |
| SmlI | CTYRAG | 3 cut(s) | 104, 400, 433 |
| SmoI | CTYRAG | 3 cut(s) | 104, 400, 433 |
| Sse9I | AATT | 3 cut(s) | 155, 255, 324 |
| SspMI | CTAG | 2 cut(s) | 548, 575 |
| StyD4I | CCNGG | 1 cut(s) | 195 |
| TaiI | ACGT | 1 cut(s) | 628 |
| TaqI | TCGA | 3 cut(s) | 105, 129, 377 |
| TasI | AATT | 3 cut(s) | 155, 255, 324 |
| TatI | WGTACW | 1 cut(s) | 452 |
| TfiI | GAWTC | 2 cut(s) | 294, 366 |
| Tru1I | TTAA | 2 cut(s) | 228, 288 |
| Tru9I | TTAA | 2 cut(s) | 228, 288 |
| TseI | GCWGC | 1 cut(s) | 117 |
| TspGWI | ACGGA | 3 cut(s) | 28, 336, 529 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 157 |
| XapI | RAATTY | 1 cut(s) | 324 |
| XceI | RCATGY | 1 cut(s) | 64 |
| XhoI | CTCGAG | 1 cut(s) | 104 |
| XspI | CTAG | 2 cut(s) | 548, 575 |