FvH4_4g21950

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0016310
Physical Location & Seq
Reverse (-)
24908544 .. 24910480
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21950.t1

Sequence Viewer

Length: 1260 bp
ATGCATAGCTTGGATCTAAGAACAAGAAGAAGAAACCCCAAGATGAATGCTTTGTTCTTGTACCTGAAGAAAAGACCCAAATTGAAGCAATGGGTCTTCATCACAATCGTGTTCTTGGCTGCCTCATCTTTCTTATGGGTCGCAACCTCTCTCCTCCAAAACAGCCATTACACCTCAAACTTGGGTCTCTCAGCTCCATCCTCACTCTCTGATTCAACCCCTTATCACAACTTCAAGCTCTTCTCTGCCGACTTCAAAGACATGATCCAAACCTTCAAGATCTATGTCTACCCAACTAACTCATCTGACTTTGCTCAGATTTTCGATCCCCACCCAAACCCATTTGACCCCAAATTGGGTAACTACTTCAGTGAACACATGTTCAAGCTCTCTCTACTCCAAAGCTCATTCATTACCTCCAACCCTGAAGAAGCCCATCTCTATTTCTTGCCATTTTCGGTTAATCTTCTCCGAAACGACCCCAGGGTCCATTCAGAGGAAGCCATTTCCGACTTTGTGGCGCATTATACTGATGGGATTAGCCAGGAGTTTCCTTTCTGGAATGCCTCAATGGGTTTGGATCATTTCTATGCCTGCTGCCACTCTGTTTGCAGAGAAGCTATGTCGAAACACAATGACTTGCATAACAATGCCATTCAGCTCACTTGCTCGTCTAGCTACTTCCAGAGGTTTTATATTGCCCACAAAGATGTCTCCATGCCTCAAGTCTGGCCTCGGCCGCCTCAGCTGACACTGAATCCCCCGAAATCCAGGGATAAGCTTGTGTTCTTTGCCGGACGGGTTCAAAACTCGAATGTGAGGCAGCAGCTGGTGGATTTATGGGGCAATGATACTCGAATGGACATCTACTCTGAGAATCCGGGGTATCCTTATGAAGAAGGGTTTAAGAGGAGCAAGTATTGCCTCCATGTTAAGGGCTATGAGGTGAACACTGCCAGGGTCAGTGATGCCATACACTATGGGTGTGTGCCTGTTATAATGTCGAATTACTATGAGCTTCCTTTCGCTAATGTGTTGAACTGGACTACATTTTCGGTTATTATTAACCACAATGAGCCTGCTTCGTTGAAGAAGACGCTGCTGTCGATAACAAAGAAGAGTTACCTGAAGATGTACCGGAATTTGTTGGCAGTTAGGAGGCACTTCATTTGGCACAAGACTCCTAAGGGATATGACTCCTTCCATATGACTGCTTATCAGTTGTGGCTCAAAAGAGGGTCGCAGCGTCCATCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

420

Amino Acids

48.88

Weight (kDa)

9.35

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 91 - 367 3.5e-54 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016310)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21950
malus_domestica MD13G1135600.v1.1 MD16G1131200.v1.1
prunus_persica Prupe.1G209700_v2.0.a1
pyrus_communis pycom13g11830
rosa_chinensis RchiOBHm_Chr4g0428151
rosa_laevigata RLG00000007175
rosa_multiflora Rmu_sc0004940.1_g000009 Rmu_sc0009599.1_g000009
rosa_roxburghii Rroxscaffold_5G00369880
rosa_rugosa Rorug04G0223000
rosa_samantha Rh4BG285800 Rh4CG301100 Rh4DG282800
rosa_wichuraiana Rw4G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 998
AasI GACNNNNNNGTC 2 cut(s) 485, 1102
AccI GTMKAC 1 cut(s) 288
AciI CCGC 1 cut(s) 740
AclWI GGATC 4 cut(s) 21, 259, 320, 588
AcoI YGGCCR 1 cut(s) 737
AcsI RAATTY 1 cut(s) 1141
AcuI CTGAAG 4 cut(s) 86, 352, 447, 1148
AfaI GTAC 2 cut(s) 62, 1136
AfiI CCNNNNNNNGG 4 cut(s) 355, 356, 496, 934
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 9 cut(s) 85, 216, 235, 256, 277, 385, 806, 1039, 1090
AjnI CCWGG 4 cut(s) 482, 543, 770, 956
AleI CACNNNNGTG 1 cut(s) 107
Alw26I GTCTC 2 cut(s) 191, 718
AlwI GGATC 4 cut(s) 21, 259, 320, 588
AlwNI CAGNNNCTG 1 cut(s) 829
AoxI GGCC 2 cut(s) 731, 737
ApeKI GCWGC 6 cut(s) 119, 597, 823, 826, 1099, 1243
ApoI RAATTY 1 cut(s) 1141
ArsI GACNNNNNNTTYG 2 cut(s) 1036, 1068
AspLEI GCGC 1 cut(s) 523
AspS9I GGNCC 1 cut(s) 487
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 1 cut(s) 958
AvaII GGWCC 1 cut(s) 487
AxyI CCTNAGG 1 cut(s) 1185
BbsI GAAGAC 2 cut(s) 88, 1100
BbvCI CCTCAGC 1 cut(s) 744
BbvI GCAGC 6 cut(s) 106, 584, 835, 838, 1086, 1255
BccI CCATC 4 cut(s) 205, 444, 527, 1258
BciT130I CCWGG 4 cut(s) 484, 545, 772, 958
BciVI GTATCC 1 cut(s) 897
BcnI CCSGG 1 cut(s) 882
BcoDI GTCTC 2 cut(s) 191, 718
BfaI CTAG 2 cut(s) 675, 1258
BfuI GTATCC 1 cut(s) 897
BglII AGATCT 1 cut(s) 279
BisI GCNGC 7 cut(s) 120, 598, 740, 824, 827, 1100, 1244
BlsI GCNGC 7 cut(s) 121, 599, 741, 825, 828, 1101, 1245
Bme1390I CCNGG 5 cut(s) 484, 545, 772, 882, 958
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 487
BmiI GGNNCC 1 cut(s) 488
BmrFI CCNGG 5 cut(s) 484, 545, 772, 882, 958
BmsI GCATC 1 cut(s) 958
BpiI GAAGAC 2 cut(s) 88, 1100
Bpu10I CCTNAGC 1 cut(s) 744
BpuEI CTTGAG 1 cut(s) 708
BpuMI CCSGG 1 cut(s) 882
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 6 cut(s) 482, 483, 734, 771, 881, 957
BsaWI WCCGGW 1 cut(s) 1137
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 356, 496, 934
Bse1I ACTGG 1 cut(s) 1046
Bse21I CCTNAGG 1 cut(s) 1185
Bse3DI GCAATG 2 cut(s) 95, 853
BseBI CCWGG 4 cut(s) 484, 545, 772, 958
BseDI CCNNGG 6 cut(s) 482, 483, 734, 771, 881, 957
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 4 cut(s) 355, 356, 496, 934
BseMI GCAATG 2 cut(s) 95, 853
BseMII CTCAG 4 cut(s) 204, 329, 758, 864
BseNI ACTGG 1 cut(s) 1046
BseRI GAGGAG 2 cut(s) 143, 925
BseX3I CGGCCG 1 cut(s) 737
BseXI GCAGC 6 cut(s) 106, 584, 835, 838, 1086, 1255
Bsh1285I CGRYCG 1 cut(s) 740
BshFI GGCC 2 cut(s) 733, 739
BsiEI CGRYCG 1 cut(s) 740
BsiSI CCGG 3 cut(s) 795, 881, 1138
BslI CCNNNNNNNGG 4 cut(s) 355, 356, 496, 934
BsmAI GTCTC 2 cut(s) 191, 718
BsmI GAATGC 2 cut(s) 52, 568
BsnI GGCC 2 cut(s) 733, 739
Bso31I GGTCTC 1 cut(s) 191
Bsp143I GATC 5 cut(s) 13, 264, 279, 325, 580
BspACI CCGC 1 cut(s) 740
BspANI GGCC 2 cut(s) 733, 739
BspCNI CTCAG 4 cut(s) 203, 328, 757, 865
BspLI GGNNCC 1 cut(s) 488
BspPI GGATC 4 cut(s) 21, 259, 320, 588
BspQI GCTCTTC 1 cut(s) 245
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 2 cut(s) 95, 853
BsrI ACTGG 1 cut(s) 1046
BssECI CCNNGG 6 cut(s) 482, 483, 734, 771, 881, 957
BssMI GATC 5 cut(s) 13, 264, 279, 325, 580
Bst2UI CCWGG 4 cut(s) 484, 545, 772, 958
Bst6I CTCTTC 2 cut(s) 245, 1112
BstAPI GCANNNNNTGC 1 cut(s) 921
BstC8I GCNNGC 2 cut(s) 595, 1080
BstDEI CTNAG 6 cut(s) 17, 190, 315, 744, 873, 1185
BstF5I GGATG 1 cut(s) 197
BstHHI GCGC 1 cut(s) 523
BstKTI GATC 5 cut(s) 16, 267, 282, 328, 583
BstMAI GTCTC 2 cut(s) 191, 718
BstMBI GATC 5 cut(s) 13, 264, 279, 325, 580
BstMCI CGRYCG 1 cut(s) 740
BstMWI GCNNNNNNNGC 4 cut(s) 675, 739, 745, 921
BstNI CCWGG 4 cut(s) 484, 545, 772, 958
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 5 cut(s) 482, 543, 770, 880, 956
BstV1I GCAGC 6 cut(s) 106, 584, 835, 838, 1086, 1255
BstV2I GAAGAC 2 cut(s) 88, 1100
BstX2I RGATCY 2 cut(s) 13, 279
BstYI RGATCY 2 cut(s) 13, 279
BstZI CGGCCG 1 cut(s) 737
Bsu36I CCTNAGG 1 cut(s) 1185
BsuI GTATCC 1 cut(s) 897
BsuRI GGCC 2 cut(s) 733, 739
BtsCI GGATG 1 cut(s) 197
BtsI GCAGTG 1 cut(s) 951
BtsIMutI CAGTG 4 cut(s) 376, 752, 951, 970
Cac8I GCNNGC 2 cut(s) 595, 1080
CaiI CAGNNNCTG 1 cut(s) 829
CfoI GCGC 1 cut(s) 523
Cfr13I GGNCC 1 cut(s) 487
CseI GACGC 2 cut(s) 1105, 1235
Csp6I GTAC 2 cut(s) 61, 1135
CspCI CAANNNNNGTGG 2 cut(s) 590, 625
CviAII CATG 4 cut(s) 262, 379, 718, 929
CviQI GTAC 2 cut(s) 61, 1135
DdeI CTNAG 6 cut(s) 17, 190, 315, 744, 873, 1185
DpnI GATC 5 cut(s) 15, 266, 281, 327, 582
DpnII GATC 5 cut(s) 13, 264, 279, 325, 580
DrdI GACNNNNNNGTC 2 cut(s) 485, 1102
DseDI GACNNNNNNGTC 2 cut(s) 485, 1102
EaeI YGGCCR 1 cut(s) 737
EagI CGGCCG 1 cut(s) 737
Eam1104I CTCTTC 2 cut(s) 245, 1112
EarI CTCTTC 2 cut(s) 245, 1112
EclXI CGGCCG 1 cut(s) 737
Eco31I GGTCTC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 487
Eco52I CGGCCG 1 cut(s) 737
Eco57I CTGAAG 4 cut(s) 86, 352, 447, 1148
Eco81I CCTNAGG 1 cut(s) 1185
EcoRII CCWGG 4 cut(s) 482, 543, 770, 956
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 265, 382, 721, 932
FatI CATG 4 cut(s) 261, 378, 717, 928
FauNDI CATATG 1 cut(s) 1206
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 7 cut(s) 120, 598, 740, 824, 827, 1100, 1244
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 7 cut(s) 120, 598, 740, 824, 827, 1100, 1244
FspBI CTAG 2 cut(s) 675, 1258
GlaI GCGC 1 cut(s) 522
GluI GCNGC 7 cut(s) 120, 598, 740, 824, 827, 1100, 1244
HaeIII GGCC 2 cut(s) 733, 739
HapII CCGG 3 cut(s) 795, 881, 1138
HgaI GACGC 2 cut(s) 1105, 1235
HhaI GCGC 1 cut(s) 523
Hin1II CATG 4 cut(s) 265, 382, 721, 932
Hin6I GCGC 1 cut(s) 521
HinP1I GCGC 1 cut(s) 521
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 5 cut(s) 212, 757, 877, 1180, 1196
HpaII CCGG 3 cut(s) 795, 881, 1138
HphI GGTGA 1 cut(s) 958
Hpy166II GTNNAC 3 cut(s) 289, 374, 949
Hpy188I TCNGA 7 cut(s) 211, 307, 318, 473, 496, 511, 874
Hpy188III TCNNGA 3 cut(s) 277, 559, 685
Hpy8I GTNNAC 3 cut(s) 289, 374, 949
HpyAV CCTTC 3 cut(s) 283, 893, 1210
HpyCH4V TGCA 3 cut(s) 4, 612, 643
HpyF10VI GCNNNNNNNGC 4 cut(s) 675, 739, 745, 921
HpyF3I CTNAG 6 cut(s) 17, 190, 315, 744, 873, 1185
Hsp92II CATG 4 cut(s) 265, 382, 721, 932
HspAI GCGC 1 cut(s) 521
Kzo9I GATC 5 cut(s) 13, 264, 279, 325, 580
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 2 cut(s) 199, 912
Lsp1109I GCAGC 6 cut(s) 106, 584, 835, 838, 1086, 1255
LweI GCATC 1 cut(s) 958
MaeI CTAG 2 cut(s) 675, 1258
MaeIII GTNAC 2 cut(s) 359, 1121
MalI GATC 5 cut(s) 15, 266, 281, 327, 582
MboI GATC 5 cut(s) 13, 264, 279, 325, 580
MflI RGATCY 2 cut(s) 13, 279
MluCI AATT 4 cut(s) 80, 353, 1006, 1141
MlyI GAGTC 2 cut(s) 1174, 1190
MmeI TCCRAC 2 cut(s) 444, 534
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 462, 906, 933, 1065
MslI CAYNNNNRTG 4 cut(s) 107, 588, 648, 708
MspA1I CMGCKG 2 cut(s) 748, 829
MspI CCGG 3 cut(s) 795, 881, 1138
MspR9I CCNGG 5 cut(s) 484, 545, 772, 882, 958
Mva1269I GAATGC 2 cut(s) 52, 568
MvaI CCWGG 4 cut(s) 484, 545, 772, 958
MwoI GCNNNNNNNGC 4 cut(s) 675, 739, 745, 921
NciI CCSGG 1 cut(s) 882
NdeI CATATG 1 cut(s) 1206
NdeII GATC 5 cut(s) 13, 264, 279, 325, 580
NlaIII CATG 4 cut(s) 265, 382, 721, 932
NlaIV GGNNCC 1 cut(s) 488
NmeAIII GCCGAG 1 cut(s) 715
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 382
OliI CACNNNNGTG 1 cut(s) 107
PasI CCCWGGG 1 cut(s) 483
PciI ACATGT 1 cut(s) 378
PciSI GCTCTTC 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 1103
PctI GAATGC 2 cut(s) 52, 568
PfeI GAWTC 3 cut(s) 212, 757, 877
PkrI GCNGC 7 cut(s) 121, 599, 741, 825, 828, 1101, 1245
PleI GAGTC 2 cut(s) 1174, 1190
PpsI GAGTC 2 cut(s) 1174, 1190
PscI ACATGT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 998
Psp6I CCWGG 4 cut(s) 482, 543, 770, 956
PspGI CCWGG 4 cut(s) 482, 543, 770, 956
PspN4I GGNNCC 1 cut(s) 488
PspPI GGNCC 1 cut(s) 487
PstNI CAGNNNCTG 1 cut(s) 829
PsuI RGATCY 2 cut(s) 13, 279
PvuII CAGCTG 2 cut(s) 748, 829
RsaI GTAC 2 cut(s) 62, 1136
RsaNI GTAC 2 cut(s) 61, 1135
RseI CAYNNNNRTG 4 cut(s) 107, 588, 648, 708
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 4 cut(s) 462, 906, 933, 1065
SatI GCNGC 7 cut(s) 120, 598, 740, 824, 827, 1100, 1244
Sau3AI GATC 5 cut(s) 13, 264, 279, 325, 580
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 2 cut(s) 1174, 1190
ScrFI CCNGG 5 cut(s) 484, 545, 772, 882, 958
SfaNI GCATC 1 cut(s) 958
SinI GGWCC 1 cut(s) 487
SmiMI CAYNNNNRTG 4 cut(s) 107, 588, 648, 708
SmlI CTYRAG 1 cut(s) 723
SmoI CTYRAG 1 cut(s) 723
Sse9I AATT 4 cut(s) 80, 353, 1006, 1141
SsiI CCGC 1 cut(s) 740
SspMI CTAG 2 cut(s) 675, 1258
StyD4I CCNGG 5 cut(s) 482, 543, 770, 880, 956
TaqI TCGA 6 cut(s) 324, 626, 812, 856, 1004, 1106
TasI AATT 4 cut(s) 80, 353, 1006, 1141
TauI GCSGC 1 cut(s) 742
TfiI GAWTC 3 cut(s) 212, 757, 877
Tru1I TTAA 4 cut(s) 462, 906, 933, 1065
Tru9I TTAA 4 cut(s) 462, 906, 933, 1065
TscAI CASTG 4 cut(s) 376, 759, 958, 970
TseI GCWGC 6 cut(s) 119, 597, 823, 826, 1099, 1243
TspDTI ATGAA 5 cut(s) 59, 88, 400, 909, 1156
TspRI CASTG 4 cut(s) 376, 759, 958, 970
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 1 cut(s) 1141
XceI RCATGY 1 cut(s) 382
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 2 cut(s) 675, 1258
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.