Rroxscaffold_5G00369880

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0016310
Physical Location & Seq
Reverse (-)
51615692 .. 51616922
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00369880.1

Sequence Viewer

Length: 1155 bp
ATGGTGTTCTTGGCAGCCTCCTCGTTTTTATGGGTCGCGACCTCTCTCCTCGGCAACACCCATTACACCTCCAACTTGGGTTTCTCACCTCAATCCTCACTCTCTGATTCAAGCCCTTATCACAACTTCAAGCTCTTCGCCGCCGACTTCAAGGACATGATCCGGAGCTTCAAGATCTACGTCTACCCAACTAATTCATCTTCCTTTGGTCAGATTTTCGACCCCCACCCAAACCCATTCGACCCCAAAATGGGAAACTACTTCAGTGAACACATGTTCAAGCTGGCTCTGCTTGAGAGCCCACTCATTACCCACAATCCTGAAGAAGCTGATCTCTATTTCTTGCCGTTTTCGGTCAATCTTCTCCGAAACGACCCAAGAGTCCATTCGGAGGACGCCATTTCCGAATTTGTGGCTCATTACACCAATGAGATTAGCCAAGGGTTTCCTTTCTGGAATGCCTCCATGGGTTTGGATCATTTCTATGCTTGCTGCCACTCTGTTTGCAGAGAAGCCATGGCGAAACACAATGCCTTGCGCAACAATGCCATTCAGCTCACTTGCTCCTCCAGCTACTTTCAGAGGTTCTATGTCGCCCACAAAGACGTTTCCATGCCTCAAGTCTGGCCTCGCCCGCCTCAGCAGACCCTCAATCCCCCGAAATTGAGGGACAAGCTTGTGTTCTTTGCTGGGCGGGTTCAAAACTCGATTGTGAGGCAGCAGCTAGTGGATTTATGGGGCAATGATACTCACATGGACATCTTCTCCGAGAACCCATCCTATCCTTATGAAGAAGGGTTTAGGAGGAGCAAGTATTGCCTCCATGTTAAGGGCTATGAGGTGAACACTGCCAGGGTCAGTGATGCTATACACTATGGTTGTGTCCCTGTTATAATGTCGAATTACTATGAGCTTCCTTTCGCTAATGTGTTGAACTGGACCACATTTTCGGTCATCATTAACCACAATGAGGCTGCTTCGTTGAAGAAGACGTTGCTGTCGATAACAAAGAAGACGTACCTCAACATGTACCGGAATTTGTTGAGCGTCAGAAGGCACTTTGTTTGGCACAAGACTCCCAAGGGATATGATTCCTTCCACATGACTGCTTACCAGTTGTGGCTCAAAAGAGGGTCGCAGCGTCCATCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

384

Amino Acids

44.48

Weight (kDa)

8.85

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 55 - 332 3.4e-52 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016310)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21950
malus_domestica MD13G1135600.v1.1 MD16G1131200.v1.1
prunus_persica Prupe.1G209700_v2.0.a1
pyrus_communis pycom13g11830
rosa_chinensis RchiOBHm_Chr4g0428151
rosa_laevigata RLG00000007175
rosa_multiflora Rmu_sc0004940.1_g000009 Rmu_sc0009599.1_g000009
rosa_roxburghii Rroxscaffold_5G00369880
rosa_rugosa Rorug04G0223000
rosa_samantha Rh4BG285800 Rh4CG301100 Rh4DG282800
rosa_wichuraiana Rw4G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 893
AasI GACNNNNNNGTC 2 cut(s) 380, 997
Acc16I TGCGCA 1 cut(s) 539
AccI GTMKAC 1 cut(s) 183
AccII CGCG 1 cut(s) 38
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 3 cut(s) 141, 635, 694
AclWI GGATC 2 cut(s) 154, 483
AcsI RAATTY 2 cut(s) 407, 1036
AcuI CTGAAG 2 cut(s) 247, 342
AcyI GRCGYC 1 cut(s) 396
AfaI GTAC 2 cut(s) 1019, 1031
AfiI CCNNNNNNNGG 5 cut(s) 250, 251, 391, 829, 970
AflIII ACRYGT 2 cut(s) 273, 1026
AgsI TTSAA 8 cut(s) 111, 130, 151, 172, 280, 701, 934, 985
AjnI CCWGG 1 cut(s) 851
AjuI GAANNNNNNNTTGG 4 cut(s) 65, 97, 370, 402
AluBI AGCT 9 cut(s) 133, 168, 283, 329, 556, 573, 676, 724, 913
AluI AGCT 9 cut(s) 133, 168, 283, 329, 556, 573, 676, 724, 913
AlwI GGATC 2 cut(s) 154, 483
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 1 cut(s) 626
ApeKI GCWGC 6 cut(s) 14, 492, 718, 721, 974, 1138
ApoI RAATTY 2 cut(s) 407, 1036
ArsI GACNNNNNNTTYG 2 cut(s) 931, 963
AspLEI GCGC 1 cut(s) 540
AspS9I GGNCC 1 cut(s) 939
AsuHPI GGTGA 2 cut(s) 78, 853
AvaII GGWCC 1 cut(s) 939
BanII GRGCYC 1 cut(s) 302
BbsI GAAGAC 2 cut(s) 995, 1019
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 6 cut(s) 26, 479, 730, 733, 961, 1150
BccI CCATC 2 cut(s) 784, 1153
BceAI ACGGC 1 cut(s) 331
BcgI CGANNNNNNTGC 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 853
BfaI CTAG 2 cut(s) 725, 1153
BglII AGATCT 1 cut(s) 174
BisI GCNGC 7 cut(s) 15, 141, 493, 719, 722, 975, 1139
BlsI GCNGC 7 cut(s) 16, 142, 494, 720, 723, 976, 1140
Bme1390I CCNGG 1 cut(s) 853
Bme18I GGWCC 1 cut(s) 939
BmgT120I GGNCC 1 cut(s) 939
BmrFI CCNGG 1 cut(s) 853
BmsI GCATC 1 cut(s) 853
BpiI GAAGAC 2 cut(s) 995, 1019
BpmI CTGGAG 1 cut(s) 553
Bpu10I CCTNAGC 1 cut(s) 639
BpuEI CTTGAG 2 cut(s) 314, 603
BsaHI GRCGYC 1 cut(s) 396
BsaJI CCNNGG 6 cut(s) 49, 439, 465, 516, 852, 1080
BsaWI WCCGGW 2 cut(s) 162, 1032
BsaXI ACNNNNNCTCC 2 cut(s) 749, 779
Bsc4I CCNNNNNNNGG 5 cut(s) 250, 251, 391, 829, 970
Bse1I ACTGG 2 cut(s) 941, 1114
Bse3DI GCAATG 1 cut(s) 748
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 1 cut(s) 853
BseDI CCNNGG 6 cut(s) 49, 439, 465, 516, 852, 1080
BseGI GGATG 1 cut(s) 776
BseLI CCNNNNNNNGG 5 cut(s) 250, 251, 391, 829, 970
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 1 cut(s) 653
BseNI ACTGG 2 cut(s) 941, 1114
BseRI GAGGAG 4 cut(s) 10, 38, 556, 820
BseXI GCAGC 6 cut(s) 26, 479, 730, 733, 961, 1150
BseYI CCCAGC 1 cut(s) 689
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 628
BsiSI CCGG 2 cut(s) 163, 1033
BslFI GGGAC 2 cut(s) 683, 869
BslI CCNNNNNNNGG 5 cut(s) 250, 251, 391, 829, 970
BsmFI GGGAC 2 cut(s) 683, 869
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 628
Bsp1286I GDGCHC 1 cut(s) 302
Bsp13I TCCGGA 1 cut(s) 162
Bsp143I GATC 4 cut(s) 159, 174, 331, 475
Bsp19I CCATGG 2 cut(s) 465, 516
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 3 cut(s) 141, 635, 694
BspANI GGCC 1 cut(s) 628
BspCNI CTCAG 1 cut(s) 652
BspEI TCCGGA 1 cut(s) 162
BspFNI CGCG 1 cut(s) 38
BspPI GGATC 2 cut(s) 154, 483
BspQI GCTCTTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 748
BsrI ACTGG 2 cut(s) 941, 1114
BssECI CCNNGG 6 cut(s) 49, 439, 465, 516, 852, 1080
BssMI GATC 4 cut(s) 159, 174, 331, 475
BssNI GRCGYC 1 cut(s) 396
BssT1I CCWWGG 4 cut(s) 439, 465, 516, 1080
Bst2UI CCWGG 1 cut(s) 853
Bst6I CTCTTC 1 cut(s) 140
BstACI GRCGYC 1 cut(s) 396
BstAPI GCANNNNNTGC 1 cut(s) 816
BstC8I GCNNGC 3 cut(s) 285, 490, 635
BstDEI CTNAG 1 cut(s) 639
BstDSI CCRYGG 2 cut(s) 465, 516
BstF5I GGATG 1 cut(s) 776
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 4 cut(s) 162, 177, 334, 478
BstMBI GATC 4 cut(s) 159, 174, 331, 475
BstMWI GCNNNNNNNGC 4 cut(s) 289, 570, 634, 816
BstNI CCWGG 1 cut(s) 853
BstNSI RCATGY 2 cut(s) 277, 1030
BstSCI CCNGG 1 cut(s) 851
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 6 cut(s) 26, 479, 730, 733, 961, 1150
BstV2I GAAGAC 2 cut(s) 995, 1019
BstX2I RGATCY 1 cut(s) 174
BstXI CCANNNNNNTGG 1 cut(s) 472
BstYI RGATCY 1 cut(s) 174
BsuRI GGCC 1 cut(s) 628
BtgI CCRYGG 2 cut(s) 465, 516
BtsCI GGATG 1 cut(s) 776
BtsI GCAGTG 1 cut(s) 846
BtsIMutI CAGTG 3 cut(s) 271, 846, 865
BtuMI TCGCGA 1 cut(s) 38
Cac8I GCNNGC 3 cut(s) 285, 490, 635
CfoI GCGC 1 cut(s) 540
Cfr13I GGNCC 1 cut(s) 939
CseI GACGC 3 cut(s) 404, 1036, 1130
Csp6I GTAC 2 cut(s) 1018, 1030
CspCI CAANNNNNGTGG 2 cut(s) 485, 520
CviAII CATG 9 cut(s) 157, 274, 466, 517, 613, 754, 824, 1027, 1102
CviQI GTAC 2 cut(s) 1018, 1030
DdeI CTNAG 1 cut(s) 639
DpnI GATC 4 cut(s) 161, 176, 333, 477
DpnII GATC 4 cut(s) 159, 174, 331, 475
DrdI GACNNNNNNGTC 2 cut(s) 380, 997
DseDI GACNNNNNNGTC 2 cut(s) 380, 997
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco130I CCWWGG 4 cut(s) 439, 465, 516, 1080
Eco24I GRGCYC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 939
Eco57I CTGAAG 2 cut(s) 247, 342
EcoRII CCWGG 1 cut(s) 851
EcoT14I CCWWGG 4 cut(s) 439, 465, 516, 1080
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 4 cut(s) 439, 465, 516, 1080
FaeI CATG 9 cut(s) 160, 277, 469, 520, 616, 757, 827, 1030, 1105
FaqI GGGAC 2 cut(s) 683, 869
FatI CATG 9 cut(s) 156, 273, 465, 516, 612, 753, 823, 1026, 1101
FauI CCCGC 2 cut(s) 642, 687
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 7 cut(s) 15, 141, 493, 719, 722, 975, 1139
FokI GGATG 1 cut(s) 763
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 7 cut(s) 15, 141, 493, 719, 722, 975, 1139
FspBI CTAG 2 cut(s) 725, 1153
FspI TGCGCA 1 cut(s) 539
GlaI GCGC 1 cut(s) 539
GluI GCNGC 7 cut(s) 15, 141, 493, 719, 722, 975, 1139
GsaI CCCAGC 1 cut(s) 693
GsuI CTGGAG 1 cut(s) 553
HaeIII GGCC 1 cut(s) 628
HapII CCGG 2 cut(s) 163, 1033
HgaI GACGC 3 cut(s) 404, 1036, 1130
HhaI GCGC 1 cut(s) 540
Hin1I GRCGYC 1 cut(s) 396
Hin1II CATG 9 cut(s) 160, 277, 469, 520, 616, 757, 827, 1030, 1105
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HindIII AAGCTT 1 cut(s) 674
HinfI GANTC 4 cut(s) 107, 381, 1075, 1091
HpaII CCGG 2 cut(s) 163, 1033
HphI GGTGA 2 cut(s) 78, 853
Hpy166II GTNNAC 3 cut(s) 184, 269, 844
Hpy188I TCNGA 8 cut(s) 106, 213, 368, 391, 406, 582, 769, 1052
Hpy188III TCNNGA 5 cut(s) 37, 163, 172, 320, 454
Hpy8I GTNNAC 3 cut(s) 184, 269, 844
HpyAV CCTTC 3 cut(s) 788, 1047, 1105
HpyCH4IV ACGT 4 cut(s) 180, 606, 992, 1016
HpyCH4V TGCA 1 cut(s) 507
HpyF10VI GCNNNNNNNGC 4 cut(s) 289, 570, 634, 816
HpyF3I CTNAG 1 cut(s) 639
HpySE526I ACGT 4 cut(s) 180, 606, 992, 1016
Hsp92I GRCGYC 1 cut(s) 396
Hsp92II CATG 9 cut(s) 160, 277, 469, 520, 616, 757, 827, 1030, 1105
HspAI GCGC 1 cut(s) 538
Kpn2I TCCGGA 1 cut(s) 162
Kzo9I GATC 4 cut(s) 159, 174, 331, 475
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 3 cut(s) 165, 569, 807
Lsp1109I GCAGC 6 cut(s) 26, 479, 730, 733, 961, 1150
LweI GCATC 1 cut(s) 853
MaeI CTAG 2 cut(s) 725, 1153
MaeII ACGT 4 cut(s) 180, 606, 992, 1016
MalI GATC 4 cut(s) 161, 176, 333, 477
MboI GATC 4 cut(s) 159, 174, 331, 475
MboII GAAGA 9 cut(s) 127, 192, 335, 353, 754, 803, 997, 1000, 1024
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 5 cut(s) 193, 407, 662, 901, 1036
MlyI GAGTC 2 cut(s) 390, 1069
MmeI TCCRAC 1 cut(s) 96
MroI TCCGGA 1 cut(s) 162
MseI TTAA 2 cut(s) 828, 960
MslI CAYNNNNRTG 1 cut(s) 483
MspI CCGG 2 cut(s) 163, 1033
MspR9I CCNGG 1 cut(s) 853
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 1 cut(s) 853
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 4 cut(s) 289, 570, 634, 816
NcoI CCATGG 2 cut(s) 465, 516
NdeII GATC 4 cut(s) 159, 174, 331, 475
NlaIII CATG 9 cut(s) 160, 277, 469, 520, 616, 757, 827, 1030, 1105
NmeAIII GCCGAG 1 cut(s) 30
NruI TCGCGA 1 cut(s) 38
NsbI TGCGCA 1 cut(s) 539
NspI RCATGY 2 cut(s) 277, 1030
PciI ACATGT 2 cut(s) 273, 1026
PciSI GCTCTTC 1 cut(s) 140
PcsI WCGNNNNNNNCGW 2 cut(s) 402, 998
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 107, 1091
PkrI GCNGC 7 cut(s) 16, 142, 494, 720, 723, 976, 1140
PleI GAGTC 2 cut(s) 389, 1069
PpsI GAGTC 2 cut(s) 389, 1069
PscI ACATGT 2 cut(s) 273, 1026
PsiI TTATAA 1 cut(s) 893
Psp6I CCWGG 1 cut(s) 851
PspFI CCCAGC 1 cut(s) 689
PspGI CCWGG 1 cut(s) 851
PspPI GGNCC 1 cut(s) 939
PsuI RGATCY 1 cut(s) 174
RruI TCGCGA 1 cut(s) 38
RsaI GTAC 2 cut(s) 1019, 1031
RsaNI GTAC 2 cut(s) 1018, 1030
RseI CAYNNNNRTG 1 cut(s) 483
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 2 cut(s) 828, 960
SatI GCNGC 7 cut(s) 15, 141, 493, 719, 722, 975, 1139
Sau3AI GATC 4 cut(s) 159, 174, 331, 475
Sau96I GGNCC 1 cut(s) 939
SchI GAGTC 2 cut(s) 390, 1069
ScrFI CCNGG 1 cut(s) 853
SduI GDGCHC 1 cut(s) 302
SfaNI GCATC 1 cut(s) 853
SinI GGWCC 1 cut(s) 939
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 2 cut(s) 293, 618
SmoI CTYRAG 2 cut(s) 293, 618
Sse9I AATT 5 cut(s) 193, 407, 662, 901, 1036
SsiI CCGC 3 cut(s) 141, 635, 694
SspMI CTAG 2 cut(s) 725, 1153
StyD4I CCNGG 1 cut(s) 851
StyI CCWWGG 4 cut(s) 439, 465, 516, 1080
TaiI ACGT 4 cut(s) 183, 609, 995, 1019
TaqI TCGA 5 cut(s) 219, 240, 707, 899, 1001
TaqII GACCGA 2 cut(s) 343, 940
TasI AATT 5 cut(s) 193, 407, 662, 901, 1036
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 2 cut(s) 107, 1091
Tru1I TTAA 2 cut(s) 828, 960
Tru9I TTAA 2 cut(s) 828, 960
TscAI CASTG 3 cut(s) 271, 853, 865
TseI GCWGC 6 cut(s) 14, 492, 718, 721, 974, 1138
TspDTI ATGAA 2 cut(s) 186, 804
TspRI CASTG 3 cut(s) 271, 853, 865
VpaK11BI GGWCC 1 cut(s) 939
XapI RAATTY 2 cut(s) 407, 1036
XceI RCATGY 2 cut(s) 277, 1030
XmiI GTMKAC 1 cut(s) 183
XspI CTAG 2 cut(s) 725, 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.