Rh4BG285800

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0016310
Physical Location & Seq
Reverse (-)
45952581 .. 45954165
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG285800.1

Sequence Viewer

Length: 1266 bp
ATGCCAAGTGTGGATCTAAGAACAACAACAAGAAGAAGAAGCACCAAGATGAAAGCTTTGTTCTTGTACCTGAAGAAAAGGCCCAAACTGAAGCAAGGGGTCTTCCTTGCAATGGTGTTCTTGGCAGCCTCCTCGTTTTTATGGGTCGCAACCTCTCTCCTCCGCAACACCCGTTACACCTCCAACTTGGGTCTCTCACCTCAATCCTCACTCTCTGATTCAAGCCCTTATCACAACTTCAAGCTCTTCGCCGCCGACTTCAAGGACATGATCCGGAGCTTCAAGATCTACGTCTACCCAACTAATTCATCTTCCTTTGCTCAGATTTTCGACCCCCACCCAAACCCATTCGACCCCAAAATGGGAAACTACTTCAGTGAACACATGTTCAAGCTGGCTCTGATTGAGAGCTCACTCATTACCCACAATCCTGAAGAAGCTGATCTCTATTTCTTGCCGTTTTCGGTCAATCTTCTCCGAAACGACCCGAGGGTCCATTCGGAGGATGCCATTTCCGAATTTGTGGCTCATTACACCGATGAGATTAGCCAAGGGTTTCCTTTCTGGAATGCCTCCATGGGTTTGGATCATTTCTATGCTTGCTGCCACTCTGTTTGCAGAGAGGCCATGGCGAAACACAATGCCTTGCGCAACAATGCCATTCAGCTCACTTGCTCCTCCAGCTACTTTCAGAGGTTCTATGTCGCCCACAAAGACGTTTCCATGCCTCAAGTCTGGCCTCGCCCGCCTCAGCAAACCCTCAATCCCCCGAAACTGAGGGACAAGCTTGTGTTCTTTGCTGGGCGGGTTCAAAACTCGATTGTGAGGCAGCAGCTAGTGGATTTATGGGGCAATGATACTCACATGGACATCTTCTCCGAGAACCCATCCTATCCTTATGAAGAAGGGTTTAAGAGGAGCAAGTATTGCCTCCATGTTAAGGGCTATGAGGTGAACACTGCCAGGGTCAGTGATGCTATACACTATGGTTGTGTCCCTGTTATAATGTCGAATTACTATGAGCTTCCTTTCGCTAATGTGTTGAACTGGACCACATTTTCGGTCATCATTAACCACAATGAGGCTGCTTCGTTGAAGAAGACGTTGCTGTCGATAACAAAGAAGACTTACCTGAACATGTACCGGAATTTGTTGAGCGTCAGAAGGCACTTTGTTTGGCACAAGACTCCCAAGGGATATGATTCCTTCCACATGACTGCTTACCAGTTGTGGCTCAAAAGAGGGTCGCAGCGTCCATCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

421

Amino Acids

48.9

Weight (kDa)

9.5

Isoelectric Point (pI)

56.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 92 - 369 1.3e-52 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016310)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21950
malus_domestica MD13G1135600.v1.1 MD16G1131200.v1.1
prunus_persica Prupe.1G209700_v2.0.a1
pyrus_communis pycom13g11830
rosa_chinensis RchiOBHm_Chr4g0428151
rosa_laevigata RLG00000007175
rosa_multiflora Rmu_sc0004940.1_g000009 Rmu_sc0009599.1_g000009
rosa_roxburghii Rroxscaffold_5G00369880
rosa_rugosa Rorug04G0223000
rosa_samantha Rh4BG285800 Rh4CG301100 Rh4DG282800
rosa_wichuraiana Rw4G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1004
AasI GACNNNNNNGTC 2 cut(s) 491, 1108
Acc16I TGCGCA 1 cut(s) 650
AccI GTMKAC 1 cut(s) 294
AccIII TCCGGA 1 cut(s) 273
AciI CCGC 4 cut(s) 163, 252, 746, 805
AclWI GGATC 3 cut(s) 21, 265, 594
AcsI RAATTY 2 cut(s) 518, 1147
AcuI CTGAAG 4 cut(s) 92, 110, 358, 453
AfaI GTAC 2 cut(s) 68, 1142
AfiI CCNNNNNNNGG 6 cut(s) 112, 361, 362, 502, 940, 1081
AflIII ACRYGT 2 cut(s) 384, 1137
AgsI TTSAA 8 cut(s) 222, 241, 262, 283, 391, 812, 1045, 1096
AjnI CCWGG 1 cut(s) 962
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 3 cut(s) 21, 265, 594
Ama87I CYCGRG 1 cut(s) 487
Aor13HI TCCGGA 1 cut(s) 273
AoxI GGCC 3 cut(s) 80, 624, 737
ApeKI GCWGC 6 cut(s) 125, 603, 829, 832, 1085, 1249
ApoI RAATTY 2 cut(s) 518, 1147
ArsI GACNNNNNNTTYG 2 cut(s) 1042, 1074
AspLEI GCGC 1 cut(s) 651
AspS9I GGNCC 3 cut(s) 81, 493, 1050
AsuHPI GGTGA 2 cut(s) 189, 964
AvaI CYCGRG 1 cut(s) 487
AvaII GGWCC 2 cut(s) 493, 1050
BanII GRGCYC 1 cut(s) 413
BbsI GAAGAC 3 cut(s) 94, 1106, 1130
Bbv12I GWGCWC 1 cut(s) 413
BbvCI CCTCAGC 1 cut(s) 750
BbvI GCAGC 6 cut(s) 137, 590, 841, 844, 1072, 1261
BccI CCATC 2 cut(s) 895, 1264
BceAI ACGGC 1 cut(s) 442
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BciT130I CCWGG 1 cut(s) 964
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 2 cut(s) 836, 1264
BglII AGATCT 1 cut(s) 285
BisI GCNGC 7 cut(s) 126, 252, 604, 830, 833, 1086, 1250
BlsI GCNGC 7 cut(s) 127, 253, 605, 831, 834, 1087, 1251
Bme1390I CCNGG 1 cut(s) 964
Bme18I GGWCC 2 cut(s) 493, 1050
BmeT110I CYCGRG 1 cut(s) 487
BmgT120I GGNCC 3 cut(s) 81, 493, 1050
BmiI GGNNCC 1 cut(s) 494
BmrFI CCNGG 1 cut(s) 964
BmsI GCATC 2 cut(s) 496, 964
BpiI GAAGAC 3 cut(s) 94, 1106, 1130
BpmI CTGGAG 1 cut(s) 664
Bpu10I CCTNAGC 1 cut(s) 750
BpuEI CTTGAG 1 cut(s) 714
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 6 cut(s) 488, 550, 576, 627, 963, 1191
BsaWI WCCGGW 2 cut(s) 273, 1143
BsaXI ACNNNNNCTCC 2 cut(s) 860, 890
Bsc4I CCNNNNNNNGG 6 cut(s) 112, 361, 362, 502, 940, 1081
Bse1I ACTGG 2 cut(s) 1052, 1225
Bse3DI GCAATG 2 cut(s) 117, 859
BseAI TCCGGA 1 cut(s) 273
BseBI CCWGG 1 cut(s) 964
BseDI CCNNGG 6 cut(s) 488, 550, 576, 627, 963, 1191
BseGI GGATG 2 cut(s) 511, 887
BseLI CCNNNNNNNGG 6 cut(s) 112, 361, 362, 502, 940, 1081
BseMI GCAATG 2 cut(s) 117, 859
BseMII CTCAG 3 cut(s) 335, 764, 767
BseNI ACTGG 2 cut(s) 1052, 1225
BseRI GAGGAG 4 cut(s) 121, 149, 667, 931
BseXI GCAGC 6 cut(s) 137, 590, 841, 844, 1072, 1261
BseYI CCCAGC 1 cut(s) 800
BshFI GGCC 3 cut(s) 82, 626, 739
BsiHKAI GWGCWC 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 487
BsiSI CCGG 2 cut(s) 274, 1144
BslFI GGGAC 2 cut(s) 794, 980
BslI CCNNNNNNNGG 6 cut(s) 112, 361, 362, 502, 940, 1081
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 2 cut(s) 794, 980
BsmI GAATGC 1 cut(s) 574
BsnI GGCC 3 cut(s) 82, 626, 739
Bso31I GGTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 413
Bsp13I TCCGGA 1 cut(s) 273
Bsp143I GATC 5 cut(s) 13, 270, 285, 442, 586
Bsp19I CCATGG 2 cut(s) 576, 627
BspACI CCGC 4 cut(s) 163, 252, 746, 805
BspANI GGCC 3 cut(s) 82, 626, 739
BspCNI CTCAG 3 cut(s) 334, 763, 768
BspEI TCCGGA 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 494
BspPI GGATC 3 cut(s) 21, 265, 594
BspQI GCTCTTC 1 cut(s) 251
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 2 cut(s) 117, 859
BsrI ACTGG 2 cut(s) 1052, 1225
BssECI CCNNGG 6 cut(s) 488, 550, 576, 627, 963, 1191
BssMI GATC 5 cut(s) 13, 270, 285, 442, 586
BssT1I CCWWGG 4 cut(s) 550, 576, 627, 1191
Bst2UI CCWGG 1 cut(s) 964
Bst6I CTCTTC 1 cut(s) 251
BstAPI GCANNNNNTGC 1 cut(s) 927
BstC8I GCNNGC 3 cut(s) 396, 601, 746
BstDEI CTNAG 4 cut(s) 17, 321, 750, 776
BstDSI CCRYGG 2 cut(s) 576, 627
BstF5I GGATG 2 cut(s) 511, 887
BstHHI GCGC 1 cut(s) 651
BstKTI GATC 5 cut(s) 16, 273, 288, 445, 589
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 5 cut(s) 13, 270, 285, 442, 586
BstMWI GCNNNNNNNGC 3 cut(s) 681, 745, 927
BstNI CCWGG 1 cut(s) 964
BstNSI RCATGY 2 cut(s) 388, 1141
BstSCI CCNGG 1 cut(s) 962
BstV1I GCAGC 6 cut(s) 137, 590, 841, 844, 1072, 1261
BstV2I GAAGAC 3 cut(s) 94, 1106, 1130
BstX2I RGATCY 2 cut(s) 13, 285
BstXI CCANNNNNNTGG 1 cut(s) 583
BstYI RGATCY 2 cut(s) 13, 285
BsuRI GGCC 3 cut(s) 82, 626, 739
BtgI CCRYGG 2 cut(s) 576, 627
BtsCI GGATG 2 cut(s) 511, 887
BtsI GCAGTG 1 cut(s) 957
BtsIMutI CAGTG 3 cut(s) 382, 957, 976
Cac8I GCNNGC 3 cut(s) 396, 601, 746
CfoI GCGC 1 cut(s) 651
Cfr13I GGNCC 3 cut(s) 81, 493, 1050
CseI GACGC 2 cut(s) 1147, 1241
Csp6I GTAC 2 cut(s) 67, 1141
CspCI CAANNNNNGTGG 2 cut(s) 596, 631
CviAII CATG 9 cut(s) 268, 385, 577, 628, 724, 865, 935, 1138, 1213
CviQI GTAC 2 cut(s) 67, 1141
DdeI CTNAG 4 cut(s) 17, 321, 750, 776
DpnI GATC 5 cut(s) 15, 272, 287, 444, 588
DpnII GATC 5 cut(s) 13, 270, 285, 442, 586
DrdI GACNNNNNNGTC 2 cut(s) 491, 1108
DseDI GACNNNNNNGTC 2 cut(s) 491, 1108
Eam1104I CTCTTC 1 cut(s) 251
EarI CTCTTC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 411
Eco130I CCWWGG 4 cut(s) 550, 576, 627, 1191
Eco24I GRGCYC 1 cut(s) 413
Eco31I GGTCTC 1 cut(s) 197
Eco47I GGWCC 2 cut(s) 493, 1050
Eco53kI GAGCTC 1 cut(s) 411
Eco57I CTGAAG 4 cut(s) 92, 110, 358, 453
Eco88I CYCGRG 1 cut(s) 487
EcoICRI GAGCTC 1 cut(s) 411
EcoRII CCWGG 1 cut(s) 962
EcoT14I CCWWGG 4 cut(s) 550, 576, 627, 1191
EcoT38I GRGCYC 1 cut(s) 413
ErhI CCWWGG 4 cut(s) 550, 576, 627, 1191
FaeI CATG 9 cut(s) 271, 388, 580, 631, 727, 868, 938, 1141, 1216
FaqI GGGAC 2 cut(s) 794, 980
FatI CATG 9 cut(s) 267, 384, 576, 627, 723, 864, 934, 1137, 1212
FauI CCCGC 2 cut(s) 753, 798
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 7 cut(s) 126, 252, 604, 830, 833, 1086, 1250
FokI GGATG 2 cut(s) 518, 874
FriOI GRGCYC 1 cut(s) 413
Fsp4HI GCNGC 7 cut(s) 126, 252, 604, 830, 833, 1086, 1250
FspBI CTAG 2 cut(s) 836, 1264
FspI TGCGCA 1 cut(s) 650
GlaI GCGC 1 cut(s) 650
GluI GCNGC 7 cut(s) 126, 252, 604, 830, 833, 1086, 1250
GsaI CCCAGC 1 cut(s) 804
GsuI CTGGAG 1 cut(s) 664
HaeIII GGCC 3 cut(s) 82, 626, 739
HapII CCGG 2 cut(s) 274, 1144
HgaI GACGC 2 cut(s) 1147, 1241
HhaI GCGC 1 cut(s) 651
Hin1II CATG 9 cut(s) 271, 388, 580, 631, 727, 868, 938, 1141, 1216
Hin6I GCGC 1 cut(s) 649
HinP1I GCGC 1 cut(s) 649
HindIII AAGCTT 2 cut(s) 54, 785
HinfI GANTC 3 cut(s) 218, 1186, 1202
HpaII CCGG 2 cut(s) 274, 1144
HphI GGTGA 2 cut(s) 189, 964
Hpy166II GTNNAC 3 cut(s) 295, 380, 955
Hpy188I TCNGA 9 cut(s) 217, 324, 402, 479, 502, 517, 693, 880, 1163
Hpy188III TCNNGA 4 cut(s) 274, 283, 431, 565
Hpy8I GTNNAC 3 cut(s) 295, 380, 955
HpyAV CCTTC 3 cut(s) 899, 1158, 1216
HpyCH4IV ACGT 3 cut(s) 291, 717, 1103
HpyCH4V TGCA 2 cut(s) 110, 618
HpyF10VI GCNNNNNNNGC 3 cut(s) 681, 745, 927
HpyF3I CTNAG 4 cut(s) 17, 321, 750, 776
HpySE526I ACGT 3 cut(s) 291, 717, 1103
Hsp92II CATG 9 cut(s) 271, 388, 580, 631, 727, 868, 938, 1141, 1216
HspAI GCGC 1 cut(s) 649
Kpn2I TCCGGA 1 cut(s) 273
Kzo9I GATC 5 cut(s) 13, 270, 285, 442, 586
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 3 cut(s) 276, 680, 918
Lsp1109I GCAGC 6 cut(s) 137, 590, 841, 844, 1072, 1261
LweI GCATC 2 cut(s) 496, 964
MaeI CTAG 2 cut(s) 836, 1264
MaeII ACGT 3 cut(s) 291, 717, 1103
MaeIII GTNAC 1 cut(s) 173
MalI GATC 5 cut(s) 15, 272, 287, 444, 588
MboI GATC 5 cut(s) 13, 270, 285, 442, 586
MflI RGATCY 2 cut(s) 13, 285
MhlI GDGCHC 1 cut(s) 413
MluCI AATT 4 cut(s) 304, 518, 1012, 1147
MlyI GAGTC 1 cut(s) 1180
MmeI TCCRAC 1 cut(s) 207
MroI TCCGGA 1 cut(s) 273
MseI TTAA 3 cut(s) 912, 939, 1071
MslI CAYNNNNRTG 2 cut(s) 47, 594
MspI CCGG 2 cut(s) 274, 1144
MspR9I CCNGG 1 cut(s) 964
Mva1269I GAATGC 1 cut(s) 574
MvaI CCWGG 1 cut(s) 964
MwoI GCNNNNNNNGC 3 cut(s) 681, 745, 927
NcoI CCATGG 2 cut(s) 576, 627
NdeII GATC 5 cut(s) 13, 270, 285, 442, 586
NlaIII CATG 9 cut(s) 271, 388, 580, 631, 727, 868, 938, 1141, 1216
NlaIV GGNNCC 1 cut(s) 494
NsbI TGCGCA 1 cut(s) 650
NspI RCATGY 2 cut(s) 388, 1141
PciI ACATGT 2 cut(s) 384, 1137
PciSI GCTCTTC 1 cut(s) 251
PcsI WCGNNNNNNNCGW 1 cut(s) 1109
PctI GAATGC 1 cut(s) 574
PfeI GAWTC 2 cut(s) 218, 1202
PkrI GCNGC 7 cut(s) 127, 253, 605, 831, 834, 1087, 1251
PleI GAGTC 1 cut(s) 1180
PpsI GAGTC 1 cut(s) 1180
PscI ACATGT 2 cut(s) 384, 1137
PsiI TTATAA 1 cut(s) 1004
Psp124BI GAGCTC 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 962
PspFI CCCAGC 1 cut(s) 800
PspGI CCWGG 1 cut(s) 962
PspN4I GGNNCC 1 cut(s) 494
PspPI GGNCC 3 cut(s) 81, 493, 1050
PsuI RGATCY 2 cut(s) 13, 285
RsaI GTAC 2 cut(s) 68, 1142
RsaNI GTAC 2 cut(s) 67, 1141
RseI CAYNNNNRTG 2 cut(s) 47, 594
SacI GAGCTC 1 cut(s) 413
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 3 cut(s) 912, 939, 1071
SatI GCNGC 7 cut(s) 126, 252, 604, 830, 833, 1086, 1250
Sau3AI GATC 5 cut(s) 13, 270, 285, 442, 586
Sau96I GGNCC 3 cut(s) 81, 493, 1050
SchI GAGTC 1 cut(s) 1180
ScrFI CCNGG 1 cut(s) 964
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 2 cut(s) 496, 964
SinI GGWCC 2 cut(s) 493, 1050
SmiMI CAYNNNNRTG 2 cut(s) 47, 594
SmlI CTYRAG 1 cut(s) 729
SmoI CTYRAG 1 cut(s) 729
Sse9I AATT 4 cut(s) 304, 518, 1012, 1147
SsiI CCGC 4 cut(s) 163, 252, 746, 805
SspMI CTAG 2 cut(s) 836, 1264
SstI GAGCTC 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 962
StyI CCWWGG 4 cut(s) 550, 576, 627, 1191
TaiI ACGT 3 cut(s) 294, 720, 1106
TaqI TCGA 5 cut(s) 330, 351, 818, 1010, 1112
TaqII GACCGA 2 cut(s) 454, 1051
TasI AATT 4 cut(s) 304, 518, 1012, 1147
TauI GCSGC 1 cut(s) 254
TfiI GAWTC 2 cut(s) 218, 1202
Tru1I TTAA 3 cut(s) 912, 939, 1071
Tru9I TTAA 3 cut(s) 912, 939, 1071
TscAI CASTG 3 cut(s) 382, 964, 976
TseI GCWGC 6 cut(s) 125, 603, 829, 832, 1085, 1249
TspDTI ATGAA 3 cut(s) 65, 297, 915
TspRI CASTG 3 cut(s) 382, 964, 976
VpaK11BI GGWCC 2 cut(s) 493, 1050
XapI RAATTY 2 cut(s) 518, 1147
XceI RCATGY 2 cut(s) 388, 1141
XmiI GTMKAC 1 cut(s) 294
XspI CTAG 2 cut(s) 836, 1264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.