MD16G1131200.v1.1

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0016310
Physical Location & Seq
Forward (+)
10027956 .. 10029571
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1131200.v1.1.491

Sequence Viewer

Length: 1224 bp
ATGCCCAACCTCAAACGCCGGCTACTCCTGGCGGCAATGCTGGCGCTGGCCGTCTCCTCCGCTTCCTGGTTGTCCATCTTCCCTCTCCACTTATCCAAACAAAACAGCCATAATTTGGGTCTGTCCGCTCCTCCTCCTCCAGATTCAGGCCCTTACCACGACTGGGACCTCTTCGCGACCGATTTCCGAGAAATGCTCCAAAGCTTCAAGATTTACGTCTACCCCACCAATTCCAACAATTCCGATCCTCCTTCCTCCCCCTCCTTCGCTTCATTCCCCGCCGTCTTCCTCCCCCACCCCAACCCCTTCGACCCCAAGCTCGGAAACTACTTCAGCGAGCACATGTTCAAGCTCTCTCTCCTCTCCAGCTCCTTCGTCACCAACGACCCACAAAATGCCCACCTCTTCTTCCTCCCATTCTCCGTCAATGTCCTCCGCAACGACCCCCGTGTCCACTCCGAGTCCTCCATCGCCGAGTTTGTCGCCCACTACACTGCCGCCGTCGGCCGAGACTTCAAGTTCTGGAACGCCTCCTCTGGCGCCGACCACTTCTACGCCTGCTGTCACTCTGTTTGCAGAGAGGCCGCCGCCCAACATGCCGGGCTGCGCAACAATGCGATCCAGCTCACTTGCTCCTCCAGCTACTTCCAGAGATTGTATGTTACGCATAAAGATGTCGCCTTGCCGCAGGTTTGGCCACGGCCTCCTCAGCAATCCCTCAACCCCCCACAATCCAGGGATAAGCTTGTTTATTTCTCAGGACGAATTCAAAACTCGGACATTCGCCAACAGCTGATCGATTTATGGGGCAACGACACTCGCATGGACATATTTCCCGGCAACCCGTCTTACCCTTACGAAGAAGGGTTTCGGAGGAGCAAGTTTTGCCTCCATGTCAGAGGCTACGAGGTCAACACTGCGAGAGTGAGTGACGCAATACACTACGGCTGCATTCCGGTTATAATATCCAACCACTACGAGCTTCCATTTGCTAATGTCTTGGATTGGACCAAGTTCTCAGTTATTGTCAACAGTGGCGAGGTTTCCTTGTTGAAGAAGACATTGTTGTCGATAACAAGACAATCGTATGCGACGTTGTACCGTAATTTGATCAAGGTTCGTCGGCATTTTGTTTGGCACGAGACTCCGAAAGGTTACGACTCCTTCCACATGACTGCTTACCAGCTGTGGCTCAAAAGAAGCTCGCTGCGTCTGTCCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

408

Amino Acids

46.44

Weight (kDa)

9.18

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 67 - 355 3.4e-56 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016310)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21950
malus_domestica MD13G1135600.v1.1 MD16G1131200.v1.1
prunus_persica Prupe.1G209700_v2.0.a1
pyrus_communis pycom13g11830
rosa_chinensis RchiOBHm_Chr4g0428151
rosa_laevigata RLG00000007175
rosa_multiflora Rmu_sc0004940.1_g000009 Rmu_sc0009599.1_g000009
rosa_roxburghii Rroxscaffold_5G00369880
rosa_rugosa Rorug04G0223000
rosa_samantha Rh4BG285800 Rh4CG301100 Rh4DG282800
rosa_wichuraiana Rw4G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 962
AasI GACNNNNNNGTC 2 cut(s) 449, 1066
Acc16I TGCGCA 1 cut(s) 608
Acc36I ACCTGC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 539
AccB7I CCANNNNNTGG 1 cut(s) 115
AccBSI CCGCTC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 219
AccII CGCG 1 cut(s) 176
AclWI GGATC 2 cut(s) 239, 613
AcoI YGGCCR 3 cut(s) 48, 505, 695
AcsI RAATTY 1 cut(s) 765
AcuI CTGAAG 1 cut(s) 316
AcyI GRCGYC 1 cut(s) 540
AfaI GTAC 1 cut(s) 1100
AfiI CCNNNNNNNGG 5 cut(s) 66, 115, 146, 163, 320
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 5 cut(s) 208, 349, 517, 770, 1054
AjnI CCWGG 3 cut(s) 27, 65, 734
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 3 cut(s) 58, 504, 1136
AlwI GGATC 2 cut(s) 239, 613
AoxI GGCC 6 cut(s) 48, 148, 505, 582, 695, 701
ApeKI GCWGC 3 cut(s) 604, 948, 1207
ApoI RAATTY 1 cut(s) 765
Asp700I GAANNNNTTC 1 cut(s) 867
AspLEI GCGC 3 cut(s) 46, 542, 609
AspS9I GGNCC 3 cut(s) 149, 166, 1008
AsuC2I CCSGG 2 cut(s) 601, 837
AsuHPI GGTGA 1 cut(s) 370
AvaII GGWCC 2 cut(s) 166, 1008
BalI TGGCCA 1 cut(s) 697
BanI GGYRCC 1 cut(s) 539
BauI CACGAG 1 cut(s) 1139
BbsI GAAGAC 2 cut(s) 277, 1064
Bbv12I GWGCWC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 708
BbvI GCAGC 3 cut(s) 591, 935, 1194
BccI CCATC 2 cut(s) 83, 476
BceAI ACGGC 5 cut(s) 35, 266, 485, 716, 961
BciT130I CCWGG 3 cut(s) 29, 67, 736
BclI TGATCA 1 cut(s) 1110
BcnI CCSGG 2 cut(s) 601, 837
BcoDI GTCTC 3 cut(s) 58, 504, 1136
BfoI RGCGCY 2 cut(s) 47, 543
BfuAI ACCTGC 1 cut(s) 679
BisI GCNGC 8 cut(s) 33, 498, 585, 588, 605, 686, 949, 1208
BlsI GCNGC 8 cut(s) 34, 499, 586, 589, 606, 687, 950, 1209
Bme1390I CCNGG 5 cut(s) 29, 67, 601, 736, 837
Bme18I GGWCC 2 cut(s) 166, 1008
BmgT120I GGNCC 3 cut(s) 149, 166, 1008
BmiI GGNNCC 2 cut(s) 167, 541
BmrFI CCNGG 5 cut(s) 29, 67, 601, 736, 837
BmrI ACTGGG 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 172
BpiI GAAGAC 2 cut(s) 277, 1064
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 3 cut(s) 123, 349, 622
Bpu10I CCTNAGC 1 cut(s) 708
BpuMI CCSGG 2 cut(s) 601, 837
Bsa29I ATCGAT 1 cut(s) 798
BsaHI GRCGYC 1 cut(s) 540
BsaJI CCNNGG 2 cut(s) 698, 735
BsaWI WCCGGW 1 cut(s) 955
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 115, 146, 163, 320
Bse118I RCCGGY 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 3 cut(s) 29, 67, 736
BseCI ATCGAT 1 cut(s) 798
BseDI CCNNGG 2 cut(s) 698, 735
BseLI CCNNNNNNNGG 5 cut(s) 66, 115, 146, 163, 320
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 3 cut(s) 722, 771, 1032
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 9 cut(s) 46, 120, 123, 126, 350, 523, 625, 696, 889
BseX3I CGGCCG 1 cut(s) 505
BseXI GCAGC 3 cut(s) 591, 935, 1194
Bsh1236I CGCG 1 cut(s) 176
Bsh1285I CGRYCG 2 cut(s) 180, 508
BshFI GGCC 6 cut(s) 50, 150, 507, 584, 697, 703
BshNI GGYRCC 1 cut(s) 539
BshVI ATCGAT 1 cut(s) 798
BsiEI CGRYCG 2 cut(s) 180, 508
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 4 cut(s) 19, 600, 837, 956
BslFI GGGAC 1 cut(s) 179
BslI CCNNNNNNNGG 5 cut(s) 66, 115, 146, 163, 320
BsmAI GTCTC 3 cut(s) 58, 504, 1136
BsmBI CGTCTC 1 cut(s) 58
BsmFI GGGAC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 951
BsnI GGCC 6 cut(s) 50, 150, 507, 584, 697, 703
Bsp1286I GDGCHC 1 cut(s) 342
Bsp143I GATC 4 cut(s) 244, 618, 795, 1110
Bsp68I TCGCGA 1 cut(s) 176
BspANI GGCC 6 cut(s) 50, 150, 507, 584, 697, 703
BspCNI CTCAG 3 cut(s) 721, 770, 1031
BspDI ATCGAT 1 cut(s) 798
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 2 cut(s) 167, 541
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 2 cut(s) 239, 613
BspT107I GGYRCC 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 42
BsrFI RCCGGY 1 cut(s) 18
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 698, 735
BssMI GATC 4 cut(s) 244, 618, 795, 1110
BssNI GRCGYC 1 cut(s) 540
BssSI CACGAG 1 cut(s) 1139
Bst2BI CACGAG 1 cut(s) 1139
Bst2UI CCWGG 3 cut(s) 29, 67, 736
Bst4CI ACNGT 2 cut(s) 1034, 1103
Bst6I CTCTTC 2 cut(s) 176, 410
BstACI GRCGYC 1 cut(s) 540
BstAPI GCANNNNNTGC 1 cut(s) 885
BstC8I GCNNGC 6 cut(s) 20, 42, 48, 338, 559, 1205
BstDEI CTNAG 3 cut(s) 708, 757, 1018
BstDSI CCRYGG 1 cut(s) 698
BstFNI CGCG 1 cut(s) 176
BstH2I RGCGCY 2 cut(s) 47, 543
BstHHI GCGC 3 cut(s) 46, 542, 609
BstKTI GATC 4 cut(s) 247, 621, 798, 1113
BstMAI GTCTC 3 cut(s) 58, 504, 1136
BstMBI GATC 4 cut(s) 244, 618, 795, 1110
BstMCI CGRYCG 2 cut(s) 180, 508
BstMWI GCNNNNNNNGC 6 cut(s) 41, 596, 639, 694, 709, 885
BstNI CCWGG 3 cut(s) 29, 67, 736
BstNSI RCATGY 2 cut(s) 346, 599
BstSCI CCNGG 5 cut(s) 27, 65, 599, 734, 835
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 3 cut(s) 591, 935, 1194
BstV2I GAAGAC 2 cut(s) 277, 1064
BstZI CGGCCG 1 cut(s) 505
Bsu15I ATCGAT 1 cut(s) 798
BsuRI GGCC 6 cut(s) 50, 150, 507, 584, 697, 703
BsuTUI ATCGAT 1 cut(s) 798
BtgI CCRYGG 1 cut(s) 698
BtgZI GCGATG 1 cut(s) 454
BtsI GCAGTG 2 cut(s) 492, 915
BtsIMutI CAGTG 3 cut(s) 492, 915, 1039
BtuMI TCGCGA 1 cut(s) 176
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 6 cut(s) 20, 42, 48, 338, 559, 1205
CfoI GCGC 3 cut(s) 46, 542, 609
Cfr10I RCCGGY 1 cut(s) 18
Cfr13I GGNCC 3 cut(s) 149, 166, 1008
ClaI ATCGAT 1 cut(s) 798
CseI GACGC 2 cut(s) 941, 1199
Csp6I GTAC 1 cut(s) 1099
CviAII CATG 5 cut(s) 343, 596, 823, 893, 1171
CviQI GTAC 1 cut(s) 1099
DdeI CTNAG 3 cut(s) 708, 757, 1018
DinI GGCGCC 1 cut(s) 541
DpnI GATC 4 cut(s) 246, 620, 797, 1112
DpnII GATC 4 cut(s) 244, 618, 795, 1110
DrdI GACNNNNNNGTC 2 cut(s) 449, 1066
DseDI GACNNNNNNGTC 2 cut(s) 449, 1066
EaeI YGGCCR 3 cut(s) 48, 505, 695
EagI CGGCCG 1 cut(s) 505
Eam1104I CTCTTC 2 cut(s) 176, 410
EarI CTCTTC 2 cut(s) 176, 410
EciI GGCGGA 1 cut(s) 1207
EclXI CGGCCG 1 cut(s) 505
Eco47I GGWCC 2 cut(s) 166, 1008
Eco52I CGGCCG 1 cut(s) 505
Eco57I CTGAAG 1 cut(s) 316
EcoO109I RGGNCCY 2 cut(s) 149, 166
EcoRI GAATTC 1 cut(s) 765
EcoRII CCWGG 3 cut(s) 27, 65, 734
EgeI GGCGCC 1 cut(s) 541
EheI GGCGCC 1 cut(s) 541
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 5 cut(s) 346, 599, 826, 896, 1174
FaqI GGGAC 1 cut(s) 179
FatI CATG 5 cut(s) 342, 595, 822, 892, 1170
FauI CCCGC 1 cut(s) 286
FbaI TGATCA 1 cut(s) 1110
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 8 cut(s) 33, 498, 585, 588, 605, 686, 949, 1208
Fsp4HI GCNGC 8 cut(s) 33, 498, 585, 588, 605, 686, 949, 1208
FspI TGCGCA 1 cut(s) 608
GlaI GCGC 3 cut(s) 45, 541, 608
GluI GCNGC 8 cut(s) 33, 498, 585, 588, 605, 686, 949, 1208
GsuI CTGGAG 3 cut(s) 123, 349, 622
HaeII RGCGCY 2 cut(s) 47, 543
HaeIII GGCC 6 cut(s) 50, 150, 507, 584, 697, 703
HapII CCGG 4 cut(s) 19, 600, 837, 956
HgaI GACGC 2 cut(s) 941, 1199
HhaI GCGC 3 cut(s) 46, 542, 609
Hin1I GRCGYC 1 cut(s) 540
Hin1II CATG 5 cut(s) 346, 599, 826, 896, 1174
Hin6I GCGC 3 cut(s) 44, 540, 607
HinP1I GCGC 3 cut(s) 44, 540, 607
HincII GTYRAC 2 cut(s) 913, 1030
HindII GTYRAC 2 cut(s) 913, 1030
HindIII AAGCTT 2 cut(s) 202, 743
HinfI GANTC 4 cut(s) 143, 461, 1144, 1160
HpaII CCGG 4 cut(s) 19, 600, 837, 956
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 4 cut(s) 220, 454, 913, 1030
Hpy188I TCNGA 8 cut(s) 188, 244, 323, 460, 778, 873, 899, 1149
Hpy188III TCNNGA 6 cut(s) 140, 175, 208, 523, 649, 759
Hpy8I GTNNAC 4 cut(s) 220, 454, 913, 1030
Hpy99I CGWCG 3 cut(s) 506, 1096, 1125
HpyAV CCTTC 6 cut(s) 261, 274, 316, 382, 857, 1174
HpyCH4III ACNGT 2 cut(s) 1034, 1103
HpyCH4IV ACGT 2 cut(s) 216, 1094
HpyCH4V TGCA 2 cut(s) 576, 951
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 596, 639, 694, 709, 885
HpyF3I CTNAG 3 cut(s) 708, 757, 1018
HpySE526I ACGT 2 cut(s) 216, 1094
Hsp92I GRCGYC 1 cut(s) 540
Hsp92II CATG 5 cut(s) 346, 599, 826, 896, 1174
HspAI GCGC 3 cut(s) 44, 540, 607
KasI GGCGCC 1 cut(s) 539
KroI GCCGGC 1 cut(s) 18
KroNI GCCGGC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 1110
Kzo9I GATC 4 cut(s) 244, 618, 795, 1110
LmnI GCTCC 5 cut(s) 133, 201, 374, 638, 876
Lsp1109I GCAGC 3 cut(s) 591, 935, 1194
MaeII ACGT 2 cut(s) 216, 1094
MaeIII GTNAC 5 cut(s) 376, 563, 661, 929, 1154
MalI GATC 4 cut(s) 246, 620, 797, 1112
MbiI CCGCTC 1 cut(s) 128
MboI GATC 4 cut(s) 244, 618, 795, 1110
MboII GAAGA 8 cut(s) 70, 163, 277, 397, 400, 872, 1066, 1069
MhlI GDGCHC 1 cut(s) 342
MlsI TGGCCA 1 cut(s) 697
MluCI AATT 5 cut(s) 112, 229, 238, 765, 1105
MluNI TGGCCA 1 cut(s) 697
Mly113I GGCGCC 1 cut(s) 540
MlyI GAGTC 3 cut(s) 470, 1138, 1154
MmeI TCCRAC 2 cut(s) 258, 993
Mox20I TGGCCA 1 cut(s) 697
MroNI GCCGGC 1 cut(s) 18
MroXI GAANNNNTTC 1 cut(s) 867
MscI TGGCCA 1 cut(s) 697
MslI CAYNNNNRTG 2 cut(s) 672, 821
Msp20I TGGCCA 1 cut(s) 697
MspA1I CMGCKG 2 cut(s) 793, 1186
MspI CCGG 4 cut(s) 19, 600, 837, 956
MspR9I CCNGG 5 cut(s) 29, 67, 601, 736, 837
Mva1269I GAATGC 1 cut(s) 951
MvaI CCWGG 3 cut(s) 29, 67, 736
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 6 cut(s) 41, 596, 639, 694, 709, 885
NaeI GCCGGC 1 cut(s) 20
NarI GGCGCC 1 cut(s) 540
NciI CCSGG 2 cut(s) 601, 837
NdeII GATC 4 cut(s) 244, 618, 795, 1110
NgoMIV GCCGGC 1 cut(s) 18
NlaIII CATG 5 cut(s) 346, 599, 826, 896, 1174
NlaIV GGNNCC 2 cut(s) 167, 541
NmeAIII GCCGAG 2 cut(s) 499, 533
NmuCI GTSAC 3 cut(s) 376, 563, 929
NruI TCGCGA 1 cut(s) 176
NsbI TGCGCA 1 cut(s) 608
NspI RCATGY 2 cut(s) 346, 599
PciI ACATGT 1 cut(s) 342
PcsI WCGNNNNNNNCGW 2 cut(s) 381, 1091
PctI GAATGC 1 cut(s) 951
PdiI GCCGGC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 867
PfeI GAWTC 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 8 cut(s) 34, 499, 586, 589, 606, 687, 950, 1209
PleI GAGTC 3 cut(s) 469, 1138, 1154
PluTI GGCGCC 1 cut(s) 543
PpsI GAGTC 3 cut(s) 469, 1138, 1154
PpuMI RGGWCCY 1 cut(s) 166
PscI ACATGT 1 cut(s) 342
PsiI TTATAA 1 cut(s) 962
Psp5II RGGWCCY 1 cut(s) 166
Psp6I CCWGG 3 cut(s) 27, 65, 734
PspGI CCWGG 3 cut(s) 27, 65, 734
PspN4I GGNNCC 2 cut(s) 167, 541
PspPI GGNCC 3 cut(s) 149, 166, 1008
PspPPI RGGWCCY 1 cut(s) 166
PvuII CAGCTG 2 cut(s) 793, 1186
RruI TCGCGA 1 cut(s) 176
RsaI GTAC 1 cut(s) 1100
RsaNI GTAC 1 cut(s) 1099
RseI CAYNNNNRTG 2 cut(s) 672, 821
SatI GCNGC 8 cut(s) 33, 498, 585, 588, 605, 686, 949, 1208
Sau3AI GATC 4 cut(s) 244, 618, 795, 1110
Sau96I GGNCC 3 cut(s) 149, 166, 1008
SchI GAGTC 3 cut(s) 470, 1138, 1154
ScrFI CCNGG 5 cut(s) 29, 67, 601, 736, 837
SduI GDGCHC 1 cut(s) 342
SfoI GGCGCC 1 cut(s) 541
SinI GGWCC 2 cut(s) 166, 1008
SmiMI CAYNNNNRTG 2 cut(s) 672, 821
Sse9I AATT 5 cut(s) 112, 229, 238, 765, 1105
SspDI GGCGCC 1 cut(s) 539
StyD4I CCNGG 5 cut(s) 27, 65, 599, 734, 835
TaaI ACNGT 2 cut(s) 1034, 1103
TaiI ACGT 2 cut(s) 219, 1097
TaqI TCGA 3 cut(s) 309, 798, 1070
TaqII GACCGA 1 cut(s) 194
TasI AATT 5 cut(s) 112, 229, 238, 765, 1105
TauI GCSGC 5 cut(s) 35, 500, 587, 590, 688
TfiI GAWTC 1 cut(s) 143
TscAI CASTG 3 cut(s) 499, 922, 1039
TseFI GTSAC 3 cut(s) 376, 563, 929
TseI GCWGC 3 cut(s) 604, 948, 1207
Tsp45I GTSAC 3 cut(s) 376, 563, 929
TspDTI ATGAA 1 cut(s) 261
TspGWI ACGGA 1 cut(s) 412
TspRI CASTG 3 cut(s) 499, 922, 1039
Van91I CCANNNNNTGG 1 cut(s) 115
VpaK11BI GGWCC 2 cut(s) 166, 1008
XapI RAATTY 1 cut(s) 765
XceI RCATGY 2 cut(s) 346, 599
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.