Rh4CG301100

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0016310
Physical Location & Seq
Reverse (-)
56139671 .. 56141250
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG301100.1

Sequence Viewer

Length: 1263 bp
ATGCCAAGTGTGGATCTAAGAACAACAAGAAGAAGAAGCACCAAGATGAAAGCTTTGTTCTTGTACCTGAAGAAAAGGCCCAAACTGAAGCAAGGGTGCTTCCTTGCAATGGTGTTCTTTGCAGCCTCCTCGTTTTTATGGGTCGCAACCTCTCTCCTCCGCAACACCCATTACAGTTCCAACTTGGGTCTCTCGCCCCAATCCTCACTCTCTGATTCAAGCCCTTATCACAACTTCAAGCTCTTCGCCGCCGACTTCAAGGACATGATCCGGAGCTTCAAGATCTACGTCTACCCAACTAATTCATCTTCCTTTGCTCAGATTTTCGACCCCCACCCAAACCCATTCGACCCCAAAATGGGAAACTACTTCAGTGAACACATGTTCAAGCTGGCTCTGATTGAGAGCCCACTCATTACCCACAATCCTGAAGAAGCTGATCTCTATTTCTTGCCGTTTTCGGTCAATCTTCTCCGAAACGACCCAAGGGTCCACTCGGAGGATGCCATTTCCGAATTTGTGGCTCATTACACCAATGAGATTAGCCAAGGGTTTCCTTTCTGGAATGCCTCCATGGGTTTGGATCATTTCTATGCTTGCTGCCACTCTGTTTGCAGAGAAGCCATGGCGAAACACAACGCCTTGCGCAACAATGCCATTCAGCTCACTTGCTCCTCCAGCTACTTTCAGAGGTTCTATGTCGCCCACAAAGACGTTTCCATGCCTCAAGTCTGGCCTCGCCCGCCTCAGCAAACCCTCAATCCCCCGAAATTGAGGGACAAGCTTGTGTTCTTTGCTGGGCGGGTTCAAAACTCGAATGTGAGGCAGCAGCTAGTGGATTTATGGGGCAATGATACTCACATGGACATCTTCTTCGAGAACCCATCGTATCCTTATGAAGAAGGGTTTAAGAGGAGCAAGTATTGCCTCCATGTTAAGGGCTATGAGGTGAACACTGCCAGGGTCAGTGATGCTATACACTATGGGTGTGTCCCTGTTATAATGTCGAATTACTATGAGCTTCCTTTTGCTAATGTGTTGAACTGGACCACATTTTCGGTCATCATTAACCACAATGAGGCTGCTTCGTTGAAGAAGACGTTGCTGTCGATAACAAAGAAGACTTACCTGAACATGTACCGGAATTTGTTGAGCGTCAGAAGGCACTTTGTTTGGCACAAGACTCCCAAGGGATATGATTCCTTCCACATGACTGCGTACCAGTTGTGGCTCAAAAGAGGGTCGCAGCGTCCATCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

420

Amino Acids

48.88

Weight (kDa)

9.47

Isoelectric Point (pI)

58.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 91 - 368 2.6e-52 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016310)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21950
malus_domestica MD13G1135600.v1.1 MD16G1131200.v1.1
prunus_persica Prupe.1G209700_v2.0.a1
pyrus_communis pycom13g11830
rosa_chinensis RchiOBHm_Chr4g0428151
rosa_laevigata RLG00000007175
rosa_multiflora Rmu_sc0004940.1_g000009 Rmu_sc0009599.1_g000009
rosa_roxburghii Rroxscaffold_5G00369880
rosa_rugosa Rorug04G0223000
rosa_samantha Rh4BG285800 Rh4CG301100 Rh4DG282800
rosa_wichuraiana Rw4G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1001
AasI GACNNNNNNGTC 2 cut(s) 488, 1105
Acc16I TGCGCA 1 cut(s) 647
AccI GTMKAC 1 cut(s) 291
AccIII TCCGGA 1 cut(s) 270
AciI CCGC 4 cut(s) 160, 249, 743, 802
AclWI GGATC 3 cut(s) 21, 262, 591
AcsI RAATTY 2 cut(s) 515, 1144
AcuI CTGAAG 4 cut(s) 89, 107, 355, 450
AfaI GTAC 3 cut(s) 65, 1139, 1220
AfiI CCNNNNNNNGG 6 cut(s) 109, 358, 359, 499, 937, 1078
AflIII ACRYGT 2 cut(s) 381, 1134
AgsI TTSAA 8 cut(s) 219, 238, 259, 280, 388, 809, 1042, 1093
AjnI CCWGG 1 cut(s) 959
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 3 cut(s) 21, 262, 591
Aor13HI TCCGGA 1 cut(s) 270
AoxI GGCC 2 cut(s) 77, 734
ApeKI GCWGC 6 cut(s) 122, 600, 826, 829, 1082, 1246
ApoI RAATTY 2 cut(s) 515, 1144
ArsI GACNNNNNNTTYG 4 cut(s) 857, 889, 1039, 1071
AspLEI GCGC 1 cut(s) 648
AspS9I GGNCC 3 cut(s) 78, 490, 1047
AsuHPI GGTGA 1 cut(s) 961
AvaII GGWCC 2 cut(s) 490, 1047
BanII GRGCYC 1 cut(s) 410
BbsI GAAGAC 2 cut(s) 1103, 1127
BbvCI CCTCAGC 1 cut(s) 747
BbvI GCAGC 6 cut(s) 134, 587, 838, 841, 1069, 1258
BccI CCATC 2 cut(s) 892, 1261
BceAI ACGGC 1 cut(s) 439
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 1 cut(s) 961
BciVI GTATCC 1 cut(s) 900
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 2 cut(s) 833, 1261
BfuI GTATCC 1 cut(s) 900
BglII AGATCT 1 cut(s) 282
BisI GCNGC 7 cut(s) 123, 249, 601, 827, 830, 1083, 1247
BlsI GCNGC 7 cut(s) 124, 250, 602, 828, 831, 1084, 1248
Bme1390I CCNGG 1 cut(s) 961
Bme18I GGWCC 2 cut(s) 490, 1047
BmgT120I GGNCC 3 cut(s) 78, 490, 1047
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 1 cut(s) 961
BmsI GCATC 2 cut(s) 493, 961
BpiI GAAGAC 2 cut(s) 1103, 1127
BpmI CTGGAG 1 cut(s) 661
Bpu10I CCTNAGC 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 711
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 6 cut(s) 485, 547, 573, 624, 960, 1188
BsaWI WCCGGW 2 cut(s) 270, 1140
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 358, 359, 499, 937, 1078
Bse1I ACTGG 2 cut(s) 1049, 1222
Bse3DI GCAATG 2 cut(s) 114, 856
BseAI TCCGGA 1 cut(s) 270
BseBI CCWGG 1 cut(s) 961
BseDI CCNNGG 6 cut(s) 485, 547, 573, 624, 960, 1188
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 6 cut(s) 109, 358, 359, 499, 937, 1078
BseMI GCAATG 2 cut(s) 114, 856
BseMII CTCAG 2 cut(s) 332, 761
BseNI ACTGG 2 cut(s) 1049, 1222
BseRI GAGGAG 4 cut(s) 118, 146, 664, 928
BseXI GCAGC 6 cut(s) 134, 587, 838, 841, 1069, 1258
BseYI CCCAGC 1 cut(s) 797
BshFI GGCC 2 cut(s) 79, 736
BsiSI CCGG 2 cut(s) 271, 1141
BslFI GGGAC 2 cut(s) 791, 977
BslI CCNNNNNNNGG 6 cut(s) 109, 358, 359, 499, 937, 1078
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 2 cut(s) 791, 977
BsmI GAATGC 1 cut(s) 571
BsnI GGCC 2 cut(s) 79, 736
Bso31I GGTCTC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 410
Bsp13I TCCGGA 1 cut(s) 270
Bsp143I GATC 5 cut(s) 13, 267, 282, 439, 583
Bsp19I CCATGG 2 cut(s) 573, 624
BspACI CCGC 4 cut(s) 160, 249, 743, 802
BspANI GGCC 2 cut(s) 79, 736
BspCNI CTCAG 2 cut(s) 331, 760
BspEI TCCGGA 1 cut(s) 270
BspLI GGNNCC 1 cut(s) 491
BspPI GGATC 3 cut(s) 21, 262, 591
BspQI GCTCTTC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 194
BsrDI GCAATG 2 cut(s) 114, 856
BsrI ACTGG 2 cut(s) 1049, 1222
BssECI CCNNGG 6 cut(s) 485, 547, 573, 624, 960, 1188
BssMI GATC 5 cut(s) 13, 267, 282, 439, 583
BssT1I CCWWGG 5 cut(s) 485, 547, 573, 624, 1188
Bst2UI CCWGG 1 cut(s) 961
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 1 cut(s) 248
BstAPI GCANNNNNTGC 1 cut(s) 924
BstC8I GCNNGC 3 cut(s) 393, 598, 743
BstDEI CTNAG 3 cut(s) 17, 318, 747
BstDSI CCRYGG 2 cut(s) 573, 624
BstF5I GGATG 1 cut(s) 508
BstHHI GCGC 1 cut(s) 648
BstKTI GATC 5 cut(s) 16, 270, 285, 442, 586
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 5 cut(s) 13, 267, 282, 439, 583
BstMWI GCNNNNNNNGC 3 cut(s) 678, 742, 924
BstNI CCWGG 1 cut(s) 961
BstNSI RCATGY 2 cut(s) 385, 1138
BstSCI CCNGG 1 cut(s) 959
BstV1I GCAGC 6 cut(s) 134, 587, 838, 841, 1069, 1258
BstV2I GAAGAC 2 cut(s) 1103, 1127
BstX2I RGATCY 2 cut(s) 13, 282
BstXI CCANNNNNNTGG 1 cut(s) 580
BstYI RGATCY 2 cut(s) 13, 282
BsuI GTATCC 1 cut(s) 900
BsuRI GGCC 2 cut(s) 79, 736
BtgI CCRYGG 2 cut(s) 573, 624
BtsCI GGATG 1 cut(s) 508
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 3 cut(s) 379, 954, 973
Cac8I GCNNGC 3 cut(s) 393, 598, 743
CfoI GCGC 1 cut(s) 648
Cfr13I GGNCC 3 cut(s) 78, 490, 1047
CseI GACGC 2 cut(s) 1144, 1238
Csp6I GTAC 3 cut(s) 64, 1138, 1219
CspCI CAANNNNNGTGG 2 cut(s) 593, 628
CviAII CATG 9 cut(s) 265, 382, 574, 625, 721, 862, 932, 1135, 1210
CviQI GTAC 3 cut(s) 64, 1138, 1219
DdeI CTNAG 3 cut(s) 17, 318, 747
DpnI GATC 5 cut(s) 15, 269, 284, 441, 585
DpnII GATC 5 cut(s) 13, 267, 282, 439, 583
DrdI GACNNNNNNGTC 2 cut(s) 488, 1105
DseDI GACNNNNNNGTC 2 cut(s) 488, 1105
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco130I CCWWGG 5 cut(s) 485, 547, 573, 624, 1188
Eco24I GRGCYC 1 cut(s) 410
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 490, 1047
Eco57I CTGAAG 4 cut(s) 89, 107, 355, 450
EcoRII CCWGG 1 cut(s) 959
EcoT14I CCWWGG 5 cut(s) 485, 547, 573, 624, 1188
EcoT38I GRGCYC 1 cut(s) 410
ErhI CCWWGG 5 cut(s) 485, 547, 573, 624, 1188
FaeI CATG 9 cut(s) 268, 385, 577, 628, 724, 865, 935, 1138, 1213
FaqI GGGAC 2 cut(s) 791, 977
FatI CATG 9 cut(s) 264, 381, 573, 624, 720, 861, 931, 1134, 1209
FauI CCCGC 2 cut(s) 750, 795
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 7 cut(s) 123, 249, 601, 827, 830, 1083, 1247
FokI GGATG 1 cut(s) 515
FriOI GRGCYC 1 cut(s) 410
Fsp4HI GCNGC 7 cut(s) 123, 249, 601, 827, 830, 1083, 1247
FspBI CTAG 2 cut(s) 833, 1261
FspI TGCGCA 1 cut(s) 647
GlaI GCGC 1 cut(s) 647
GluI GCNGC 7 cut(s) 123, 249, 601, 827, 830, 1083, 1247
GsaI CCCAGC 1 cut(s) 801
GsuI CTGGAG 1 cut(s) 661
HaeIII GGCC 2 cut(s) 79, 736
HapII CCGG 2 cut(s) 271, 1141
HgaI GACGC 2 cut(s) 1144, 1238
HhaI GCGC 1 cut(s) 648
Hin1II CATG 9 cut(s) 268, 385, 577, 628, 724, 865, 935, 1138, 1213
Hin6I GCGC 1 cut(s) 646
HinP1I GCGC 1 cut(s) 646
HindIII AAGCTT 2 cut(s) 51, 782
HinfI GANTC 3 cut(s) 215, 1183, 1199
HpaII CCGG 2 cut(s) 271, 1141
HphI GGTGA 1 cut(s) 961
Hpy166II GTNNAC 4 cut(s) 292, 377, 493, 952
Hpy188I TCNGA 8 cut(s) 214, 321, 399, 476, 499, 514, 690, 1160
Hpy188III TCNNGA 5 cut(s) 271, 280, 428, 562, 877
Hpy8I GTNNAC 4 cut(s) 292, 377, 493, 952
HpyAV CCTTC 3 cut(s) 896, 1155, 1213
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 3 cut(s) 288, 714, 1100
HpyCH4V TGCA 3 cut(s) 107, 122, 615
HpyF10VI GCNNNNNNNGC 3 cut(s) 678, 742, 924
HpyF3I CTNAG 3 cut(s) 17, 318, 747
HpySE526I ACGT 3 cut(s) 288, 714, 1100
Hsp92II CATG 9 cut(s) 268, 385, 577, 628, 724, 865, 935, 1138, 1213
HspAI GCGC 1 cut(s) 646
Kpn2I TCCGGA 1 cut(s) 270
Kzo9I GATC 5 cut(s) 13, 267, 282, 439, 583
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 3 cut(s) 273, 677, 915
Lsp1109I GCAGC 6 cut(s) 134, 587, 838, 841, 1069, 1258
LweI GCATC 2 cut(s) 493, 961
MaeI CTAG 2 cut(s) 833, 1261
MaeII ACGT 3 cut(s) 288, 714, 1100
MalI GATC 5 cut(s) 15, 269, 284, 441, 585
MboI GATC 5 cut(s) 13, 267, 282, 439, 583
MflI RGATCY 2 cut(s) 13, 282
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 5 cut(s) 301, 515, 770, 1009, 1144
MlyI GAGTC 1 cut(s) 1177
MmeI TCCRAC 1 cut(s) 204
MroI TCCGGA 1 cut(s) 270
MseI TTAA 3 cut(s) 909, 936, 1068
MslI CAYNNNNRTG 2 cut(s) 44, 591
MspI CCGG 2 cut(s) 271, 1141
MspR9I CCNGG 1 cut(s) 961
Mva1269I GAATGC 1 cut(s) 571
MvaI CCWGG 1 cut(s) 961
MwoI GCNNNNNNNGC 3 cut(s) 678, 742, 924
NcoI CCATGG 2 cut(s) 573, 624
NdeII GATC 5 cut(s) 13, 267, 282, 439, 583
NlaIII CATG 9 cut(s) 268, 385, 577, 628, 724, 865, 935, 1138, 1213
NlaIV GGNNCC 1 cut(s) 491
NsbI TGCGCA 1 cut(s) 647
NspI RCATGY 2 cut(s) 385, 1138
PciI ACATGT 2 cut(s) 381, 1134
PciSI GCTCTTC 1 cut(s) 248
PcsI WCGNNNNNNNCGW 1 cut(s) 1106
PctI GAATGC 1 cut(s) 571
PfeI GAWTC 2 cut(s) 215, 1199
PkrI GCNGC 7 cut(s) 124, 250, 602, 828, 831, 1084, 1248
PleI GAGTC 1 cut(s) 1177
PpsI GAGTC 1 cut(s) 1177
PscI ACATGT 2 cut(s) 381, 1134
PsiI TTATAA 1 cut(s) 1001
Psp6I CCWGG 1 cut(s) 959
PspFI CCCAGC 1 cut(s) 797
PspGI CCWGG 1 cut(s) 959
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 3 cut(s) 78, 490, 1047
PsuI RGATCY 2 cut(s) 13, 282
RsaI GTAC 3 cut(s) 65, 1139, 1220
RsaNI GTAC 3 cut(s) 64, 1138, 1219
RseI CAYNNNNRTG 2 cut(s) 44, 591
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 3 cut(s) 909, 936, 1068
SatI GCNGC 7 cut(s) 123, 249, 601, 827, 830, 1083, 1247
Sau3AI GATC 5 cut(s) 13, 267, 282, 439, 583
Sau96I GGNCC 3 cut(s) 78, 490, 1047
SchI GAGTC 1 cut(s) 1177
ScrFI CCNGG 1 cut(s) 961
SduI GDGCHC 1 cut(s) 410
SfaNI GCATC 2 cut(s) 493, 961
SinI GGWCC 2 cut(s) 490, 1047
SmiMI CAYNNNNRTG 2 cut(s) 44, 591
SmlI CTYRAG 1 cut(s) 726
SmoI CTYRAG 1 cut(s) 726
Sse9I AATT 5 cut(s) 301, 515, 770, 1009, 1144
SsiI CCGC 4 cut(s) 160, 249, 743, 802
SspMI CTAG 2 cut(s) 833, 1261
StyD4I CCNGG 1 cut(s) 959
StyI CCWWGG 5 cut(s) 485, 547, 573, 624, 1188
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 3 cut(s) 291, 717, 1103
TaqI TCGA 6 cut(s) 327, 348, 815, 876, 1007, 1109
TaqII GACCGA 2 cut(s) 451, 1048
TasI AATT 5 cut(s) 301, 515, 770, 1009, 1144
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 2 cut(s) 215, 1199
Tru1I TTAA 3 cut(s) 909, 936, 1068
Tru9I TTAA 3 cut(s) 909, 936, 1068
TscAI CASTG 3 cut(s) 379, 961, 973
TseI GCWGC 6 cut(s) 122, 600, 826, 829, 1082, 1246
TspDTI ATGAA 3 cut(s) 62, 294, 912
TspRI CASTG 3 cut(s) 379, 961, 973
VpaK11BI GGWCC 2 cut(s) 490, 1047
XapI RAATTY 2 cut(s) 515, 1144
XceI RCATGY 2 cut(s) 385, 1138
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 2 cut(s) 833, 1261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.