Rw4G024340

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0016310
Physical Location & Seq
Reverse (-)
50195419 .. 50196712
1294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024340.1

Sequence Viewer

Length: 1218 bp
ATGAAAGCTTTGTTCTTGTACCTGAAGAAAAGGCCCAAACTGAAGCAAGGGGTCTTCCTTGCAATGGTGTTCTTGGCAGCCTCCTCGTTTTTATGGGTCGCAACCTCTCTCCTCGGCAACACCCATTACAGTTCCAACTTGGGTCTCTCGCCCCAATCCTCACTCTCTGATTCAAGCCCTTATCACAACTTCAAGCTCTTCGCCGCCGACTTCAAGGACATGATCCGGAGCTTCAAGATCTACGTCTACCCAACTAATTCATCTTCCTTTGCTCAGATTTTCGACCCCCACCCAAACCCATTCGACCCCAAAATGGGAAACTACTTCAGTGAACACATGTTCAAGCTGGCTCTGATTGAGAGCCCACTCATTACCCACAATCCCGAAGAAGCTGATCTCTATTTCTTGCCGTTCTCGGTCAATCTTCTCCGAAACGACCCAAGGGTCCATTCGGAGGATGCCATTTCCGAATTTGTGGCTCATTACACCAATGAGATTAGCCAAGGGTTTCCTTTCTGGAATGCCTCCATGGGTTTGGATCATTTCTATGCTTGCTGCCACTCTGTTTGCAGAGAAGCCATGGCGAAACACAATGCCTTGCGCAACAATGCCATTCAGCTCACTTGCTCCTCCAGCTACTTTCAGAGGTTCTATGTCGCCCACAAAGACGTTTCCATGCCTCAAGTCTGGCCTCGCCCGCCTCAGCAAACCCTCAATCCCCCGAAATTGAGGGACAAGCTTGTGTTCTTTGCTGGGCGGGTTCAAAACTCGATTGTGAGGCAGCAGCTAGTGGATTTATGGGGCAATGATACTCACATGGACATCTTCTCCGAGAACCCATCGTATCCTTATGAAGAAGGGTTTAAGAGGAGCAAGTATTGCCTCCATGTTAAGGGCTATGAGGTGAACACTGCCAGGGTCAGTGATGCTATACACTACGGGTGTGTCCCTGTTATAATGTCGAATTACTATGAGCTTCCTTTTGCTAATGTGTTGAACTGGACCACATTTTCGGTCATCATTAACCACAATGAGGCTGCTTCGTTGAAGAAGACGTTGCTGTCGATAACAAAGAAGACTTACCTGAACATGTACCGGAATTTGTTGAGCGTCAGAAGGCACTTTGTTTGGCACAAGACTCCCAAGGGATATGATTCCTTCCACATGACTGCGTACCAGTTGTGGCTCAAAAGAGGGTCGCAGCGTCCATCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

405

Amino Acids

46.89

Weight (kDa)

9.26

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 76 - 353 3.5e-52 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016310)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21950
malus_domestica MD13G1135600.v1.1 MD16G1131200.v1.1
prunus_persica Prupe.1G209700_v2.0.a1
pyrus_communis pycom13g11830
rosa_chinensis RchiOBHm_Chr4g0428151
rosa_laevigata RLG00000007175
rosa_multiflora Rmu_sc0004940.1_g000009 Rmu_sc0009599.1_g000009
rosa_roxburghii Rroxscaffold_5G00369880
rosa_rugosa Rorug04G0223000
rosa_samantha Rh4BG285800 Rh4CG301100 Rh4DG282800
rosa_wichuraiana Rw4G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AasI GACNNNNNNGTC 2 cut(s) 443, 1060
Acc16I TGCGCA 1 cut(s) 602
AccI GTMKAC 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 225
AciI CCGC 3 cut(s) 204, 698, 757
AclWI GGATC 2 cut(s) 217, 546
AcsI RAATTY 2 cut(s) 470, 1099
AcuI CTGAAG 3 cut(s) 44, 62, 310
AfaI GTAC 3 cut(s) 20, 1094, 1175
AfiI CCNNNNNNNGG 6 cut(s) 64, 313, 314, 454, 892, 1033
AflIII ACRYGT 2 cut(s) 336, 1089
AgsI TTSAA 8 cut(s) 174, 193, 214, 235, 343, 764, 997, 1048
AjnI CCWGG 1 cut(s) 914
AjuI GAANNNNNNNTTGG 2 cut(s) 433, 465
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 2 cut(s) 217, 546
Aor13HI TCCGGA 1 cut(s) 225
AoxI GGCC 2 cut(s) 32, 689
ApeKI GCWGC 6 cut(s) 77, 555, 781, 784, 1037, 1201
ApoI RAATTY 2 cut(s) 470, 1099
ArsI GACNNNNNNTTYG 2 cut(s) 994, 1026
AspLEI GCGC 1 cut(s) 603
AspS9I GGNCC 3 cut(s) 33, 445, 1002
AsuHPI GGTGA 1 cut(s) 916
AvaII GGWCC 2 cut(s) 445, 1002
BanII GRGCYC 1 cut(s) 365
BbsI GAAGAC 3 cut(s) 46, 1058, 1082
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 6 cut(s) 89, 542, 793, 796, 1024, 1213
BccI CCATC 2 cut(s) 847, 1216
BceAI ACGGC 1 cut(s) 394
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciT130I CCWGG 1 cut(s) 916
BciVI GTATCC 1 cut(s) 855
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 2 cut(s) 788, 1216
BfuI GTATCC 1 cut(s) 855
BglII AGATCT 1 cut(s) 237
BisI GCNGC 7 cut(s) 78, 204, 556, 782, 785, 1038, 1202
BlsI GCNGC 7 cut(s) 79, 205, 557, 783, 786, 1039, 1203
Bme1390I CCNGG 1 cut(s) 916
Bme18I GGWCC 2 cut(s) 445, 1002
BmgT120I GGNCC 3 cut(s) 33, 445, 1002
BmiI GGNNCC 1 cut(s) 446
BmrFI CCNGG 1 cut(s) 916
BmsI GCATC 2 cut(s) 448, 916
BpiI GAAGAC 3 cut(s) 46, 1058, 1082
BpmI CTGGAG 1 cut(s) 616
Bpu10I CCTNAGC 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 666
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 7 cut(s) 112, 440, 502, 528, 579, 915, 1143
BsaWI WCCGGW 2 cut(s) 225, 1095
BsaXI ACNNNNNCTCC 2 cut(s) 812, 842
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 313, 314, 454, 892, 1033
Bse1I ACTGG 2 cut(s) 1004, 1177
Bse3DI GCAATG 2 cut(s) 69, 811
BseAI TCCGGA 1 cut(s) 225
BseBI CCWGG 1 cut(s) 916
BseDI CCNNGG 7 cut(s) 112, 440, 502, 528, 579, 915, 1143
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 6 cut(s) 64, 313, 314, 454, 892, 1033
BseMI GCAATG 2 cut(s) 69, 811
BseMII CTCAG 2 cut(s) 287, 716
BseNI ACTGG 2 cut(s) 1004, 1177
BseRI GAGGAG 4 cut(s) 73, 101, 619, 883
BseXI GCAGC 6 cut(s) 89, 542, 793, 796, 1024, 1213
BseYI CCCAGC 1 cut(s) 752
BshFI GGCC 2 cut(s) 34, 691
BsiSI CCGG 2 cut(s) 226, 1096
BslFI GGGAC 2 cut(s) 746, 932
BslI CCNNNNNNNGG 6 cut(s) 64, 313, 314, 454, 892, 1033
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 2 cut(s) 746, 932
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 2 cut(s) 34, 691
Bso31I GGTCTC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 365
Bsp13I TCCGGA 1 cut(s) 225
Bsp143I GATC 4 cut(s) 222, 237, 394, 538
Bsp19I CCATGG 2 cut(s) 528, 579
BspACI CCGC 3 cut(s) 204, 698, 757
BspANI GGCC 2 cut(s) 34, 691
BspCNI CTCAG 2 cut(s) 286, 715
BspEI TCCGGA 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 446
BspPI GGATC 2 cut(s) 217, 546
BspQI GCTCTTC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 149
BsrDI GCAATG 2 cut(s) 69, 811
BsrI ACTGG 2 cut(s) 1004, 1177
BssECI CCNNGG 7 cut(s) 112, 440, 502, 528, 579, 915, 1143
BssMI GATC 4 cut(s) 222, 237, 394, 538
BssT1I CCWWGG 5 cut(s) 440, 502, 528, 579, 1143
Bst2UI CCWGG 1 cut(s) 916
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 879
BstC8I GCNNGC 3 cut(s) 348, 553, 698
BstDEI CTNAG 2 cut(s) 273, 702
BstDSI CCRYGG 2 cut(s) 528, 579
BstF5I GGATG 1 cut(s) 463
BstHHI GCGC 1 cut(s) 603
BstKTI GATC 4 cut(s) 225, 240, 397, 541
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 4 cut(s) 222, 237, 394, 538
BstMWI GCNNNNNNNGC 3 cut(s) 633, 697, 879
BstNI CCWGG 1 cut(s) 916
BstNSI RCATGY 2 cut(s) 340, 1093
BstSCI CCNGG 1 cut(s) 914
BstV1I GCAGC 6 cut(s) 89, 542, 793, 796, 1024, 1213
BstV2I GAAGAC 3 cut(s) 46, 1058, 1082
BstX2I RGATCY 1 cut(s) 237
BstXI CCANNNNNNTGG 1 cut(s) 535
BstYI RGATCY 1 cut(s) 237
BsuI GTATCC 1 cut(s) 855
BsuRI GGCC 2 cut(s) 34, 691
BtgI CCRYGG 2 cut(s) 528, 579
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 909
BtsIMutI CAGTG 3 cut(s) 334, 909, 928
Cac8I GCNNGC 3 cut(s) 348, 553, 698
CfoI GCGC 1 cut(s) 603
Cfr13I GGNCC 3 cut(s) 33, 445, 1002
CseI GACGC 2 cut(s) 1099, 1193
Csp6I GTAC 3 cut(s) 19, 1093, 1174
CspCI CAANNNNNGTGG 2 cut(s) 548, 583
CviAII CATG 9 cut(s) 220, 337, 529, 580, 676, 817, 887, 1090, 1165
CviQI GTAC 3 cut(s) 19, 1093, 1174
DdeI CTNAG 2 cut(s) 273, 702
DpnI GATC 4 cut(s) 224, 239, 396, 540
DpnII GATC 4 cut(s) 222, 237, 394, 538
DrdI GACNNNNNNGTC 2 cut(s) 443, 1060
DseDI GACNNNNNNGTC 2 cut(s) 443, 1060
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Eco130I CCWWGG 5 cut(s) 440, 502, 528, 579, 1143
Eco24I GRGCYC 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 445, 1002
Eco57I CTGAAG 3 cut(s) 44, 62, 310
EcoRII CCWGG 1 cut(s) 914
EcoT14I CCWWGG 5 cut(s) 440, 502, 528, 579, 1143
EcoT38I GRGCYC 1 cut(s) 365
ErhI CCWWGG 5 cut(s) 440, 502, 528, 579, 1143
FaeI CATG 9 cut(s) 223, 340, 532, 583, 679, 820, 890, 1093, 1168
FaqI GGGAC 2 cut(s) 746, 932
FatI CATG 9 cut(s) 219, 336, 528, 579, 675, 816, 886, 1089, 1164
FauI CCCGC 2 cut(s) 705, 750
FblI GTMKAC 1 cut(s) 246
Fnu4HI GCNGC 7 cut(s) 78, 204, 556, 782, 785, 1038, 1202
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 7 cut(s) 78, 204, 556, 782, 785, 1038, 1202
FspBI CTAG 2 cut(s) 788, 1216
FspI TGCGCA 1 cut(s) 602
GlaI GCGC 1 cut(s) 602
GluI GCNGC 7 cut(s) 78, 204, 556, 782, 785, 1038, 1202
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 1 cut(s) 616
HaeIII GGCC 2 cut(s) 34, 691
HapII CCGG 2 cut(s) 226, 1096
HgaI GACGC 2 cut(s) 1099, 1193
HhaI GCGC 1 cut(s) 603
Hin1II CATG 9 cut(s) 223, 340, 532, 583, 679, 820, 890, 1093, 1168
Hin6I GCGC 1 cut(s) 601
HinP1I GCGC 1 cut(s) 601
HindIII AAGCTT 2 cut(s) 6, 737
HinfI GANTC 3 cut(s) 170, 1138, 1154
HpaII CCGG 2 cut(s) 226, 1096
HphI GGTGA 1 cut(s) 916
Hpy166II GTNNAC 3 cut(s) 247, 332, 907
Hpy188I TCNGA 9 cut(s) 169, 276, 354, 431, 454, 469, 645, 832, 1115
Hpy188III TCNNGA 4 cut(s) 226, 235, 383, 517
Hpy8I GTNNAC 3 cut(s) 247, 332, 907
HpyAV CCTTC 3 cut(s) 851, 1110, 1168
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4IV ACGT 3 cut(s) 243, 669, 1055
HpyCH4V TGCA 2 cut(s) 62, 570
HpyF10VI GCNNNNNNNGC 3 cut(s) 633, 697, 879
HpyF3I CTNAG 2 cut(s) 273, 702
HpySE526I ACGT 3 cut(s) 243, 669, 1055
Hsp92II CATG 9 cut(s) 223, 340, 532, 583, 679, 820, 890, 1093, 1168
HspAI GCGC 1 cut(s) 601
Kpn2I TCCGGA 1 cut(s) 225
Kzo9I GATC 4 cut(s) 222, 237, 394, 538
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 3 cut(s) 228, 632, 870
Lsp1109I GCAGC 6 cut(s) 89, 542, 793, 796, 1024, 1213
LweI GCATC 2 cut(s) 448, 916
MaeI CTAG 2 cut(s) 788, 1216
MaeII ACGT 3 cut(s) 243, 669, 1055
MalI GATC 4 cut(s) 224, 239, 396, 540
MboI GATC 4 cut(s) 222, 237, 394, 538
MflI RGATCY 1 cut(s) 237
MhlI GDGCHC 1 cut(s) 365
MluCI AATT 5 cut(s) 256, 470, 725, 964, 1099
MlyI GAGTC 1 cut(s) 1132
MmeI TCCRAC 1 cut(s) 159
MroI TCCGGA 1 cut(s) 225
MseI TTAA 3 cut(s) 864, 891, 1023
MslI CAYNNNNRTG 1 cut(s) 546
MspI CCGG 2 cut(s) 226, 1096
MspR9I CCNGG 1 cut(s) 916
Mva1269I GAATGC 1 cut(s) 526
MvaI CCWGG 1 cut(s) 916
MwoI GCNNNNNNNGC 3 cut(s) 633, 697, 879
NcoI CCATGG 2 cut(s) 528, 579
NdeII GATC 4 cut(s) 222, 237, 394, 538
NlaIII CATG 9 cut(s) 223, 340, 532, 583, 679, 820, 890, 1093, 1168
NlaIV GGNNCC 1 cut(s) 446
NmeAIII GCCGAG 1 cut(s) 93
NsbI TGCGCA 1 cut(s) 602
NspI RCATGY 2 cut(s) 340, 1093
PciI ACATGT 2 cut(s) 336, 1089
PciSI GCTCTTC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 1061
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 2 cut(s) 170, 1154
PkrI GCNGC 7 cut(s) 79, 205, 557, 783, 786, 1039, 1203
PleI GAGTC 1 cut(s) 1132
PpsI GAGTC 1 cut(s) 1132
PscI ACATGT 2 cut(s) 336, 1089
PsiI TTATAA 1 cut(s) 956
Psp6I CCWGG 1 cut(s) 914
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 1 cut(s) 914
PspN4I GGNNCC 1 cut(s) 446
PspPI GGNCC 3 cut(s) 33, 445, 1002
PsuI RGATCY 1 cut(s) 237
RsaI GTAC 3 cut(s) 20, 1094, 1175
RsaNI GTAC 3 cut(s) 19, 1093, 1174
RseI CAYNNNNRTG 1 cut(s) 546
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 3 cut(s) 864, 891, 1023
SatI GCNGC 7 cut(s) 78, 204, 556, 782, 785, 1038, 1202
Sau3AI GATC 4 cut(s) 222, 237, 394, 538
Sau96I GGNCC 3 cut(s) 33, 445, 1002
SchI GAGTC 1 cut(s) 1132
ScrFI CCNGG 1 cut(s) 916
SduI GDGCHC 1 cut(s) 365
SfaNI GCATC 2 cut(s) 448, 916
SinI GGWCC 2 cut(s) 445, 1002
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 1 cut(s) 681
SmoI CTYRAG 1 cut(s) 681
Sse9I AATT 5 cut(s) 256, 470, 725, 964, 1099
SsiI CCGC 3 cut(s) 204, 698, 757
SspMI CTAG 2 cut(s) 788, 1216
StyD4I CCNGG 1 cut(s) 914
StyI CCWWGG 5 cut(s) 440, 502, 528, 579, 1143
TaaI ACNGT 1 cut(s) 131
TaiI ACGT 3 cut(s) 246, 672, 1058
TaqI TCGA 5 cut(s) 282, 303, 770, 962, 1064
TaqII GACCGA 2 cut(s) 406, 1003
TasI AATT 5 cut(s) 256, 470, 725, 964, 1099
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 2 cut(s) 170, 1154
Tru1I TTAA 3 cut(s) 864, 891, 1023
Tru9I TTAA 3 cut(s) 864, 891, 1023
TscAI CASTG 3 cut(s) 334, 916, 928
TseI GCWGC 6 cut(s) 77, 555, 781, 784, 1037, 1201
TspDTI ATGAA 3 cut(s) 17, 249, 867
TspRI CASTG 3 cut(s) 334, 916, 928
VpaK11BI GGWCC 2 cut(s) 445, 1002
XapI RAATTY 2 cut(s) 470, 1099
XceI RCATGY 2 cut(s) 340, 1093
XmiI GTMKAC 1 cut(s) 246
XspI CTAG 2 cut(s) 788, 1216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.