pycom13g11830

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0016310
Physical Location & Seq
Forward (+)
8177086 .. 8178715
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g11830.2

Sequence Viewer

Length: 1305 bp
ATGAAAAAACAGTTTGCCTTCACAAGTTTGGAACAAGATACCAAGATGCGTCCTCTGTACTTATCACTGAAGAAAATGCCCAAATTCAAACGCCGGCTGCTGCTGGCGGCGCTGCTGGCGCTGGCCGTCTCCTCCGCCTCATGGTTCTCCATCTTCCTCCTCCAGTTGTCCGAACAAAAGGGCCATAATTTGGGTCTGTCAGCTCCTCTTCCTCCAGATTCAGGACCTTACCACGACTGGCGTCTCTTCGCCGCCGATTTCCGAGAAATGCTCCAAACCTTCAAGATTTACGTCTATCCCACCAATTCCAACAAGTCCGATCCTCCTTCCTCCTCCGCCTCCTTCGCTTCCTTCGCCGCCGTCTTCCTCCCCCACCCCAACCCCTTCAACCCGAAGCTCGGAAACTACTTCAGCGAGCACATGTTCAAGATCTCTCTCCTCTCCAGCTCCCTCGTCACCACCGACCCACAAAAAGCCCACCTCTTCTTCCTCCCGTTCTCCGTCAATCTCCTCCGCAATGACCCCCGAGTGCACTCCGACTCCTCCATCGCCGAGTTTGTCGCCAAATACACTGCTGCCGTCGGCCGAGACTTCAAGTTCTGGAACGCCTCCTCTGGATCGATCTCGACCACTTCTACGCCTGCTGTCACTCTGTTTGCAGAGAGGCCGCCGCTAAACATGCCGGGCTGCACAACAATGCGATCCAGCTCACTTGCTCCTCCAGCTACTTTCAGAGATTGTATGTTACGCATAAAGATGTCGCCTTGCCGCAGGTTTGGCCGCGGCCTTCTCTGCAATCCCTCAACCCTCCACATGCCAGATAAGCTCGTTTACTTCTCCGGACGAATCCAAAACTCGAATATTCGCCAACAGCTGATCGATTTATGGGGCAACGACACTCGCATGGACATATTTCCCGGCAACCCGTCTTACCCTTATGAAGAAGGGTTTAGGAGGAGCAAGTTTTGCCTCCATGTCAAAGGCAATGAGGTCAACACTGCGAGAGTGAGTGATGCCATACACTACGGCTGCATTCCTGTTATAATTTCCAACCACTATGAGCTTCCGTTCGCTAATGTGCTGGACTGGAGCAAGTTCTCGGTTATTGTCAACCATGGCGAGGTTGCCTTGTTGAAGAAGACATTGTTGTCGATAACAAGACAATCCTATGTGAGATTGTACCGGAATTTGATCAAGGTTCGTAGGCATTTTGTTTGGCACGAGACTCCCCAAGGTTACGACTCCTTTCACATGACTGCTTACCAGCTGTGGCTGAAAAGGAGCTCGCTGCGTCTGTCGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

435

Amino Acids

49.43

Weight (kDa)

9.87

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016310)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21950
malus_domestica MD13G1135600.v1.1 MD16G1131200.v1.1
prunus_persica Prupe.1G209700_v2.0.a1
pyrus_communis pycom13g11830
rosa_chinensis RchiOBHm_Chr4g0428151
rosa_laevigata RLG00000007175
rosa_multiflora Rmu_sc0004940.1_g000009 Rmu_sc0009599.1_g000009
rosa_roxburghii Rroxscaffold_5G00369880
rosa_rugosa Rorug04G0223000
rosa_samantha Rh4BG285800 Rh4CG301100 Rh4DG282800
rosa_wichuraiana Rw4G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1043
AasI GACNNNNNNGTC 1 cut(s) 1147
Acc36I ACCTGC 1 cut(s) 762
AccB7I CCANNNNNTGG 1 cut(s) 190
AccII CGCG 1 cut(s) 783
AccIII TCCGGA 1 cut(s) 839
AclWI GGATC 3 cut(s) 314, 625, 696
AcoI YGGCCR 3 cut(s) 123, 583, 778
AcsI RAATTY 2 cut(s) 83, 1186
AcuI CTGAAG 2 cut(s) 89, 394
AcyI GRCGYC 1 cut(s) 241
AfaI GTAC 2 cut(s) 59, 1181
AfiI CCNNNNNNNGG 5 cut(s) 141, 190, 221, 398, 1120
AflIII ACRYGT 1 cut(s) 420
AgsI TTSAA 6 cut(s) 88, 283, 388, 427, 595, 1135
Alw21I GWGCWC 3 cut(s) 420, 534, 1286
Alw26I GTCTC 4 cut(s) 133, 248, 582, 1217
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 3 cut(s) 314, 625, 696
Ama87I CYCGRG 1 cut(s) 525
Aor13HI TCCGGA 1 cut(s) 839
AoxI GGCC 7 cut(s) 123, 181, 583, 665, 778, 784, 1299
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 7 cut(s) 97, 100, 112, 575, 687, 1029, 1288
ApoI RAATTY 2 cut(s) 83, 1186
AspLEI GCGC 2 cut(s) 112, 121
AspS9I GGNCC 2 cut(s) 181, 224
AsuC2I CCSGG 2 cut(s) 684, 918
AsuHPI GGTGA 1 cut(s) 448
AvaI CYCGRG 1 cut(s) 525
AvaII GGWCC 1 cut(s) 224
BaeGI GKGCMC 1 cut(s) 534
BanII GRGCYC 1 cut(s) 1286
BauI CACGAG 1 cut(s) 1220
BbsI GAAGAC 2 cut(s) 355, 1145
Bbv12I GWGCWC 3 cut(s) 420, 534, 1286
BbvI GCAGC 7 cut(s) 84, 87, 99, 562, 674, 1016, 1275
BccI CCATC 2 cut(s) 158, 554
BceAI ACGGC 4 cut(s) 110, 344, 563, 1042
BclI TGATCA 1 cut(s) 1191
BcnI CCSGG 2 cut(s) 684, 918
BcoDI GTCTC 4 cut(s) 133, 248, 582, 1217
BfoI RGCGCY 2 cut(s) 113, 122
BfuAI ACCTGC 1 cut(s) 762
BglII AGATCT 1 cut(s) 429
Bme1390I CCNGG 2 cut(s) 684, 918
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 525
BmgT120I GGNCC 2 cut(s) 181, 224
BmrFI CCNGG 2 cut(s) 684, 918
BmsI GCATC 2 cut(s) 36, 1003
BoxI GACNNNNGTC 1 cut(s) 240
BpiI GAAGAC 2 cut(s) 355, 1145
BplI GAGNNNNNCTC 2 cut(s) 255, 287
BpmI CTGGAG 5 cut(s) 146, 198, 427, 705, 1108
BpuMI CCSGG 2 cut(s) 684, 918
Bsa29I ATCGAT 2 cut(s) 620, 879
BsaHI GRCGYC 1 cut(s) 241
BsaJI CCNNGG 3 cut(s) 781, 1114, 1231
BsaWI WCCGGW 2 cut(s) 839, 1182
BsaXI ACNNNNNCTCC 2 cut(s) 524, 554
Bsc4I CCNNNNNNNGG 5 cut(s) 141, 190, 221, 398, 1120
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 3 cut(s) 163, 242, 1091
Bse3DI GCAATG 2 cut(s) 523, 991
BseAI TCCGGA 1 cut(s) 839
BseCI ATCGAT 2 cut(s) 620, 879
BseDI CCNNGG 3 cut(s) 781, 1114, 1231
BseLI CCNNNNNNNGG 5 cut(s) 141, 190, 221, 398, 1120
BseMI GCAATG 2 cut(s) 523, 991
BseNI ACTGG 3 cut(s) 163, 242, 1091
BseSI GKGCMC 1 cut(s) 534
BseX3I CGGCCG 1 cut(s) 583
BseXI GCAGC 7 cut(s) 84, 87, 99, 562, 674, 1016, 1275
BsgI GTGCAG 1 cut(s) 673
Bsh1236I CGCG 1 cut(s) 783
Bsh1285I CGRYCG 1 cut(s) 586
BshFI GGCC 7 cut(s) 125, 183, 585, 667, 780, 786, 1301
BshVI ATCGAT 2 cut(s) 620, 879
BsiEI CGRYCG 1 cut(s) 586
BsiHKAI GWGCWC 3 cut(s) 420, 534, 1286
BsiHKCI CYCGRG 1 cut(s) 525
BsiSI CCGG 5 cut(s) 94, 683, 840, 918, 1183
BslI CCNNNNNNNGG 5 cut(s) 141, 190, 221, 398, 1120
BsmAI GTCTC 4 cut(s) 133, 248, 582, 1217
BsmBI CGTCTC 2 cut(s) 133, 248
BsmI GAATGC 1 cut(s) 1032
BsnI GGCC 7 cut(s) 125, 183, 585, 667, 780, 786, 1301
BsoBI CYCGRG 1 cut(s) 525
Bsp1286I GDGCHC 3 cut(s) 420, 534, 1286
Bsp13I TCCGGA 1 cut(s) 839
Bsp143I GATC 7 cut(s) 319, 429, 617, 621, 701, 876, 1191
Bsp19I CCATGG 1 cut(s) 1114
BspANI GGCC 7 cut(s) 125, 183, 585, 667, 780, 786, 1301
BspDI ATCGAT 2 cut(s) 620, 879
BspEI TCCGGA 1 cut(s) 839
BspFNI CGCG 1 cut(s) 783
BspMI ACCTGC 1 cut(s) 762
BspPI GGATC 3 cut(s) 314, 625, 696
BsrDI GCAATG 2 cut(s) 523, 991
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 3 cut(s) 163, 242, 1091
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 3 cut(s) 781, 1114, 1231
BssMI GATC 7 cut(s) 319, 429, 617, 621, 701, 876, 1191
BssNI GRCGYC 1 cut(s) 241
BssSI CACGAG 1 cut(s) 1220
BssT1I CCWWGG 2 cut(s) 1114, 1231
Bst2BI CACGAG 1 cut(s) 1220
Bst4CI ACNGT 1 cut(s) 12
Bst6I CTCTTC 3 cut(s) 213, 251, 488
BstACI GRCGYC 1 cut(s) 241
BstAPI GCANNNNNTGC 1 cut(s) 966
BstC8I GCNNGC 7 cut(s) 95, 105, 117, 123, 416, 642, 1286
BstDSI CCRYGG 2 cut(s) 781, 1114
BstFNI CGCG 1 cut(s) 783
BstH2I RGCGCY 2 cut(s) 113, 122
BstHHI GCGC 2 cut(s) 112, 121
BstKTI GATC 7 cut(s) 322, 432, 620, 624, 704, 879, 1194
BstMAI GTCTC 4 cut(s) 133, 248, 582, 1217
BstMBI GATC 7 cut(s) 319, 429, 617, 621, 701, 876, 1191
BstMCI CGRYCG 1 cut(s) 586
BstNSI RCATGY 3 cut(s) 424, 682, 817
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 682, 916
BstSLI GKGCMC 1 cut(s) 534
BstUI CGCG 1 cut(s) 783
BstV1I GCAGC 7 cut(s) 84, 87, 99, 562, 674, 1016, 1275
BstV2I GAAGAC 2 cut(s) 355, 1145
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BstZI CGGCCG 1 cut(s) 583
Bsu15I ATCGAT 2 cut(s) 620, 879
BsuRI GGCC 7 cut(s) 125, 183, 585, 667, 780, 786, 1301
BsuTUI ATCGAT 2 cut(s) 620, 879
BtgI CCRYGG 2 cut(s) 781, 1114
BtgZI GCGATG 1 cut(s) 532
BtsI GCAGTG 2 cut(s) 570, 996
BtsIMutI CAGTG 3 cut(s) 65, 570, 996
BveI ACCTGC 1 cut(s) 762
Cac8I GCNNGC 7 cut(s) 95, 105, 117, 123, 416, 642, 1286
CfoI GCGC 2 cut(s) 112, 121
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 181, 224
Cfr42I CCGCGG 1 cut(s) 784
ClaI ATCGAT 2 cut(s) 620, 879
CseI GACGC 3 cut(s) 38, 230, 1280
Csp6I GTAC 2 cut(s) 58, 1180
CviAII CATG 8 cut(s) 141, 421, 679, 814, 904, 974, 1115, 1252
CviQI GTAC 2 cut(s) 58, 1180
DpnI GATC 7 cut(s) 321, 431, 619, 623, 703, 878, 1193
DpnII GATC 7 cut(s) 319, 429, 617, 621, 701, 876, 1191
DrdI GACNNNNNNGTC 1 cut(s) 1147
DseDI GACNNNNNNGTC 1 cut(s) 1147
EaeI YGGCCR 3 cut(s) 123, 583, 778
EagI CGGCCG 1 cut(s) 583
Eam1104I CTCTTC 3 cut(s) 213, 251, 488
EarI CTCTTC 3 cut(s) 213, 251, 488
EciI GGCGGA 2 cut(s) 124, 325
Ecl136II GAGCTC 1 cut(s) 1284
EclXI CGGCCG 1 cut(s) 583
Eco130I CCWWGG 2 cut(s) 1114, 1231
Eco24I GRGCYC 1 cut(s) 1286
Eco47I GGWCC 1 cut(s) 224
Eco52I CGGCCG 1 cut(s) 583
Eco53kI GAGCTC 1 cut(s) 1284
Eco57I CTGAAG 2 cut(s) 89, 394
Eco88I CYCGRG 1 cut(s) 525
EcoICRI GAGCTC 1 cut(s) 1284
EcoO109I RGGNCCY 1 cut(s) 224
EcoT14I CCWWGG 2 cut(s) 1114, 1231
EcoT38I GRGCYC 1 cut(s) 1286
ErhI CCWWGG 2 cut(s) 1114, 1231
Esp3I CGTCTC 2 cut(s) 133, 248
FaeI CATG 8 cut(s) 144, 424, 682, 817, 907, 977, 1118, 1255
FatI CATG 8 cut(s) 140, 420, 678, 813, 903, 973, 1114, 1251
FbaI TGATCA 1 cut(s) 1191
FriOI GRGCYC 1 cut(s) 1286
GlaI GCGC 2 cut(s) 111, 120
GsuI CTGGAG 5 cut(s) 146, 198, 427, 705, 1108
HaeII RGCGCY 2 cut(s) 113, 122
HaeIII GGCC 7 cut(s) 125, 183, 585, 667, 780, 786, 1301
HapII CCGG 5 cut(s) 94, 683, 840, 918, 1183
HgaI GACGC 3 cut(s) 38, 230, 1280
HhaI GCGC 2 cut(s) 112, 121
Hin1I GRCGYC 1 cut(s) 241
Hin1II CATG 8 cut(s) 144, 424, 682, 817, 907, 977, 1118, 1255
Hin6I GCGC 2 cut(s) 110, 119
HinP1I GCGC 2 cut(s) 110, 119
HincII GTYRAC 2 cut(s) 994, 1111
HindII GTYRAC 2 cut(s) 994, 1111
HinfI GANTC 5 cut(s) 218, 539, 846, 1225, 1241
HpaII CCGG 5 cut(s) 94, 683, 840, 918, 1183
HphI GGTGA 1 cut(s) 448
Hpy166II GTNNAC 4 cut(s) 532, 832, 994, 1111
Hpy188I TCNGA 6 cut(s) 172, 263, 319, 401, 538, 734
Hpy188III TCNNGA 8 cut(s) 215, 222, 283, 427, 601, 615, 625, 840
Hpy8I GTNNAC 4 cut(s) 532, 832, 994, 1111
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 8 cut(s) 28, 289, 336, 352, 361, 394, 797, 938
HpyCH4III ACNGT 1 cut(s) 12
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 532, 659, 690, 795, 1032
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 241
Hsp92II CATG 8 cut(s) 144, 424, 682, 817, 907, 977, 1118, 1255
HspAI GCGC 2 cut(s) 110, 119
Kpn2I TCCGGA 1 cut(s) 839
KroI GCCGGC 1 cut(s) 93
KroNI GCCGGC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 1191
KspI CCGCGG 1 cut(s) 784
Kzo9I GATC 7 cut(s) 319, 429, 617, 621, 701, 876, 1191
LmnI GCTCC 7 cut(s) 208, 276, 452, 721, 957, 1089, 1281
Lsp1109I GCAGC 7 cut(s) 84, 87, 99, 562, 674, 1016, 1275
LweI GCATC 2 cut(s) 36, 1003
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 4 cut(s) 454, 646, 744, 1235
MalI GATC 7 cut(s) 321, 431, 619, 623, 703, 878, 1193
MboI GATC 7 cut(s) 319, 429, 617, 621, 701, 876, 1191
MflI RGATCY 1 cut(s) 429
MhlI GDGCHC 3 cut(s) 420, 534, 1286
MluCI AATT 5 cut(s) 83, 187, 304, 1044, 1186
MlyI GAGTC 3 cut(s) 533, 1219, 1235
MmeI TCCRAC 3 cut(s) 333, 561, 1074
MroI TCCGGA 1 cut(s) 839
MroNI GCCGGC 1 cut(s) 93
MslI CAYNNNNRTG 3 cut(s) 695, 755, 902
MspA1I CMGCKG 3 cut(s) 783, 874, 1267
MspI CCGG 5 cut(s) 94, 683, 840, 918, 1183
MspR9I CCNGG 2 cut(s) 684, 918
Mva1269I GAATGC 1 cut(s) 1032
MvnI CGCG 1 cut(s) 783
NaeI GCCGGC 1 cut(s) 95
NciI CCSGG 2 cut(s) 684, 918
NcoI CCATGG 1 cut(s) 1114
NdeII GATC 7 cut(s) 319, 429, 617, 621, 701, 876, 1191
NgoMIV GCCGGC 1 cut(s) 93
NlaIII CATG 8 cut(s) 144, 424, 682, 817, 907, 977, 1118, 1255
NmeAIII GCCGAG 2 cut(s) 577, 611
NmuCI GTSAC 2 cut(s) 454, 646
NspI RCATGY 3 cut(s) 424, 682, 817
PciI ACATGT 1 cut(s) 420
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PctI GAATGC 1 cut(s) 1032
PdiI GCCGGC 1 cut(s) 95
PfeI GAWTC 2 cut(s) 218, 846
PflMI CCANNNNNTGG 1 cut(s) 190
PleI GAGTC 3 cut(s) 533, 1219, 1235
PpsI GAGTC 3 cut(s) 533, 1219, 1235
PpuMI RGGWCCY 1 cut(s) 224
PscI ACATGT 1 cut(s) 420
PshAI GACNNNNGTC 1 cut(s) 240
PsiI TTATAA 1 cut(s) 1043
Psp124BI GAGCTC 1 cut(s) 1286
Psp5II RGGWCCY 1 cut(s) 224
PspPI GGNCC 2 cut(s) 181, 224
PspPPI RGGWCCY 1 cut(s) 224
PsuI RGATCY 1 cut(s) 429
PvuII CAGCTG 2 cut(s) 874, 1267
RsaI GTAC 2 cut(s) 59, 1181
RsaNI GTAC 2 cut(s) 58, 1180
RseI CAYNNNNRTG 3 cut(s) 695, 755, 902
SacI GAGCTC 1 cut(s) 1286
SacII CCGCGG 1 cut(s) 784
Sau3AI GATC 7 cut(s) 319, 429, 617, 621, 701, 876, 1191
Sau96I GGNCC 2 cut(s) 181, 224
SchI GAGTC 3 cut(s) 533, 1219, 1235
ScrFI CCNGG 2 cut(s) 684, 918
SduI GDGCHC 3 cut(s) 420, 534, 1286
SfaNI GCATC 2 cut(s) 36, 1003
Sfr303I CCGCGG 1 cut(s) 784
SgrBI CCGCGG 1 cut(s) 784
SinI GGWCC 1 cut(s) 224
SmiMI CAYNNNNRTG 3 cut(s) 695, 755, 902
Sse9I AATT 5 cut(s) 83, 187, 304, 1044, 1186
SspI AATATT 1 cut(s) 862
SstI GAGCTC 1 cut(s) 1286
StyD4I CCNGG 2 cut(s) 682, 916
StyI CCWWGG 2 cut(s) 1114, 1231
TaaI ACNGT 1 cut(s) 12
TaiI ACGT 1 cut(s) 294
TaqI TCGA 5 cut(s) 620, 626, 857, 879, 1151
TasI AATT 5 cut(s) 83, 187, 304, 1044, 1186
TatI WGTACW 1 cut(s) 57
TauI GCSGC 8 cut(s) 110, 254, 359, 670, 673, 771, 783, 786
TfiI GAWTC 2 cut(s) 218, 846
TscAI CASTG 3 cut(s) 72, 577, 1003
TseFI GTSAC 2 cut(s) 454, 646
TseI GCWGC 7 cut(s) 97, 100, 112, 575, 687, 1029, 1288
Tsp45I GTSAC 2 cut(s) 454, 646
TspDTI ATGAA 2 cut(s) 17, 954
TspGWI ACGGA 2 cut(s) 490, 1056
TspRI CASTG 3 cut(s) 72, 577, 1003
Van91I CCANNNNNTGG 1 cut(s) 190
VneI GTGCAC 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 2 cut(s) 83, 1186
XceI RCATGY 3 cut(s) 424, 682, 817
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.