MD13G1135600.v1.1

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0016310
Physical Location & Seq
Forward (+)
10438744 .. 10440837
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1135600.v1.1.491

Sequence Viewer

Length: 1257 bp
ATGCGTACTCTGTACTTATCACTGAAGAAAATGCCCAAGTTCAAACGCCGGCTGCTCCTGGCGGCGCTGCTTGCGCTGGCAGTCTCCTCCGCCTCATGGTTCTCCATCTTCCTCCTCCAGTTGTCCGAACAAAAGAGCCATAATTTGGGTCTGTCAGCTCCTCTTCCTCCAGATTCAGGCCCTTACCACGACTGGCGTCTCTTCGCCGCCGATTTCCGAGAAATGCTCCAAACCTTCCAGATTTACGTCTATCCCACCAATTCCAACAAGTCCGATCCTCCTTCCTCCTCCGCCTCATTCGCTTCCTTCGCCGCCGTCTTCCTCCCCCACCCCAACCCCTTCAACCCGAAGCTCGGAAACTACTTCAGCGAGCACATGTTCAAGATCTCTCTCCTCTCCAGCTCCCTCGTCACCACCGACCCACAAAAAGCCCACCTCTTCTTCCTCCCATTCTCCGTTAATCTCCTCCGCAACGACCCCCGAGTCCACTCCGAGTCCTCCGTCGCCGAGTTTGTCGCCAAATACACTGCCGCCGTCGGCCGAGACTTCAAGTTCTGGAACGCCTCCTCTGGATCCGACCACTTCTACGCCTGCTGTCACTCTGTTTGCAGAGAGGCCGCCGCTAAACATGCCGGGCTGCACAACAATGCGATCCAGCTCACTTGCTCCTCCAGCTACTTTCAGAGATTGTATGTTACGCATAAAGATGTCGCCTTGCCGCAGGTTTGGCCGCGGCCTCCTCTGCAATCCCTCAACCCTCCACATGCTAGAGATAAGCTCGTTTACTTCTCCGGACGAATCCAAAACTCGAATACTCGCCAACAGCTGATCGATTTATGGGGCAACGACACTCGAATGGACATATTTCCCGGCAACCCGTCTTACCCTTATGAAGAAGGGTTCCGGAGGAGCAAGTTTTGCCTCCATGTGAGAGGCTATGAGGTCAACACTGCGAGAGTGAGTGATGCCATACACTACGGCTGCATTCCTGTTATAATTTCCAATCACTATGAGCTTCCGTTCGCTAATGTGCTGGACTGGAGCAAGTTCTCAGTTATTGTCAACAATGGCGAGGTTGCCTTGTTGAAGAAGACATTGTTGTCGATAACAAGACAATCCTACGTGAGATTGTACCGCAATTTGATCAAGGTTCGTAGGCATTTTGTTTGGCACGAGACTCCCCGAGGTTACGACTCCTTCCACATGACTGCTTACCAGCTGTGGCTCAAAAGGAGCTCCTTGCGTCTGTCGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

419

Amino Acids

47.88

Weight (kDa)

9.69

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 78 - 366 2.6e-55 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016310)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g21950
malus_domestica MD13G1135600.v1.1 MD16G1131200.v1.1
prunus_persica Prupe.1G209700_v2.0.a1
pyrus_communis pycom13g11830
rosa_chinensis RchiOBHm_Chr4g0428151
rosa_laevigata RLG00000007175
rosa_multiflora Rmu_sc0004940.1_g000009 Rmu_sc0009599.1_g000009
rosa_roxburghii Rroxscaffold_5G00369880
rosa_rugosa Rorug04G0223000
rosa_samantha Rh4BG285800 Rh4CG301100 Rh4DG282800
rosa_wichuraiana Rw4G024340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 995
AasI GACNNNNNNGTC 2 cut(s) 482, 1099
Acc36I ACCTGC 1 cut(s) 712
AccB7I CCANNNNNTGG 1 cut(s) 145
AccII CGCG 1 cut(s) 733
AccIII TCCGGA 2 cut(s) 791, 903
AclWI GGATC 4 cut(s) 269, 567, 580, 646
AcoI YGGCCR 2 cut(s) 538, 728
AcuI CTGAAG 2 cut(s) 44, 349
AcyI GRCGYC 1 cut(s) 196
AfaI GTAC 3 cut(s) 7, 14, 1133
AfiI CCNNNNNNNGG 4 cut(s) 96, 145, 176, 353
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 5 cut(s) 43, 343, 382, 550, 1087
AjnI CCWGG 1 cut(s) 57
Alw21I GWGCWC 2 cut(s) 375, 1238
Alw26I GTCTC 4 cut(s) 88, 203, 537, 1169
AlwI GGATC 4 cut(s) 269, 567, 580, 646
Ama87I CYCGRG 2 cut(s) 480, 1182
Aor13HI TCCGGA 2 cut(s) 791, 903
AoxI GGCC 6 cut(s) 178, 538, 615, 728, 734, 1251
ApeKI GCWGC 4 cut(s) 52, 67, 637, 981
AspLEI GCGC 2 cut(s) 67, 76
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 2 cut(s) 634, 870
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 2 cut(s) 480, 1182
BamHI GGATCC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 1238
BauI CACGAG 1 cut(s) 1172
BbsI GAAGAC 2 cut(s) 310, 1097
Bbv12I GWGCWC 2 cut(s) 375, 1238
BbvI GCAGC 4 cut(s) 39, 54, 624, 968
BccI CCATC 1 cut(s) 113
BceAI ACGGC 3 cut(s) 299, 518, 994
BciT130I CCWGG 1 cut(s) 59
BclI TGATCA 1 cut(s) 1143
BcnI CCSGG 2 cut(s) 634, 870
BcoDI GTCTC 4 cut(s) 88, 203, 537, 1169
BfaI CTAG 1 cut(s) 768
BfoI RGCGCY 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 712
BglII AGATCT 1 cut(s) 384
Bme1390I CCNGG 3 cut(s) 59, 634, 870
BmeT110I CYCGRG 2 cut(s) 480, 1182
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 574, 902
BmrFI CCNGG 3 cut(s) 59, 634, 870
BmsI GCATC 1 cut(s) 955
BoxI GACNNNNGTC 1 cut(s) 195
BpiI GAAGAC 2 cut(s) 310, 1097
BplI GAGNNNNNCTC 4 cut(s) 210, 242, 762, 794
BpmI CTGGAG 5 cut(s) 101, 153, 382, 655, 1060
BpuMI CCSGG 2 cut(s) 634, 870
Bsa29I ATCGAT 1 cut(s) 831
BsaAI YACGTR 1 cut(s) 1123
BsaHI GRCGYC 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 731, 1183
BsaWI WCCGGW 2 cut(s) 791, 903
Bsc4I CCNNNNNNNGG 4 cut(s) 96, 145, 176, 353
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 3 cut(s) 118, 197, 1043
BseAI TCCGGA 2 cut(s) 791, 903
BseBI CCWGG 1 cut(s) 59
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 2 cut(s) 731, 1183
BseLI CCNNNNNNNGG 4 cut(s) 96, 145, 176, 353
BseMII CTCAG 1 cut(s) 1065
BseNI ACTGG 3 cut(s) 118, 197, 1043
BseX3I CGGCCG 1 cut(s) 538
BseXI GCAGC 4 cut(s) 39, 54, 624, 968
BsgI GTGCAG 1 cut(s) 623
Bsh1236I CGCG 1 cut(s) 733
Bsh1285I CGRYCG 1 cut(s) 541
BshFI GGCC 6 cut(s) 180, 540, 617, 730, 736, 1253
BshVI ATCGAT 1 cut(s) 831
BsiEI CGRYCG 1 cut(s) 541
BsiHKAI GWGCWC 2 cut(s) 375, 1238
BsiHKCI CYCGRG 2 cut(s) 480, 1182
BsiSI CCGG 5 cut(s) 49, 633, 792, 870, 904
BslI CCNNNNNNNGG 4 cut(s) 96, 145, 176, 353
BsmAI GTCTC 4 cut(s) 88, 203, 537, 1169
BsmBI CGTCTC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 984
BsnI GGCC 6 cut(s) 180, 540, 617, 730, 736, 1253
BsoBI CYCGRG 2 cut(s) 480, 1182
Bsp1286I GDGCHC 2 cut(s) 375, 1238
Bsp13I TCCGGA 2 cut(s) 791, 903
Bsp143I GATC 6 cut(s) 274, 384, 572, 651, 828, 1143
BspANI GGCC 6 cut(s) 180, 540, 617, 730, 736, 1253
BspCNI CTCAG 1 cut(s) 1064
BspDI ATCGAT 1 cut(s) 831
BspEI TCCGGA 2 cut(s) 791, 903
BspFNI CGCG 1 cut(s) 733
BspLI GGNNCC 2 cut(s) 574, 902
BspMI ACCTGC 1 cut(s) 712
BspPI GGATC 4 cut(s) 269, 567, 580, 646
BsrFI RCCGGY 1 cut(s) 48
BsrI ACTGG 3 cut(s) 118, 197, 1043
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 731, 1183
BssMI GATC 6 cut(s) 274, 384, 572, 651, 828, 1143
BssNI GRCGYC 1 cut(s) 196
BssSI CACGAG 1 cut(s) 1172
Bst2BI CACGAG 1 cut(s) 1172
Bst2UI CCWGG 1 cut(s) 59
Bst6I CTCTTC 3 cut(s) 168, 206, 443
BstACI GRCGYC 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 918
BstBAI YACGTR 1 cut(s) 1123
BstC8I GCNNGC 5 cut(s) 50, 72, 78, 371, 592
BstDEI CTNAG 1 cut(s) 1051
BstDSI CCRYGG 1 cut(s) 731
BstFNI CGCG 1 cut(s) 733
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 2 cut(s) 67, 76
BstKTI GATC 6 cut(s) 277, 387, 575, 654, 831, 1146
BstMAI GTCTC 4 cut(s) 88, 203, 537, 1169
BstMBI GATC 6 cut(s) 274, 384, 572, 651, 828, 1143
BstMCI CGRYCG 1 cut(s) 541
BstMWI GCNNNNNNNGC 9 cut(s) 71, 73, 299, 308, 629, 672, 727, 742, 918
BstNI CCWGG 1 cut(s) 59
BstNSI RCATGY 3 cut(s) 379, 632, 767
BstPAI GACNNNNGTC 1 cut(s) 195
BstSCI CCNGG 3 cut(s) 57, 632, 868
BstUI CGCG 1 cut(s) 733
BstV1I GCAGC 4 cut(s) 39, 54, 624, 968
BstV2I GAAGAC 2 cut(s) 310, 1097
BstX2I RGATCY 2 cut(s) 384, 572
BstYI RGATCY 2 cut(s) 384, 572
BstZI CGGCCG 1 cut(s) 538
Bsu15I ATCGAT 1 cut(s) 831
BsuRI GGCC 6 cut(s) 180, 540, 617, 730, 736, 1253
BsuTUI ATCGAT 1 cut(s) 831
BtgI CCRYGG 1 cut(s) 731
BtsI GCAGTG 2 cut(s) 525, 948
BtsIMutI CAGTG 3 cut(s) 20, 525, 948
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 5 cut(s) 50, 72, 78, 371, 592
CfoI GCGC 2 cut(s) 67, 76
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 179
Cfr42I CCGCGG 1 cut(s) 734
ClaI ATCGAT 1 cut(s) 831
CseI GACGC 2 cut(s) 185, 1232
Csp6I GTAC 3 cut(s) 6, 13, 1132
CviAII CATG 6 cut(s) 96, 376, 629, 764, 926, 1204
CviQI GTAC 3 cut(s) 6, 13, 1132
DdeI CTNAG 1 cut(s) 1051
DpnI GATC 6 cut(s) 276, 386, 574, 653, 830, 1145
DpnII GATC 6 cut(s) 274, 384, 572, 651, 828, 1143
DrdI GACNNNNNNGTC 2 cut(s) 482, 1099
DseDI GACNNNNNNGTC 2 cut(s) 482, 1099
EaeI YGGCCR 2 cut(s) 538, 728
EagI CGGCCG 1 cut(s) 538
Eam1104I CTCTTC 3 cut(s) 168, 206, 443
EarI CTCTTC 3 cut(s) 168, 206, 443
EciI GGCGGA 2 cut(s) 79, 280
Ecl136II GAGCTC 1 cut(s) 1236
EclXI CGGCCG 1 cut(s) 538
Eco24I GRGCYC 1 cut(s) 1238
Eco52I CGGCCG 1 cut(s) 538
Eco53kI GAGCTC 1 cut(s) 1236
Eco57I CTGAAG 2 cut(s) 44, 349
Eco88I CYCGRG 2 cut(s) 480, 1182
EcoICRI GAGCTC 1 cut(s) 1236
EcoO109I RGGNCCY 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 1238
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 6 cut(s) 99, 379, 632, 767, 929, 1207
FatI CATG 6 cut(s) 95, 375, 628, 763, 925, 1203
FbaI TGATCA 1 cut(s) 1143
FriOI GRGCYC 1 cut(s) 1238
FspBI CTAG 1 cut(s) 768
GlaI GCGC 2 cut(s) 66, 75
GsuI CTGGAG 5 cut(s) 101, 153, 382, 655, 1060
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 6 cut(s) 180, 540, 617, 730, 736, 1253
HapII CCGG 5 cut(s) 49, 633, 792, 870, 904
HgaI GACGC 2 cut(s) 185, 1232
HhaI GCGC 2 cut(s) 67, 76
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 6 cut(s) 99, 379, 632, 767, 929, 1207
Hin6I GCGC 2 cut(s) 65, 74
HinP1I GCGC 2 cut(s) 65, 74
HincII GTYRAC 2 cut(s) 946, 1063
HindII GTYRAC 2 cut(s) 946, 1063
HinfI GANTC 6 cut(s) 173, 483, 494, 798, 1177, 1193
HpaII CCGG 5 cut(s) 49, 633, 792, 870, 904
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 4 cut(s) 487, 784, 946, 1063
Hpy188I TCNGA 7 cut(s) 127, 218, 274, 356, 493, 577, 684
Hpy188III TCNNGA 7 cut(s) 170, 238, 382, 556, 570, 792, 904
Hpy8I GTNNAC 4 cut(s) 487, 784, 946, 1063
Hpy99I CGWCG 2 cut(s) 506, 539
HpyAV CCTTC 6 cut(s) 244, 291, 316, 349, 890, 1207
HpyCH4IV ACGT 2 cut(s) 246, 1122
HpyCH4V TGCA 4 cut(s) 609, 640, 745, 984
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 73, 299, 308, 629, 672, 727, 742, 918
HpyF3I CTNAG 1 cut(s) 1051
HpySE526I ACGT 2 cut(s) 246, 1122
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 6 cut(s) 99, 379, 632, 767, 929, 1207
HspAI GCGC 2 cut(s) 65, 74
Kpn2I TCCGGA 2 cut(s) 791, 903
KroI GCCGGC 1 cut(s) 48
KroNI GCCGGC 1 cut(s) 50
Ksp22I TGATCA 1 cut(s) 1143
KspI CCGCGG 1 cut(s) 734
Kzo9I GATC 6 cut(s) 274, 384, 572, 651, 828, 1143
LmnI GCTCC 9 cut(s) 60, 163, 231, 407, 671, 909, 1041, 1233, 1241
Lsp1109I GCAGC 4 cut(s) 39, 54, 624, 968
LweI GCATC 1 cut(s) 955
MaeI CTAG 1 cut(s) 768
MaeII ACGT 2 cut(s) 246, 1122
MaeIII GTNAC 4 cut(s) 409, 596, 694, 1187
MalI GATC 6 cut(s) 276, 386, 574, 653, 830, 1145
MboI GATC 6 cut(s) 274, 384, 572, 651, 828, 1143
MflI RGATCY 2 cut(s) 384, 572
MhlI GDGCHC 2 cut(s) 375, 1238
MluCI AATT 4 cut(s) 142, 259, 996, 1138
MlyI GAGTC 4 cut(s) 492, 503, 1171, 1187
MmeI TCCRAC 2 cut(s) 288, 600
MroI TCCGGA 2 cut(s) 791, 903
MroNI GCCGGC 1 cut(s) 48
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 3 cut(s) 645, 705, 854
MspA1I CMGCKG 3 cut(s) 733, 826, 1219
MspI CCGG 5 cut(s) 49, 633, 792, 870, 904
MspR9I CCNGG 3 cut(s) 59, 634, 870
Mva1269I GAATGC 1 cut(s) 984
MvaI CCWGG 1 cut(s) 59
MvnI CGCG 1 cut(s) 733
MwoI GCNNNNNNNGC 9 cut(s) 71, 73, 299, 308, 629, 672, 727, 742, 918
NaeI GCCGGC 1 cut(s) 50
NciI CCSGG 2 cut(s) 634, 870
NdeII GATC 6 cut(s) 274, 384, 572, 651, 828, 1143
NgoMIV GCCGGC 1 cut(s) 48
NlaIII CATG 6 cut(s) 99, 379, 632, 767, 929, 1207
NlaIV GGNNCC 2 cut(s) 574, 902
NmeAIII GCCGAG 2 cut(s) 532, 566
NmuCI GTSAC 2 cut(s) 409, 596
NspI RCATGY 3 cut(s) 379, 632, 767
PciI ACATGT 1 cut(s) 375
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PctI GAATGC 1 cut(s) 984
PdiI GCCGGC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 173, 798
PflMI CCANNNNNTGG 1 cut(s) 145
PleI GAGTC 4 cut(s) 491, 502, 1171, 1187
PpsI GAGTC 4 cut(s) 491, 502, 1171, 1187
Ppu21I YACGTR 1 cut(s) 1123
PscI ACATGT 1 cut(s) 375
PshAI GACNNNNGTC 1 cut(s) 195
PsiI TTATAA 1 cut(s) 995
Psp124BI GAGCTC 1 cut(s) 1238
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 574, 902
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 2 cut(s) 384, 572
PvuII CAGCTG 2 cut(s) 826, 1219
RsaI GTAC 3 cut(s) 7, 14, 1133
RsaNI GTAC 3 cut(s) 6, 13, 1132
RseI CAYNNNNRTG 3 cut(s) 645, 705, 854
SacI GAGCTC 1 cut(s) 1238
SacII CCGCGG 1 cut(s) 734
SaqAI TTAA 1 cut(s) 459
Sau3AI GATC 6 cut(s) 274, 384, 572, 651, 828, 1143
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 4 cut(s) 492, 503, 1171, 1187
ScrFI CCNGG 3 cut(s) 59, 634, 870
SduI GDGCHC 2 cut(s) 375, 1238
SfaNI GCATC 1 cut(s) 955
Sfr303I CCGCGG 1 cut(s) 734
SgrBI CCGCGG 1 cut(s) 734
SmiMI CAYNNNNRTG 3 cut(s) 645, 705, 854
Sse9I AATT 4 cut(s) 142, 259, 996, 1138
SspMI CTAG 1 cut(s) 768
SstI GAGCTC 1 cut(s) 1238
StyD4I CCNGG 3 cut(s) 57, 632, 868
TaiI ACGT 2 cut(s) 249, 1125
TaqI TCGA 4 cut(s) 809, 831, 853, 1103
TasI AATT 4 cut(s) 142, 259, 996, 1138
TatI WGTACW 1 cut(s) 12
TauI GCSGC 9 cut(s) 65, 209, 314, 533, 620, 623, 721, 733, 736
TfiI GAWTC 2 cut(s) 173, 798
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 3 cut(s) 27, 532, 955
TseFI GTSAC 2 cut(s) 409, 596
TseI GCWGC 4 cut(s) 52, 67, 637, 981
Tsp45I GTSAC 2 cut(s) 409, 596
TspDTI ATGAA 1 cut(s) 906
TspGWI ACGGA 3 cut(s) 445, 490, 1008
TspRI CASTG 3 cut(s) 27, 532, 955
Van91I CCANNNNNTGG 1 cut(s) 145
XceI RCATGY 3 cut(s) 379, 632, 767
XspI CTAG 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.