FvH4_4g22230

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011556
Physical Location & Seq
Forward (+)
25108328 .. 25111515
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22230.t1

Sequence Viewer

Length: 1323 bp
ATGAGAAAAGACGACGGCGACGACTTGCCGGACGGAATATACGTGCATGCTCAGCATTCCAACTCCGACCGCCGGATTATGGACACCCCTGGCCCGTCCCTCAGAGTTTATCAAGTTTGGAAAGGAAACAATAAATTTTGCTTTAATGGCAGACTGATGTTTGGTCCGGATGGCAAGTCATTGATTCTTACTATGTCGCTGATTGTGGTTCCGGTGATCTTGTTTTGTTCTTTCGTTTCTAGTGGACTAGTTCATATGTACCCCCACCATATTGGCAATTGTATTGTGGCTATAGCTGTCGTATGCGCAATCTATGTTGTTAGTCTTCTCTTCATTACAGCTTCAAGAGATCCTGGTGTTATTCCTCGAAGTCTGCATCCTCCTGAACCAGAAGATGATGGTTATATGTCTAGTATGTCATCTGAGTGGCCGGGAAGTCAGAATGGACCACCGACTGTACCACCCACAAAAGATGTGATGGTTAATGGCTCAATTGTCAAGGTCAAATACTGCCATACATGCATGCTATATCGTCCGCCCCGATGCTCGCACTGCTCTATATGCAACAATTGTGTGGAGCGTTTTGATCACCATTGCCCATGGGTGGGGCAATGTATTGGGAGAAGGAATTATCGATTCTTTTTCATGTTTGTGGTCTCCACAGCCATGCTGTGCATCTATGTCTTTGCCTTCTGCTGGGTAAACATCATGAAAATAATGGATGCTAACCATTGCAATCTCTGGAGTGCTTTATTGAAGTCACCAGTTTCAGGAATTCTAATTCTGTATACATTTGGAGCTGCTTGGTTTGTTGGAGGTCTCAGCGGCTTCCATCTATATTTGATCTGCACCAATCAGACAACATATGAGAACTTCCGGTATCGGTACACTATCAAGATGAACCCGTATAATCGTGGGTGTTTTGAAAATATTGCGGAAGTCTTCTGCTCTAGGATTCCTCCATCTAAACATAACTTCGGGGAAAAGGTTAAGGTCGATTCTGTCTACACCAATTCAACAATTTCATTAGGTCATCCCATGAGCCCTGAGATGCCTAAAACAAGATATGACATAGAGATGGGAAAACGTCAAGCTGTGGCGGCTGAAGATCTTGAGGATCTACAGAGTCAGATTGAAACTGTTGTTGGATTGGATAGGTTGGAGAGGTGTGGAACTCAGCCGAGACATTCAAATTCAAACTGGGATCAGAAAGCCAACTGGCCATCCTCACCTGATATACAAATGTTGGCTGCTGAGTTCGGAATGGAAGACGGTTCAACGACAAGCAGGCAGAAGATTGGAGGACCTAATGACCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

441

Amino Acids

49.58

Weight (kDa)

7.81

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 169 - 293 3.3e-37 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 307
AccI GTMKAC 2 cut(s) 788, 1005
AccIII TCCGGA 1 cut(s) 166
AciI CCGC 5 cut(s) 70, 536, 825, 935, 1100
AclWI GGATC 3 cut(s) 344, 1125, 1212
AcoI YGGCCR 2 cut(s) 428, 1220
AcsI RAATTY 3 cut(s) 134, 774, 1192
AcuI CTGAAG 1 cut(s) 1125
AfaI GTAC 3 cut(s) 260, 459, 887
AfiI CCNNNNNNNGG 6 cut(s) 72, 79, 604, 605, 696, 770
AgsI TTSAA 8 cut(s) 345, 757, 926, 1017, 1136, 1191, 1197, 1278
AhlI ACTAGT 1 cut(s) 247
AjnI CCWGG 2 cut(s) 88, 352
AjuI GAANNNNNNNTTGG 2 cut(s) 1128, 1160
AluBI AGCT 4 cut(s) 296, 341, 800, 1094
AluI AGCT 4 cut(s) 296, 341, 800, 1094
Alw26I GTCTC 3 cut(s) 661, 824, 1177
AlwI GGATC 3 cut(s) 344, 1125, 1212
Aor13HI TCCGGA 1 cut(s) 166
AoxI GGCC 3 cut(s) 91, 428, 1220
ApeKI GCWGC 2 cut(s) 800, 1250
ApoI RAATTY 3 cut(s) 134, 774, 1192
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 4 cut(s) 92, 164, 446, 1304
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 4 cut(s) 226, 581, 753, 1221
AvaII GGWCC 3 cut(s) 164, 446, 1304
BalI TGGCCA 1 cut(s) 1222
BanII GRGCYC 1 cut(s) 1046
BbsI GAAGAC 3 cut(s) 317, 934, 1275
BbvI GCAGC 2 cut(s) 787, 1237
BccI CCATC 7 cut(s) 164, 392, 472, 840, 970, 1072, 1231
BceAI ACGGC 1 cut(s) 31
BciT130I CCWGG 2 cut(s) 90, 354
BclI TGATCA 1 cut(s) 586
BcnI CCSGG 1 cut(s) 432
BcoDI GTCTC 3 cut(s) 661, 824, 1177
BcuI ACTAGT 1 cut(s) 247
BfaI CTAG 4 cut(s) 240, 248, 411, 951
BfmI CTRYAG 2 cut(s) 291, 1121
BglII AGATCT 1 cut(s) 1108
BisI GCNGC 4 cut(s) 801, 826, 1101, 1251
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 4 cut(s) 802, 827, 1102, 1252
Bme1390I CCNGG 3 cut(s) 90, 354, 432
Bme18I GGWCC 3 cut(s) 164, 446, 1304
BmgT120I GGNCC 4 cut(s) 92, 164, 446, 1304
BmiI GGNNCC 1 cut(s) 210
BmrFI CCNGG 3 cut(s) 90, 354, 432
BmrI ACTGGG 1 cut(s) 1210
BmsI GCATC 5 cut(s) 385, 533, 684, 712, 1041
BmuI ACTGGG 1 cut(s) 1210
BpiI GAAGAC 3 cut(s) 317, 934, 1275
BpmI CTGGAG 1 cut(s) 763
Bpu1102I GCTNAGC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 1133
BpuMI CCSGG 1 cut(s) 432
Bsa29I ATCGAT 1 cut(s) 634
BsaAI YACGTR 1 cut(s) 43
BsaI GGTCTC 2 cut(s) 661, 824
BsaJI CCNNGG 2 cut(s) 88, 599
BsaWI WCCGGW 3 cut(s) 166, 211, 876
Bsc4I CCNNNNNNNGG 6 cut(s) 72, 79, 604, 605, 696, 770
Bse1I ACTGG 3 cut(s) 764, 1205, 1223
Bse3DI GCAATG 3 cut(s) 592, 617, 730
BseAI TCCGGA 1 cut(s) 166
BseBI CCWGG 2 cut(s) 90, 354
BseCI ATCGAT 1 cut(s) 634
BseDI CCNNGG 2 cut(s) 88, 599
BseGI GGATG 5 cut(s) 175, 376, 727, 1033, 1223
BseLI CCNNNNNNNGG 6 cut(s) 72, 79, 604, 605, 696, 770
BseMI GCAATG 3 cut(s) 592, 617, 730
BseMII CTCAG 7 cut(s) 65, 115, 414, 835, 1038, 1190, 1245
BseNI ACTGG 3 cut(s) 764, 1205, 1223
BseXI GCAGC 2 cut(s) 787, 1237
BseYI CCCAGC 1 cut(s) 696
BsgI GTGCAG 1 cut(s) 832
Bsh1285I CGRYCG 1 cut(s) 70
BshFI GGCC 3 cut(s) 93, 430, 1222
BshVI ATCGAT 1 cut(s) 634
BsiEI CGRYCG 1 cut(s) 70
BsiSI CCGG 6 cut(s) 29, 73, 167, 212, 431, 877
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 6 cut(s) 72, 79, 604, 605, 696, 770
BsmAI GTCTC 3 cut(s) 661, 824, 1177
BsmFI GGGAC 1 cut(s) 82
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 3 cut(s) 93, 430, 1222
Bso31I GGTCTC 2 cut(s) 661, 824
Bsp1286I GDGCHC 1 cut(s) 1046
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 7 cut(s) 216, 349, 586, 843, 1108, 1117, 1204
Bsp1720I GCTNAGC 1 cut(s) 51
Bsp19I CCATGG 1 cut(s) 599
BspACI CCGC 5 cut(s) 70, 536, 825, 935, 1100
BspANI GGCC 3 cut(s) 93, 430, 1222
BspCNI CTCAG 7 cut(s) 64, 114, 415, 834, 1039, 1189, 1246
BspDI ATCGAT 1 cut(s) 634
BspEI TCCGGA 1 cut(s) 166
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 1 cut(s) 210
BspPI GGATC 3 cut(s) 344, 1125, 1212
BspTNI GGTCTC 2 cut(s) 661, 824
BsrDI GCAATG 3 cut(s) 592, 617, 730
BsrI ACTGG 3 cut(s) 764, 1205, 1223
BssECI CCNNGG 2 cut(s) 88, 599
BssMI GATC 7 cut(s) 216, 349, 586, 843, 1108, 1117, 1204
BssNAI GTATAC 1 cut(s) 789
BssT1I CCWWGG 1 cut(s) 599
Bst1107I GTATAC 1 cut(s) 789
Bst2UI CCWGG 2 cut(s) 90, 354
Bst4CI ACNGT 3 cut(s) 457, 1141, 1274
Bst6I CTCTTC 1 cut(s) 335
BstBAI YACGTR 1 cut(s) 43
BstC8I GCNNGC 4 cut(s) 48, 524, 548, 1289
BstDEI CTNAG 7 cut(s) 51, 101, 423, 821, 1047, 1176, 1254
BstDSI CCRYGG 1 cut(s) 599
BstF5I GGATG 5 cut(s) 175, 376, 727, 1033, 1223
BstHHI GCGC 1 cut(s) 308
BstKTI GATC 7 cut(s) 219, 352, 589, 846, 1111, 1120, 1207
BstMAI GTCTC 3 cut(s) 661, 824, 1177
BstMBI GATC 7 cut(s) 216, 349, 586, 843, 1108, 1117, 1204
BstMCI CGRYCG 1 cut(s) 70
BstMWI GCNNNNNNNGC 6 cut(s) 52, 147, 519, 552, 561, 1100
BstNI CCWGG 2 cut(s) 90, 354
BstNSI RCATGY 3 cut(s) 50, 522, 526
BstSCI CCNGG 3 cut(s) 88, 352, 430
BstSFI CTRYAG 2 cut(s) 291, 1121
BstV1I GCAGC 2 cut(s) 787, 1237
BstV2I GAAGAC 3 cut(s) 317, 934, 1275
BstX2I RGATCY 3 cut(s) 349, 1108, 1117
BstXI CCANNNNNNTGG 1 cut(s) 272
BstYI RGATCY 3 cut(s) 349, 1108, 1117
BstZ17I GTATAC 1 cut(s) 789
Bsu15I ATCGAT 1 cut(s) 634
BsuRI GGCC 3 cut(s) 93, 430, 1222
BsuTUI ATCGAT 1 cut(s) 634
BtgI CCRYGG 1 cut(s) 599
BtsCI GGATG 5 cut(s) 175, 376, 727, 1033, 1223
BtsI GCAGTG 1 cut(s) 550
BtsIMutI CAGTG 1 cut(s) 550
Cac8I GCNNGC 4 cut(s) 48, 524, 548, 1289
CciI TCATGA 1 cut(s) 708
CfoI GCGC 1 cut(s) 308
Cfr13I GGNCC 4 cut(s) 92, 164, 446, 1304
ClaI ATCGAT 1 cut(s) 634
Csp6I GTAC 3 cut(s) 259, 458, 886
CviAII CATG 8 cut(s) 47, 519, 523, 600, 646, 667, 709, 1039
CviQI GTAC 3 cut(s) 259, 458, 886
DdeI CTNAG 7 cut(s) 51, 101, 423, 821, 1047, 1176, 1254
DpnI GATC 7 cut(s) 218, 351, 588, 845, 1110, 1119, 1206
DpnII GATC 7 cut(s) 216, 349, 586, 843, 1108, 1117, 1204
EaeI YGGCCR 2 cut(s) 428, 1220
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
EciI GGCGGA 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 599
Eco24I GRGCYC 1 cut(s) 1046
Eco31I GGTCTC 2 cut(s) 661, 824
Eco47I GGWCC 3 cut(s) 164, 446, 1304
Eco57I CTGAAG 1 cut(s) 1125
EcoO109I RGGNCCY 1 cut(s) 1304
EcoRI GAATTC 1 cut(s) 774
EcoRII CCWGG 2 cut(s) 88, 352
EcoT14I CCWWGG 1 cut(s) 599
EcoT22I ATGCAT 1 cut(s) 524
EcoT38I GRGCYC 1 cut(s) 1046
ErhI CCWWGG 1 cut(s) 599
FaeI CATG 8 cut(s) 50, 522, 526, 603, 649, 670, 712, 1042
FaqI GGGAC 1 cut(s) 82
FatI CATG 8 cut(s) 46, 518, 522, 599, 645, 666, 708, 1038
FauNDI CATATG 2 cut(s) 255, 865
FbaI TGATCA 1 cut(s) 586
FblI GTMKAC 2 cut(s) 788, 1005
Fnu4HI GCNGC 4 cut(s) 801, 826, 1101, 1251
FokI GGATG 5 cut(s) 182, 363, 734, 1020, 1210
FriOI GRGCYC 1 cut(s) 1046
Fsp4HI GCNGC 4 cut(s) 801, 826, 1101, 1251
FspBI CTAG 4 cut(s) 240, 248, 411, 951
FspI TGCGCA 1 cut(s) 307
GlaI GCGC 1 cut(s) 307
GluI GCNGC 4 cut(s) 801, 826, 1101, 1251
GsaI CCCAGC 1 cut(s) 700
GsuI CTGGAG 1 cut(s) 763
HaeIII GGCC 3 cut(s) 93, 430, 1222
HapII CCGG 6 cut(s) 29, 73, 167, 212, 431, 877
HhaI GCGC 1 cut(s) 308
Hin1II CATG 8 cut(s) 50, 522, 526, 603, 649, 670, 712, 1042
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HinfI GANTC 5 cut(s) 184, 636, 955, 998, 1126
HpaII CCGG 6 cut(s) 29, 73, 167, 212, 431, 877
HphI GGTGA 4 cut(s) 226, 581, 753, 1221
Hpy166II GTNNAC 5 cut(s) 245, 703, 789, 888, 1006
Hpy188I TCNGA 8 cut(s) 67, 104, 424, 441, 858, 1131, 1209, 1262
Hpy188III TCNNGA 8 cut(s) 167, 345, 383, 709, 742, 771, 895, 1112
Hpy8I GTNNAC 5 cut(s) 245, 703, 789, 888, 1006
Hpy99I CGWCG 2 cut(s) 17, 23
HpyAV CCTTC 2 cut(s) 618, 700
HpyCH4III ACNGT 3 cut(s) 457, 1141, 1274
HpyCH4IV ACGT 2 cut(s) 42, 1087
HpyCH4V TGCA 7 cut(s) 46, 376, 522, 564, 675, 735, 849
HpyF10VI GCNNNNNNNGC 6 cut(s) 52, 147, 519, 552, 561, 1100
HpyF3I CTNAG 7 cut(s) 51, 101, 423, 821, 1047, 1176, 1254
HpySE526I ACGT 2 cut(s) 42, 1087
Hsp92II CATG 8 cut(s) 50, 522, 526, 603, 649, 670, 712, 1042
HspAI GCGC 1 cut(s) 306
Kpn2I TCCGGA 1 cut(s) 166
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 7 cut(s) 216, 349, 586, 843, 1108, 1117, 1204
LmnI GCTCC 2 cut(s) 577, 797
Lsp1109I GCAGC 2 cut(s) 787, 1237
LweI GCATC 5 cut(s) 385, 533, 684, 712, 1041
MaeI CTAG 4 cut(s) 240, 248, 411, 951
MaeII ACGT 2 cut(s) 42, 1087
MaeIII GTNAC 1 cut(s) 759
MalI GATC 7 cut(s) 218, 351, 588, 845, 1110, 1119, 1206
MboI GATC 7 cut(s) 216, 349, 586, 843, 1108, 1117, 1204
MboII GAAGA 7 cut(s) 317, 322, 404, 934, 1118, 1280, 1306
MfeI CAATTG 3 cut(s) 277, 492, 568
MflI RGATCY 3 cut(s) 349, 1108, 1117
MhlI GDGCHC 1 cut(s) 1046
MlsI TGGCCA 1 cut(s) 1222
MluNI TGGCCA 1 cut(s) 1222
MlyI GAGTC 1 cut(s) 1135
MmeI TCCRAC 5 cut(s) 84, 90, 793, 1126, 1140
MnlI CCTC 9 cut(s) 110, 375, 390, 809, 969, 1108, 1158, 1237, 1295
Mox20I TGGCCA 1 cut(s) 1222
Mph1103I ATGCAT 1 cut(s) 524
MroI TCCGGA 1 cut(s) 166
MscI TGGCCA 1 cut(s) 1222
MseI TTAA 3 cut(s) 144, 483, 990
MslI CAYNNNNRTG 4 cut(s) 424, 650, 665, 1076
Msp20I TGGCCA 1 cut(s) 1222
MspA1I CMGCKG 1 cut(s) 825
MspI CCGG 6 cut(s) 29, 73, 167, 212, 431, 877
MspR9I CCNGG 3 cut(s) 90, 354, 432
MunI CAATTG 3 cut(s) 277, 492, 568
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 2 cut(s) 90, 354
MwoI GCNNNNNNNGC 6 cut(s) 52, 147, 519, 552, 561, 1100
NciI CCSGG 1 cut(s) 432
NcoI CCATGG 1 cut(s) 599
NdeI CATATG 2 cut(s) 255, 865
NdeII GATC 7 cut(s) 216, 349, 586, 843, 1108, 1117, 1204
NlaIII CATG 8 cut(s) 50, 522, 526, 603, 649, 670, 712, 1042
NlaIV GGNNCC 1 cut(s) 210
NmeAIII GCCGAG 1 cut(s) 1206
NmuCI GTSAC 1 cut(s) 759
NsbI TGCGCA 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 524
NspI RCATGY 3 cut(s) 50, 522, 526
PaeI GCATGC 2 cut(s) 50, 526
PagI TCATGA 1 cut(s) 708
PcsI WCGNNNNNNNCGW 3 cut(s) 18, 39, 538
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 4 cut(s) 184, 636, 955, 998
PkrI GCNGC 4 cut(s) 802, 827, 1102, 1252
PleI GAGTC 1 cut(s) 1134
PpsI GAGTC 1 cut(s) 1134
Ppu21I YACGTR 1 cut(s) 43
PpuMI RGGWCCY 1 cut(s) 1304
Psp5II RGGWCCY 1 cut(s) 1304
Psp6I CCWGG 2 cut(s) 88, 352
PspFI CCCAGC 1 cut(s) 696
PspGI CCWGG 2 cut(s) 88, 352
PspN4I GGNNCC 1 cut(s) 210
PspPI GGNCC 4 cut(s) 92, 164, 446, 1304
PspPPI RGGWCCY 1 cut(s) 1304
PsuI RGATCY 3 cut(s) 349, 1108, 1117
RsaI GTAC 3 cut(s) 260, 459, 887
RsaNI GTAC 3 cut(s) 259, 458, 886
RseI CAYNNNNRTG 4 cut(s) 424, 650, 665, 1076
SaqAI TTAA 3 cut(s) 144, 483, 990
SatI GCNGC 4 cut(s) 801, 826, 1101, 1251
Sau3AI GATC 7 cut(s) 216, 349, 586, 843, 1108, 1117, 1204
Sau96I GGNCC 4 cut(s) 92, 164, 446, 1304
SchI GAGTC 1 cut(s) 1135
ScrFI CCNGG 3 cut(s) 90, 354, 432
SduI GDGCHC 1 cut(s) 1046
SfaNI GCATC 5 cut(s) 385, 533, 684, 712, 1041
SfcI CTRYAG 2 cut(s) 291, 1121
SinI GGWCC 3 cut(s) 164, 446, 1304
SmiMI CAYNNNNRTG 4 cut(s) 424, 650, 665, 1076
SmlI CTYRAG 1 cut(s) 1112
SmoI CTYRAG 1 cut(s) 1112
SpeI ACTAGT 1 cut(s) 247
SphI GCATGC 2 cut(s) 50, 526
SsiI CCGC 5 cut(s) 70, 536, 825, 935, 1100
SspI AATATT 1 cut(s) 931
SspMI CTAG 4 cut(s) 240, 248, 411, 951
StyD4I CCNGG 3 cut(s) 88, 352, 430
StyI CCWWGG 1 cut(s) 599
TaaI ACNGT 3 cut(s) 457, 1141, 1274
TaiI ACGT 2 cut(s) 45, 1090
TaqI TCGA 3 cut(s) 367, 634, 996
TauI GCSGC 2 cut(s) 828, 1103
TfiI GAWTC 4 cut(s) 184, 636, 955, 998
Tru1I TTAA 3 cut(s) 144, 483, 990
Tru9I TTAA 3 cut(s) 144, 483, 990
TscAI CASTG 1 cut(s) 557
TseFI GTSAC 1 cut(s) 759
TseI GCWGC 2 cut(s) 800, 1250
Tsp45I GTSAC 1 cut(s) 759
TspDTI ATGAA 6 cut(s) 242, 322, 634, 725, 914, 1014
TspGWI ACGGA 1 cut(s) 48
TspRI CASTG 1 cut(s) 557
VpaK11BI GGWCC 3 cut(s) 164, 446, 1304
XapI RAATTY 3 cut(s) 134, 774, 1192
XceI RCATGY 3 cut(s) 50, 522, 526
XmiI GTMKAC 2 cut(s) 788, 1005
XspI CTAG 4 cut(s) 240, 248, 411, 951
Zsp2I ATGCAT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.