Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011556

Physical Location & Seq

Genomic Coordinates Reverse (-)

7914505 .. 7916656

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAGAAATAACGACATGGTCAGAACGCAGCAGGAAAGAATGCACGCAAATGCTCTGCCTCAGCATTCTGACTCCGACCGTCGGATTATTGACGCCCCTGGCCCGTCCCTGCTGCTTTATCAAGTTTGGAAAGGAAACAATAAATTTTGCTTTAATGGAAGAATTATATTGGGTCCAGATTCGAGGTCATTATTCCTTACTGTGTCCCTAATTGTGGTTCCGGTGATCCTGTTTTGCGCCTTTCTTTCGCAAGGACTAATTCATCAACTCCCGCTCTACATTGGCATTCTTATTGTGGCTTTATGTCCAGTATTAGCAGTATATGTTGTGATTCTTCTCTTGATCACATCTGCAAGAGATCCTGGCATTATTCCTCGCAGCTTGCATCCTCCAGAACCAGAAGATGACGGCTATGTCTCTAGTATCTCTTCTGATTGGCCAGGAAGTCAGAATGGGCCTCCAGGCATACCACCCACAAAAGAAGTTATCATTAACGGCGTGATAGTTAAAACCAAATATTGTCAAACATGCATGCTATATCGCCCACCCCGATGCTCTCACTGCTCTATATGCAACAACTGCGTTGATCGTTTTGATCACCATTGCCCATGGGTGGGGCAATGCATTGGCAAAAGGAATTACAGATTCTTTTTCATGTTTGTGTGCTCCACGACCGTTCTGTGTCTCTATGTCTTTGCGTTCTGCTGGGTAAACATCATGCAGATAATGGATTATTACCATTGCAGTCTCTGGAGAGCTTTTTCAAAGTCACCTGTTTCAGGAGTTCTAATTCTCTATACATTTGGAGCTGCTTGGTTTGTTGGAGGTCTCACAGGATTCCATATCTATTTAATCCTCACTAATCAGACAACATATGAAAACTTTCGGTATCGGTACAATCTGAAGATGAACCCTTACAATCGTGGGTGTTTTAGCAATATTACGGAAGTCTTCTTCTCTGAAATTCCGAGATCTATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

328

Amino Acids

37.28

Weight (kDa)

8.75

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22230
malus_domestica	MD13G1133700.v1.1 MD16G1144100.v1.1
prunus_persica	Prupe.1G212000_v2.0.a1 Prupe.1G212000_v2.0.a1
pyrus_communis	pycom13g11650 pycom16g11350
rosa_chinensis	RchiOBHm_Chr4g0428471
rosa_laevigata	RLG00000007147
rosa_multiflora	Rmu_sc0006844.1_g000007 Rmu_sc0010735.1_g000007
rosa_roxburghii	Rroxscaffold_5G00370140
rosa_rugosa	Rorug04G0225400 Rorug04G0225400 Rorug04G0225400
rosa_samantha	Rh4AG283000 Rh4BG288700 Rh4CG304300 Rh4DG285800
rosa_wichuraiana	Rw4G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
AccBSI	CCGCTC	1 cut(s)	274
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	2 cut(s)	220, 353
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	2 cut(s)	143, 963
AcuI	CTGAAG	1 cut(s)	923
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	1 cut(s)	896
AfiI	CCNNNNNNNGG	5 cut(s)	81, 214, 613, 614, 779
AgsI	TTSAA	1 cut(s)	765
AjnI	CCWGG	4 cut(s)	97, 361, 439, 460
AluBI	AGCT	3 cut(s)	381, 758, 809
AluI	AGCT	3 cut(s)	381, 758, 809
Alw21I	GWGCWC	1 cut(s)	668
Alw26I	GTCTC	4 cut(s)	421, 689, 752, 833
AlwI	GGATC	2 cut(s)	220, 353
AlwNI	CAGNNNCTG	1 cut(s)	750
AoxI	GGCC	3 cut(s)	100, 437, 455
ApeKI	GCWGC	4 cut(s)	28, 112, 378, 809
ApoI	RAATTY	2 cut(s)	143, 963
Asp700I	GAANNNNTTC	1 cut(s)	882
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	3 cut(s)	101, 173, 455
AsuHPI	GGTGA	3 cut(s)	235, 590, 762
AvaII	GGWCC	1 cut(s)	173
BalI	TGGCCA	1 cut(s)	439
BbsI	GAAGAC	1 cut(s)	943
Bbv12I	GWGCWC	1 cut(s)	668
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	4 cut(s)	40, 99, 390, 796
BceAI	ACGGC	2 cut(s)	424, 511
BciT130I	CCWGG	4 cut(s)	99, 363, 441, 462
BclI	TGATCA	2 cut(s)	342, 595
BcoDI	GTCTC	4 cut(s)	421, 689, 752, 833
BfaI	CTAG	1 cut(s)	420
BglII	AGATCT	1 cut(s)	971
BisI	GCNGC	4 cut(s)	29, 113, 379, 810
BlsI	GCNGC	4 cut(s)	30, 114, 380, 811
Bme1390I	CCNGG	4 cut(s)	99, 363, 441, 462
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	101, 173, 455
BmiI	GGNNCC	2 cut(s)	174, 219
BmrFI	CCNGG	4 cut(s)	99, 363, 441, 462
BmsI	GCATC	2 cut(s)	394, 542
BpiI	GAAGAC	1 cut(s)	943
BpmI	CTGGAG	3 cut(s)	375, 444, 772
Bpu10I	CCTNAGC	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	2 cut(s)	97, 608
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	5 cut(s)	81, 214, 613, 614, 779
Bse1I	ACTGG	1 cut(s)	308
Bse3DI	GCAATG	3 cut(s)	601, 626, 739
BseBI	CCWGG	4 cut(s)	99, 363, 441, 462
BseDI	CCNNGG	2 cut(s)	97, 608
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	5 cut(s)	81, 214, 613, 614, 779
BseMI	GCAATG	3 cut(s)	601, 626, 739
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	308
BseXI	GCAGC	4 cut(s)	40, 99, 390, 796
BseYI	CCCAGC	1 cut(s)	705
Bsh1285I	CGRYCG	2 cut(s)	79, 675
BshFI	GGCC	3 cut(s)	102, 439, 457
BsiEI	CGRYCG	2 cut(s)	79, 675
BsiHKAI	GWGCWC	1 cut(s)	668
BsiSI	CCGG	1 cut(s)	221
BslFI	GGGAC	2 cut(s)	91, 190
BslI	CCNNNNNNNGG	5 cut(s)	81, 214, 613, 614, 779
BsmAI	GTCTC	4 cut(s)	421, 689, 752, 833
BsmFI	GGGAC	2 cut(s)	91, 190
BsmI	GAATGC	3 cut(s)	45, 64, 285
BsnI	GGCC	3 cut(s)	102, 439, 457
Bso31I	GGTCTC	1 cut(s)	833
Bsp1286I	GDGCHC	1 cut(s)	668
Bsp143I	GATC	6 cut(s)	225, 342, 358, 586, 595, 971
Bsp19I	CCATGG	1 cut(s)	608
BspACI	CCGC	1 cut(s)	272
BspANI	GGCC	3 cut(s)	102, 439, 457
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	174, 219
BspPI	GGATC	2 cut(s)	220, 353
BspTNI	GGTCTC	1 cut(s)	833
BsrBI	CCGCTC	1 cut(s)	274
BsrDI	GCAATG	3 cut(s)	601, 626, 739
BsrI	ACTGG	1 cut(s)	308
BssECI	CCNNGG	2 cut(s)	97, 608
BssMI	GATC	6 cut(s)	225, 342, 358, 586, 595, 971
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	608
Bst2UI	CCWGG	4 cut(s)	99, 363, 441, 462
Bst4CI	ACNGT	3 cut(s)	80, 202, 676
Bst6I	CTCTTC	1 cut(s)	433
BstACI	GRCGYC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	579
BstC8I	GCNNGC	3 cut(s)	45, 383, 533
BstDEI	CTNAG	1 cut(s)	60
BstDSI	CCRYGG	1 cut(s)	608
BstENI	CCTNNNNNAGG	1 cut(s)	777
BstF5I	GGATG	1 cut(s)	385
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	6 cut(s)	228, 345, 361, 589, 598, 974
BstMAI	GTCTC	4 cut(s)	421, 689, 752, 833
BstMBI	GATC	6 cut(s)	225, 342, 358, 586, 595, 971
BstMCI	CGRYCG	2 cut(s)	79, 675
BstMWI	GCNNNNNNNGC	3 cut(s)	561, 570, 579
BstNI	CCWGG	4 cut(s)	99, 363, 441, 462
BstNSI	RCATGY	2 cut(s)	531, 535
BstSCI	CCNGG	4 cut(s)	97, 361, 439, 460
BstV1I	GCAGC	4 cut(s)	40, 99, 390, 796
BstV2I	GAAGAC	1 cut(s)	943
BstX2I	RGATCY	2 cut(s)	358, 971
BstYI	RGATCY	2 cut(s)	358, 971
BsuRI	GGCC	3 cut(s)	102, 439, 457
BtgI	CCRYGG	1 cut(s)	608
BtsCI	GGATG	1 cut(s)	385
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	559
Cac8I	GCNNGC	3 cut(s)	45, 383, 533
CaiI	CAGNNNCTG	1 cut(s)	750
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	3 cut(s)	101, 173, 455
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	895
CviAII	CATG	6 cut(s)	16, 528, 532, 609, 655, 718
CviJI	RGCY	8 cut(s)	102, 299, 381, 411, 439, 457, 758, 809
CviKI_1	RGCY	8 cut(s)	102, 299, 381, 411, 439, 457, 758, 809
CviQI	GTAC	1 cut(s)	895
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	6 cut(s)	227, 344, 360, 588, 597, 973
DpnII	GATC	6 cut(s)	225, 342, 358, 586, 595, 971
DrdI	GACNNNNNNGTC	1 cut(s)	413
DseDI	GACNNNNNNGTC	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	433
EarI	CTCTTC	1 cut(s)	433
Eco130I	CCWWGG	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	833
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	923
EcoNI	CCTNNNNNAGG	1 cut(s)	777
EcoRII	CCWGG	4 cut(s)	97, 361, 439, 460
EcoT14I	CCWWGG	1 cut(s)	608
EcoT22I	ATGCAT	2 cut(s)	533, 626
ErhI	CCWWGG	1 cut(s)	608
FaeI	CATG	6 cut(s)	19, 531, 535, 612, 658, 721
FaqI	GGGAC	2 cut(s)	91, 190
FatI	CATG	6 cut(s)	15, 527, 531, 608, 654, 717
FauI	CCCGC	1 cut(s)	279
FauNDI	CATATG	1 cut(s)	874
FbaI	TGATCA	2 cut(s)	342, 595
Fnu4HI	GCNGC	4 cut(s)	29, 113, 379, 810
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	4 cut(s)	29, 113, 379, 810
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	4 cut(s)	29, 113, 379, 810
GsaI	CCCAGC	1 cut(s)	709
GsuI	CTGGAG	3 cut(s)	375, 444, 772
HaeIII	GGCC	3 cut(s)	102, 439, 457
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	6 cut(s)	19, 531, 535, 612, 658, 721
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HinfI	GANTC	5 cut(s)	71, 179, 331, 645, 837
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	3 cut(s)	235, 590, 762
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188III	TCNNGA	5 cut(s)	176, 340, 392, 751, 780
Hpy8I	GTNNAC	1 cut(s)	712
Hpy99I	CGWCG	1 cut(s)	84
HpyCH4III	ACNGT	3 cut(s)	80, 202, 676
HpyCH4V	TGCA	8 cut(s)	43, 353, 385, 531, 573, 624, 721, 744
HpyF10VI	GCNNNNNNNGC	3 cut(s)	561, 570, 579
HpyF3I	CTNAG	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	6 cut(s)	19, 531, 535, 612, 658, 721
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	2 cut(s)	342, 595
Kzo9I	GATC	6 cut(s)	225, 342, 358, 586, 595, 971
LmnI	GCTCC	2 cut(s)	671, 806
Lsp1109I	GCAGC	4 cut(s)	40, 99, 390, 796
LweI	GCATC	2 cut(s)	394, 542
MaeI	CTAG	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	768
MalI	GATC	6 cut(s)	227, 344, 360, 588, 597, 973
MbiI	CCGCTC	1 cut(s)	274
MboI	GATC	6 cut(s)	225, 342, 358, 586, 595, 971
MboII	GAAGA	7 cut(s)	171, 326, 413, 420, 916, 943, 946
MflI	RGATCY	2 cut(s)	358, 971
MhlI	GDGCHC	1 cut(s)	668
MlsI	TGGCCA	1 cut(s)	439
MluCI	AATT	7 cut(s)	143, 162, 210, 258, 637, 789, 963
MluNI	TGGCCA	1 cut(s)	439
MlyI	GAGTC	1 cut(s)	65
MmeI	TCCRAC	3 cut(s)	62, 99, 802
MnlI	CCTC	7 cut(s)	69, 177, 384, 399, 468, 818, 866
Mox20I	TGGCCA	1 cut(s)	439
Mph1103I	ATGCAT	2 cut(s)	533, 626
MroXI	GAANNNNTTC	1 cut(s)	882
MscI	TGGCCA	1 cut(s)	439
MseI	TTAA	4 cut(s)	153, 492, 507, 851
MslI	CAYNNNNRTG	3 cut(s)	48, 550, 659
Msp20I	TGGCCA	1 cut(s)	439
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	4 cut(s)	99, 363, 441, 462
Mva1269I	GAATGC	3 cut(s)	45, 64, 285
MvaI	CCWGG	4 cut(s)	99, 363, 441, 462
MwoI	GCNNNNNNNGC	3 cut(s)	561, 570, 579
NcoI	CCATGG	1 cut(s)	608
NdeI	CATATG	1 cut(s)	874
NdeII	GATC	6 cut(s)	225, 342, 358, 586, 595, 971
NlaIII	CATG	6 cut(s)	19, 531, 535, 612, 658, 721
NlaIV	GGNNCC	2 cut(s)	174, 219
NmuCI	GTSAC	1 cut(s)	768
NsiI	ATGCAT	2 cut(s)	533, 626
NspI	RCATGY	2 cut(s)	531, 535
PaeI	GCATGC	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	547
PctI	GAATGC	3 cut(s)	45, 64, 285
PdmI	GAANNNNTTC	1 cut(s)	882
PfeI	GAWTC	4 cut(s)	179, 331, 645, 837
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	4 cut(s)	30, 114, 380, 811
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Psp6I	CCWGG	4 cut(s)	97, 361, 439, 460
PspFI	CCCAGC	1 cut(s)	705
PspGI	CCWGG	4 cut(s)	97, 361, 439, 460
PspN4I	GGNNCC	2 cut(s)	174, 219
PspPI	GGNCC	3 cut(s)	101, 173, 455
PstNI	CAGNNNCTG	1 cut(s)	750
PsuI	RGATCY	2 cut(s)	358, 971
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	896
RsaNI	GTAC	1 cut(s)	895
RseI	CAYNNNNRTG	3 cut(s)	48, 550, 659
SaqAI	TTAA	4 cut(s)	153, 492, 507, 851
SatI	GCNGC	4 cut(s)	29, 113, 379, 810
Sau3AI	GATC	6 cut(s)	225, 342, 358, 586, 595, 971
Sau96I	GGNCC	3 cut(s)	101, 173, 455
SchI	GAGTC	1 cut(s)	65
ScrFI	CCNGG	4 cut(s)	99, 363, 441, 462
SduI	GDGCHC	1 cut(s)	668
SetI	ASST	6 cut(s)	188, 383, 760, 775, 811, 829
SfaNI	GCATC	2 cut(s)	394, 542
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	3 cut(s)	48, 550, 659
SphI	GCATGC	1 cut(s)	535
Sse9I	AATT	7 cut(s)	143, 162, 210, 258, 637, 789, 963
SsiI	CCGC	1 cut(s)	272
SspI	AATATT	2 cut(s)	518, 940
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	4 cut(s)	97, 361, 439, 460
StyI	CCWWGG	1 cut(s)	608
TaaI	ACNGT	3 cut(s)	80, 202, 676
TaqI	TCGA	1 cut(s)	182
TasI	AATT	7 cut(s)	143, 162, 210, 258, 637, 789, 963
TfiI	GAWTC	4 cut(s)	179, 331, 645, 837
Tru1I	TTAA	4 cut(s)	153, 492, 507, 851
Tru9I	TTAA	4 cut(s)	153, 492, 507, 851
TscAI	CASTG	1 cut(s)	566
TseFI	GTSAC	1 cut(s)	768
TseI	GCWGC	4 cut(s)	28, 112, 378, 809
Tsp45I	GTSAC	1 cut(s)	768
TspDTI	ATGAA	4 cut(s)	251, 643, 891, 923
TspGWI	ACGGA	1 cut(s)	959
TspRI	CASTG	1 cut(s)	566
Tth111I	GACNNNGTC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	173
XagI	CCTNNNNNAGG	1 cut(s)	777
XapI	RAATTY	2 cut(s)	143, 963
XceI	RCATGY	2 cut(s)	531, 535
XmnI	GAANNNNTTC	1 cut(s)	882
XspI	CTAG	1 cut(s)	420
Zsp2I	ATGCAT	2 cut(s)	533, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.