pycom13g11650

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011556
Physical Location & Seq
Reverse (-)
8030042 .. 8032870
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g11650.1

Sequence Viewer

Length: 1323 bp
ATGAGAAACAACGACATGGTCAGAACGCAGCAGGAAAGAATGTACGGAAATGCTCTGCCTCATCAGCATTCCGACTCCGACCGTCGGATTATCGACGCCCCTGGCCCGTCCCTGCGGCTTTATCAAGTTTGGAAAGGAAACAATAAATTTTTCTTTAATGGAAGAATTATATTGGGTCCAGATTCGAGGTCATTAATCCTTACTGTGTCCCTAATTGTGGTTCCAGTGATCCTGTTCTGCGCTTTTGTTTCGCAAGGACTAATTCATCAATTCCCGCACTACATTGGCAATCTTATTGTGGCTATATGTCCTGTATTAGCAGTATATGTTGTTACTCTTCTCTTGATTACATCTGCAAGAGATCCTGGCATTATTCCTCGTAGCTTGCATCCTCCAGAACCAGAAGATGACGGCTATGTCTCTAGTATCTCTTCTGATTGGCCAGGAAGCCAGAATGGACCTACAGGCATACCACCCACAAAAGAAGTTATCATTAATGGCGTGATAGTTAAAACCAAATACTGTCAAACATGCATGCTATATCGCCCACCCCGATGCTCTCATTGCTCTATATGCAACAACTGCGTTGAGCGTTTTGATCACCATTGTCCATGGGTGGGGCAATGTATTGGCAAAAGGAATTACAGATTATTTTTCATGTTTGTGTCCTCCACGACTGTTCTGTGTCTCTATGTCTTTGCCTTCTGCTGGGTAAACGTCATGAAGATAATGGATTATTACCATTGCAGTCTCTGGAGAGCTTTATCAAAGTCACCTGTTTCAGGTGCTCTAATTCTCTATACATTTGGAGCTGCTTGGTTTGTTGGAGGTCTCACAGGATTCCATCTCTATTTAATTCTCACCAATCAGACAACATATGAAAACTTTCGGTACCGGTACAACGTGAAGACGAACCCTTACAATCGTGGGTGTTTTAGCAATGTTGCGGAAGTCTTCTTCTCTGAAATTCCAAGATCTAAACATAACTTCAGGGAAGTGGTCAAGGGCGATACTTCTTCTGTCTACACCACTTCAATGCCATCAGGCCATCCCATGAGCCCAGAGATGCCCAAAGCAAGTTCTGACATAGAAATGGGAAAACGACAAGCTGTTGCTGCTGAAGATCTGGAGGATATACAGACTCAGATTGATAGTGTTGGTGGATTGCAGCGGTGCGAGACCCAGCCAAGACATACAAACTGGGATCACAAAGCCAACTGGGAGAGCTCACCTGATATACAAATGTTGGCTGCGGAGTTTGGAATGGAACATGGTTCAACAGGCAGACAGAAAATTGAAGGGAGTATTGATCTGAAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04391 map04391
Pfam Domains
Protein Families
DHHC

Protein Analysis

441

Amino Acids

49.7

Weight (kDa)

8.29

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 171 - 297 7.5e-37 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 416
Acc65I GGTACC 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 891
AccI GTMKAC 1 cut(s) 1023
AciI CCGC 5 cut(s) 115, 275, 947, 1171, 1253
AclWI GGATC 3 cut(s) 223, 356, 1212
AcoI YGGCCR 1 cut(s) 440
AcsI RAATTY 2 cut(s) 146, 966
AcuI CTGAAG 2 cut(s) 973, 1140
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 3 cut(s) 44, 893, 899
AfiI CCNNNNNNNGG 5 cut(s) 84, 217, 617, 708, 782
AgeI ACCGGT 1 cut(s) 894
AgsI TTSAA 3 cut(s) 1035, 1278, 1298
AjnI CCWGG 3 cut(s) 100, 364, 442
AluBI AGCT 6 cut(s) 384, 761, 812, 1109, 1227, 1320
AluI AGCT 6 cut(s) 384, 761, 812, 1109, 1227, 1320
Alw21I GWGCWC 2 cut(s) 790, 1229
Alw26I GTCTC 5 cut(s) 424, 692, 755, 836, 1172
AlwI GGATC 3 cut(s) 223, 356, 1212
AlwNI CAGNNNCTG 1 cut(s) 753
AoxI GGCC 3 cut(s) 103, 440, 1045
ApeKI GCWGC 5 cut(s) 28, 812, 1115, 1168, 1250
ApoI RAATTY 2 cut(s) 146, 966
AseI ATTAAT 2 cut(s) 194, 495
AsiGI ACCGGT 1 cut(s) 894
Asp700I GAANNNNTTC 1 cut(s) 885
Asp718I GGTACC 1 cut(s) 891
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 3 cut(s) 104, 176, 458
AsuHPI GGTGA 4 cut(s) 593, 765, 853, 1221
AvaII GGWCC 2 cut(s) 176, 458
BalI TGGCCA 1 cut(s) 442
BanI GGYRCC 1 cut(s) 891
BanII GRGCYC 2 cut(s) 1061, 1229
BbsI GAAGAC 2 cut(s) 914, 946
Bbv12I GWGCWC 2 cut(s) 790, 1229
BbvI GCAGC 5 cut(s) 40, 799, 1102, 1180, 1237
BccI CCATC 3 cut(s) 852, 1048, 1056
BceAI ACGGC 1 cut(s) 427
BciT130I CCWGG 3 cut(s) 102, 366, 444
BclI TGATCA 1 cut(s) 598
BcoDI GTCTC 5 cut(s) 424, 692, 755, 836, 1172
BfaI CTAG 1 cut(s) 423
BfmI CTRYAG 1 cut(s) 462
BglII AGATCT 2 cut(s) 974, 1123
BisI GCNGC 6 cut(s) 29, 116, 813, 1116, 1169, 1251
BlsI GCNGC 6 cut(s) 30, 117, 814, 1117, 1170, 1252
Bme1390I CCNGG 3 cut(s) 102, 366, 444
Bme18I GGWCC 2 cut(s) 176, 458
BmgT120I GGNCC 3 cut(s) 104, 176, 458
BmiI GGNNCC 3 cut(s) 177, 222, 893
BmrFI CCNGG 3 cut(s) 102, 366, 444
BmrI ACTGGG 2 cut(s) 1210, 1228
BmsI GCATC 3 cut(s) 397, 545, 1056
BmuI ACTGGG 2 cut(s) 1210, 1228
BpiI GAAGAC 2 cut(s) 914, 946
BpmI CTGGAG 3 cut(s) 378, 775, 1148
BsaHI GRCGYC 1 cut(s) 96
BsaI GGTCTC 2 cut(s) 836, 1172
BsaJI CCNNGG 2 cut(s) 100, 611
BsaWI WCCGGW 1 cut(s) 894
Bsc4I CCNNNNNNNGG 5 cut(s) 84, 217, 617, 708, 782
Bse118I RCCGGY 1 cut(s) 894
Bse1I ACTGG 3 cut(s) 224, 1205, 1223
Bse3DI GCAATG 4 cut(s) 562, 629, 742, 946
BseBI CCWGG 3 cut(s) 102, 366, 444
BseDI CCNNGG 2 cut(s) 100, 611
BseGI GGATG 2 cut(s) 388, 1048
BseLI CCNNNNNNNGG 5 cut(s) 84, 217, 617, 708, 782
BseMI GCAATG 4 cut(s) 562, 629, 742, 946
BseMII CTCAG 1 cut(s) 1157
BseNI ACTGG 3 cut(s) 224, 1205, 1223
BseXI GCAGC 5 cut(s) 40, 799, 1102, 1180, 1237
BseYI CCCAGC 2 cut(s) 708, 1182
Bsh1285I CGRYCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 105, 442, 1047
BshNI GGYRCC 1 cut(s) 891
BshTI ACCGGT 1 cut(s) 894
BsiEI CGRYCG 1 cut(s) 82
BsiHKAI GWGCWC 2 cut(s) 790, 1229
BsiSI CCGG 1 cut(s) 895
BslFI GGGAC 2 cut(s) 94, 193
BslI CCNNNNNNNGG 5 cut(s) 84, 217, 617, 708, 782
BsmAI GTCTC 5 cut(s) 424, 692, 755, 836, 1172
BsmFI GGGAC 2 cut(s) 94, 193
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 3 cut(s) 105, 442, 1047
Bso31I GGTCTC 2 cut(s) 836, 1172
Bsp1286I GDGCHC 3 cut(s) 790, 1061, 1229
Bsp143I GATC 7 cut(s) 228, 361, 598, 974, 1123, 1204, 1309
Bsp19I CCATGG 1 cut(s) 611
BspACI CCGC 5 cut(s) 115, 275, 947, 1171, 1253
BspANI GGCC 3 cut(s) 105, 442, 1047
BspCNI CTCAG 1 cut(s) 1156
BspHI TCATGA 1 cut(s) 720
BspLI GGNNCC 3 cut(s) 177, 222, 893
BspPI GGATC 3 cut(s) 223, 356, 1212
BspQI GCTCTTC 1 cut(s) 1310
BspT107I GGYRCC 1 cut(s) 891
BspTNI GGTCTC 2 cut(s) 836, 1172
BsrDI GCAATG 4 cut(s) 562, 629, 742, 946
BsrFI RCCGGY 1 cut(s) 894
BsrI ACTGG 3 cut(s) 224, 1205, 1223
BssAI RCCGGY 1 cut(s) 894
BssECI CCNNGG 2 cut(s) 100, 611
BssMI GATC 7 cut(s) 228, 361, 598, 974, 1123, 1204, 1309
BssNI GRCGYC 1 cut(s) 96
BssT1I CCWWGG 1 cut(s) 611
Bst2UI CCWGG 3 cut(s) 102, 366, 444
Bst4CI ACNGT 4 cut(s) 83, 205, 524, 679
Bst6I CTCTTC 3 cut(s) 342, 436, 1310
BstACI GRCGYC 1 cut(s) 96
BstAPI GCANNNNNTGC 1 cut(s) 582
BstC8I GCNNGC 2 cut(s) 386, 536
BstDEI CTNAG 1 cut(s) 1143
BstDSI CCRYGG 1 cut(s) 611
BstENI CCTNNNNNAGG 1 cut(s) 780
BstF5I GGATG 2 cut(s) 388, 1048
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 7 cut(s) 231, 364, 601, 977, 1126, 1207, 1312
BstMAI GTCTC 5 cut(s) 424, 692, 755, 836, 1172
BstMBI GATC 7 cut(s) 228, 361, 598, 974, 1123, 1204, 1309
BstMCI CGRYCG 1 cut(s) 82
BstMWI GCNNNNNNNGC 5 cut(s) 64, 564, 573, 582, 1115
BstNI CCWGG 3 cut(s) 102, 366, 444
BstNSI RCATGY 2 cut(s) 534, 538
BstSCI CCNGG 3 cut(s) 100, 364, 442
BstSFI CTRYAG 1 cut(s) 462
BstV1I GCAGC 5 cut(s) 40, 799, 1102, 1180, 1237
BstV2I GAAGAC 2 cut(s) 914, 946
BstX2I RGATCY 3 cut(s) 361, 974, 1123
BstYI RGATCY 3 cut(s) 361, 974, 1123
BsuRI GGCC 3 cut(s) 105, 442, 1047
BtgI CCRYGG 1 cut(s) 611
BtsCI GGATG 2 cut(s) 388, 1048
BtsIMutI CAGTG 1 cut(s) 231
Cac8I GCNNGC 2 cut(s) 386, 536
CaiI CAGNNNCTG 1 cut(s) 753
CciI TCATGA 1 cut(s) 720
CfoI GCGC 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 894
Cfr13I GGNCC 3 cut(s) 104, 176, 458
CseI GACGC 1 cut(s) 104
Csp6I GTAC 3 cut(s) 43, 892, 898
CspAI ACCGGT 1 cut(s) 894
CviAII CATG 8 cut(s) 16, 531, 535, 612, 658, 721, 1054, 1271
CviQI GTAC 3 cut(s) 43, 892, 898
DdeI CTNAG 1 cut(s) 1143
DpnI GATC 7 cut(s) 230, 363, 600, 976, 1125, 1206, 1311
DpnII GATC 7 cut(s) 228, 361, 598, 974, 1123, 1204, 1309
DrdI GACNNNNNNGTC 1 cut(s) 416
DseDI GACNNNNNNGTC 1 cut(s) 416
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 3 cut(s) 342, 436, 1310
EarI CTCTTC 3 cut(s) 342, 436, 1310
Ecl136II GAGCTC 1 cut(s) 1227
Eco130I CCWWGG 1 cut(s) 611
Eco24I GRGCYC 2 cut(s) 1061, 1229
Eco31I GGTCTC 2 cut(s) 836, 1172
Eco47I GGWCC 2 cut(s) 176, 458
Eco53kI GAGCTC 1 cut(s) 1227
Eco57I CTGAAG 2 cut(s) 973, 1140
EcoICRI GAGCTC 1 cut(s) 1227
EcoNI CCTNNNNNAGG 1 cut(s) 780
EcoRII CCWGG 3 cut(s) 100, 364, 442
EcoT14I CCWWGG 1 cut(s) 611
EcoT22I ATGCAT 1 cut(s) 536
EcoT38I GRGCYC 2 cut(s) 1061, 1229
ErhI CCWWGG 1 cut(s) 611
FaeI CATG 8 cut(s) 19, 534, 538, 615, 661, 724, 1057, 1274
FaqI GGGAC 2 cut(s) 94, 193
FatI CATG 8 cut(s) 15, 530, 534, 611, 657, 720, 1053, 1270
FauI CCCGC 1 cut(s) 282
FauNDI CATATG 1 cut(s) 877
FbaI TGATCA 1 cut(s) 598
FblI GTMKAC 1 cut(s) 1023
Fnu4HI GCNGC 6 cut(s) 29, 116, 813, 1116, 1169, 1251
FokI GGATG 2 cut(s) 375, 1035
FriOI GRGCYC 2 cut(s) 1061, 1229
Fsp4HI GCNGC 6 cut(s) 29, 116, 813, 1116, 1169, 1251
FspBI CTAG 1 cut(s) 423
GlaI GCGC 1 cut(s) 241
GluI GCNGC 6 cut(s) 29, 116, 813, 1116, 1169, 1251
GsaI CCCAGC 2 cut(s) 712, 1186
GsuI CTGGAG 3 cut(s) 378, 775, 1148
HaeIII GGCC 3 cut(s) 105, 442, 1047
HapII CCGG 1 cut(s) 895
HgaI GACGC 1 cut(s) 104
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 8 cut(s) 19, 534, 538, 615, 661, 724, 1057, 1274
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HinfI GANTC 4 cut(s) 74, 182, 840, 1141
HpaII CCGG 1 cut(s) 895
HphI GGTGA 4 cut(s) 593, 765, 853, 1221
Hpy166II GTNNAC 2 cut(s) 715, 1024
Hpy188III TCNNGA 6 cut(s) 179, 343, 395, 721, 754, 1127
Hpy8I GTNNAC 2 cut(s) 715, 1024
Hpy99I CGWCG 2 cut(s) 87, 98
HpyAV CCTTC 2 cut(s) 712, 1292
HpyCH4III ACNGT 4 cut(s) 83, 205, 524, 679
HpyCH4IV ACGT 2 cut(s) 717, 903
HpyCH4V TGCA 6 cut(s) 356, 388, 534, 576, 747, 1168
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 564, 573, 582, 1115
HpyF3I CTNAG 1 cut(s) 1143
HpySE526I ACGT 2 cut(s) 717, 903
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 8 cut(s) 19, 534, 538, 615, 661, 724, 1057, 1274
HspAI GCGC 1 cut(s) 240
KpnI GGTACC 1 cut(s) 895
Ksp22I TGATCA 1 cut(s) 598
Kzo9I GATC 7 cut(s) 228, 361, 598, 974, 1123, 1204, 1309
LguI GCTCTTC 1 cut(s) 1310
LmnI GCTCC 1 cut(s) 809
Lsp1109I GCAGC 5 cut(s) 40, 799, 1102, 1180, 1237
LweI GCATC 3 cut(s) 397, 545, 1056
MaeI CTAG 1 cut(s) 423
MaeII ACGT 2 cut(s) 717, 903
MaeIII GTNAC 2 cut(s) 331, 771
MalI GATC 7 cut(s) 230, 363, 600, 976, 1125, 1206, 1311
MboI GATC 7 cut(s) 228, 361, 598, 974, 1123, 1204, 1309
MflI RGATCY 3 cut(s) 361, 974, 1123
MhlI GDGCHC 3 cut(s) 790, 1061, 1229
MlsI TGGCCA 1 cut(s) 442
MluNI TGGCCA 1 cut(s) 442
MlyI GAGTC 2 cut(s) 68, 1135
MmeI TCCRAC 4 cut(s) 65, 96, 102, 805
MnlI CCTC 7 cut(s) 69, 180, 387, 402, 679, 821, 1123
Mox20I TGGCCA 1 cut(s) 442
Mph1103I ATGCAT 1 cut(s) 536
MroXI GAANNNNTTC 1 cut(s) 885
MscI TGGCCA 1 cut(s) 442
MseI TTAA 5 cut(s) 156, 194, 495, 510, 854
MslI CAYNNNNRTG 4 cut(s) 553, 662, 1034, 1091
Msp20I TGGCCA 1 cut(s) 442
MspA1I CMGCKG 1 cut(s) 1171
MspI CCGG 1 cut(s) 895
MspR9I CCNGG 3 cut(s) 102, 366, 444
Mva1269I GAATGC 1 cut(s) 67
MvaI CCWGG 3 cut(s) 102, 366, 444
MwoI GCNNNNNNNGC 5 cut(s) 64, 564, 573, 582, 1115
NcoI CCATGG 1 cut(s) 611
NdeI CATATG 1 cut(s) 877
NdeII GATC 7 cut(s) 228, 361, 598, 974, 1123, 1204, 1309
NlaIII CATG 8 cut(s) 19, 534, 538, 615, 661, 724, 1057, 1274
NlaIV GGNNCC 3 cut(s) 177, 222, 893
NmuCI GTSAC 1 cut(s) 771
NsiI ATGCAT 1 cut(s) 536
NspI RCATGY 2 cut(s) 534, 538
PaeI GCATGC 1 cut(s) 538
PagI TCATGA 1 cut(s) 720
PciSI GCTCTTC 1 cut(s) 1310
PcsI WCGNNNNNNNCGW 1 cut(s) 550
PctI GAATGC 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 885
PfeI GAWTC 2 cut(s) 182, 840
PflFI GACNNNGTC 1 cut(s) 17
PinAI ACCGGT 1 cut(s) 894
PkrI GCNGC 6 cut(s) 30, 117, 814, 1117, 1170, 1252
PleI GAGTC 2 cut(s) 68, 1135
PpsI GAGTC 2 cut(s) 68, 1135
PshBI ATTAAT 2 cut(s) 194, 495
Psp124BI GAGCTC 1 cut(s) 1229
Psp6I CCWGG 3 cut(s) 100, 364, 442
PspFI CCCAGC 2 cut(s) 708, 1182
PspGI CCWGG 3 cut(s) 100, 364, 442
PspN4I GGNNCC 3 cut(s) 177, 222, 893
PspPI GGNCC 3 cut(s) 104, 176, 458
PstNI CAGNNNCTG 1 cut(s) 753
PsuI RGATCY 3 cut(s) 361, 974, 1123
PsyI GACNNNGTC 1 cut(s) 17
RsaI GTAC 3 cut(s) 44, 893, 899
RsaNI GTAC 3 cut(s) 43, 892, 898
RseI CAYNNNNRTG 4 cut(s) 553, 662, 1034, 1091
SacI GAGCTC 1 cut(s) 1229
SapI GCTCTTC 1 cut(s) 1310
SaqAI TTAA 5 cut(s) 156, 194, 495, 510, 854
SatI GCNGC 6 cut(s) 29, 116, 813, 1116, 1169, 1251
Sau3AI GATC 7 cut(s) 228, 361, 598, 974, 1123, 1204, 1309
Sau96I GGNCC 3 cut(s) 104, 176, 458
SchI GAGTC 2 cut(s) 68, 1135
ScrFI CCNGG 3 cut(s) 102, 366, 444
SduI GDGCHC 3 cut(s) 790, 1061, 1229
SfaNI GCATC 3 cut(s) 397, 545, 1056
SfcI CTRYAG 1 cut(s) 462
SinI GGWCC 2 cut(s) 176, 458
SmiMI CAYNNNNRTG 4 cut(s) 553, 662, 1034, 1091
SphI GCATGC 1 cut(s) 538
SsiI CCGC 5 cut(s) 115, 275, 947, 1171, 1253
SspMI CTAG 1 cut(s) 423
SstI GAGCTC 1 cut(s) 1229
StyD4I CCNGG 3 cut(s) 100, 364, 442
StyI CCWWGG 1 cut(s) 611
TaaI ACNGT 4 cut(s) 83, 205, 524, 679
TaiI ACGT 2 cut(s) 720, 906
TaqI TCGA 2 cut(s) 93, 185
TauI GCSGC 1 cut(s) 118
TfiI GAWTC 2 cut(s) 182, 840
Tru1I TTAA 5 cut(s) 156, 194, 495, 510, 854
Tru9I TTAA 5 cut(s) 156, 194, 495, 510, 854
TscAI CASTG 1 cut(s) 231
TseFI GTSAC 1 cut(s) 771
TseI GCWGC 5 cut(s) 28, 812, 1115, 1168, 1250
Tsp45I GTSAC 1 cut(s) 771
TspDTI ATGAA 4 cut(s) 254, 646, 737, 894
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 1 cut(s) 231
Tth111I GACNNNGTC 1 cut(s) 17
VpaK11BI GGWCC 2 cut(s) 176, 458
VspI ATTAAT 2 cut(s) 194, 495
XagI CCTNNNNNAGG 1 cut(s) 780
XapI RAATTY 2 cut(s) 146, 966
XceI RCATGY 2 cut(s) 534, 538
XmiI GTMKAC 1 cut(s) 1023
XmnI GAANNNNTTC 1 cut(s) 885
XspI CTAG 1 cut(s) 423
Zsp2I ATGCAT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.