Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011556

Physical Location & Seq

Genomic Coordinates Forward (+)

22503015 .. 22507508

Gene Structure 4494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G212000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGAGAAAAAACGACATGGTCAGAACGCAGGAAAGAATGTACACAACTGCTCTGCCTCCTCAGCATTCTGACTCCGACAGTCGAATTATCGACACCCCTGGCCCGTCCCTGCATCTCTATCAAGTTTGGAAAGGAAACAATAGATTTTGCTTCAATGGCAGAATTATATTGGGTCCAGATTCGAGGTCATTATTCCTTACCGTGTCCCTAATCGTTGTTCCAGTGATCCTGTTCTGCGCTTTTGTTTCTCAAAGACTAGTTGAGCAATTCCCACGCCATATTGGCAATCTTATTGTGGTTCTCTGTCCCCTGTTTGCAGTATATGTTGTTATTCTTCTCTTGATTACATCTGCAAGAGATCCTGGCATTATTCCTCGTAGCCTGCATCCTCCAGAACCAGAAGATGACGGCTATGTCTCTAGTATCTCTTCTGATTGGCCAGGAAGTCAGAATGGACCTCCCGGTGTACCACCCACAAAAGATACTATGGTTAATGGCGTGATAGTCAAGATCAAATATTGTCAAACATGCATGCTATATCGTCCACCCAGATGCTCTCATTGCTCTATATGCAACAACTGTGTTGAGCGTTTTGATCACCATTGCCCATGGGTGGGGCAATGCATTGGGAAAAGGAATTACAGATTCTTTTTCATGTTTGTGTCCTCCACGACCATGCTGTGCCTCTATGTCTTTGCCTTCTGCTGGGTAAACATAATGAAGATAATGGATGCTTACCATTGCAATCTCTGGAGAGCTTTATCAAGGTCACCTGTTTCAGGATTTCTAATTCTCTATACATTTGGAGCTGCTTGGTTTGTTGGAGGTCTCACTGGATTCCATCTCTATTTAATTTTCACCAATCAGACAACCTATGAGAATTTTCGGTATCGGTACAATGTGAAGATGAACCCGTACAATCGTGGGTGTTTTCGCAATGTTGGGGAAGTCTTCTTCTCTAAAATTCCGAGATCTAAACATAACTTCAGGGAAATGGTTAAGGGTGATTCGTCTTCTGTCTTTGCCAGTTCAATGTCATTACGCCATCCCATGAGCCCAGAGATTCCCAAAACAAGTTCTGACATAGAGATGGGAAAACGACAAGCTGTTGCTGCTGAAGATCTGGAGGATATACAGAGTCAGATTGATAGTGTTGGTGGATTGGAGAGGTGTGGAACCCAGCCAAGACATACAAACTGGGATCACAAAACCAACTGGGAGAGCTCACCTGATATACAAATGTTGGCTGCTGAGTTTGGAATGGAGCATGGTTCAACAGGTAGACAGAAAATTGAAGGGGCTAATGACCTTAAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04391 map04391

Pfam Domains

Protein Families

DHHC

Protein Analysis

440

Amino Acids

49.95

Weight (kDa)

8.72

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011556)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22230
malus_domestica	MD13G1133700.v1.1 MD16G1144100.v1.1
prunus_persica	Prupe.1G212000_v2.0.a1 Prupe.1G212000_v2.0.a1
pyrus_communis	pycom13g11650 pycom16g11350
rosa_chinensis	RchiOBHm_Chr4g0428471
rosa_laevigata	RLG00000007147
rosa_multiflora	Rmu_sc0006844.1_g000007 Rmu_sc0010735.1_g000007
rosa_roxburghii	Rroxscaffold_5G00370140
rosa_rugosa	Rorug04G0225400 Rorug04G0225400 Rorug04G0225400
rosa_samantha	Rh4AG283000 Rh4BG288700 Rh4CG304300 Rh4DG285800
rosa_wichuraiana	Rw4G024570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	1282
AclWI	GGATC	3 cut(s)	220, 353, 1209
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	2 cut(s)	880, 963
AcuI	CTGAAG	2 cut(s)	970, 1137
AfaI	GTAC	4 cut(s)	41, 468, 896, 917
AfiI	CCNNNNNNNGG	4 cut(s)	613, 614, 705, 779
AflII	CTTAAG	1 cut(s)	1310
AgsI	TTSAA	4 cut(s)	154, 1032, 1275, 1295
AhlI	ACTAGT	1 cut(s)	256
AjnI	CCWGG	3 cut(s)	97, 361, 439
AluBI	AGCT	4 cut(s)	758, 809, 1106, 1224
AluI	AGCT	4 cut(s)	758, 809, 1106, 1224
Alw21I	GWGCWC	1 cut(s)	1226
Alw26I	GTCTC	2 cut(s)	421, 833
AlwI	GGATC	3 cut(s)	220, 353, 1209
AoxI	GGCC	2 cut(s)	100, 437
ApeKI	GCWGC	3 cut(s)	809, 1112, 1247
ApoI	RAATTY	2 cut(s)	880, 963
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	3 cut(s)	101, 173, 455
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	5 cut(s)	590, 762, 850, 1016, 1218
AvaII	GGWCC	2 cut(s)	173, 455
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BalI	TGGCCA	1 cut(s)	439
BanII	GRGCYC	2 cut(s)	1058, 1226
BbsI	GAAGAC	2 cut(s)	943, 1005
Bbv12I	GWGCWC	1 cut(s)	1226
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	796, 1099, 1234
BccI	CCATC	3 cut(s)	849, 1053, 1084
BceAI	ACGGC	1 cut(s)	424
BciT130I	CCWGG	3 cut(s)	99, 363, 441
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	462
BcoDI	GTCTC	2 cut(s)	421, 833
BcuI	ACTAGT	1 cut(s)	256
BfaI	CTAG	2 cut(s)	257, 420
BfrI	CTTAAG	1 cut(s)	1310
BglI	GCCNNNNNGGC	1 cut(s)	282
BglII	AGATCT	2 cut(s)	971, 1120
BisI	GCNGC	3 cut(s)	810, 1113, 1248
BlsI	GCNGC	3 cut(s)	811, 1114, 1249
Bme1390I	CCNGG	4 cut(s)	99, 363, 441, 462
Bme18I	GGWCC	2 cut(s)	173, 455
BmgT120I	GGNCC	3 cut(s)	101, 173, 455
BmiI	GGNNCC	2 cut(s)	174, 1177
BmrFI	CCNGG	4 cut(s)	99, 363, 441, 462
BmrI	ACTGGG	2 cut(s)	1207, 1225
BmsI	GCATC	4 cut(s)	121, 394, 542, 721
BmuI	ACTGGG	2 cut(s)	1207, 1225
BpiI	GAAGAC	2 cut(s)	943, 1005
BpmI	CTGGAG	3 cut(s)	375, 772, 1145
Bpu10I	CCTNAGC	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	2 cut(s)	97, 608
Bsc4I	CCNNNNNNNGG	4 cut(s)	613, 614, 705, 779
Bse1I	ACTGG	5 cut(s)	221, 838, 1026, 1202, 1220
Bse3DI	GCAATG	5 cut(s)	559, 601, 626, 739, 943
BseBI	CCWGG	3 cut(s)	99, 363, 441
BseDI	CCNNGG	2 cut(s)	97, 608
BseGI	GGATG	3 cut(s)	385, 736, 1045
BseLI	CCNNNNNNNGG	4 cut(s)	613, 614, 705, 779
BseMI	GCAATG	5 cut(s)	559, 601, 626, 739, 943
BseMII	CTCAG	2 cut(s)	74, 1242
BseNI	ACTGG	5 cut(s)	221, 838, 1026, 1202, 1220
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	3 cut(s)	796, 1099, 1234
BseYI	CCCAGC	2 cut(s)	705, 1179
BshFI	GGCC	2 cut(s)	102, 439
BsiHKAI	GWGCWC	1 cut(s)	1226
BsiSI	CCGG	1 cut(s)	462
BslFI	GGGAC	3 cut(s)	91, 190, 291
BslI	CCNNNNNNNGG	4 cut(s)	613, 614, 705, 779
BsmAI	GTCTC	2 cut(s)	421, 833
BsmFI	GGGAC	3 cut(s)	91, 190, 291
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	2 cut(s)	102, 439
Bso31I	GGTCTC	1 cut(s)	833
Bsp1286I	GDGCHC	2 cut(s)	1058, 1226
Bsp1407I	TGTACA	1 cut(s)	39
Bsp143I	GATC	7 cut(s)	225, 358, 510, 595, 971, 1120, 1201
Bsp19I	CCATGG	1 cut(s)	608
BspANI	GGCC	2 cut(s)	102, 439
BspCNI	CTCAG	2 cut(s)	73, 1243
BspLI	GGNNCC	2 cut(s)	174, 1177
BspPI	GGATC	3 cut(s)	220, 353, 1209
BspTI	CTTAAG	1 cut(s)	1310
BspTNI	GGTCTC	1 cut(s)	833
BsrDI	GCAATG	5 cut(s)	559, 601, 626, 739, 943
BsrGI	TGTACA	1 cut(s)	39
BsrI	ACTGG	5 cut(s)	221, 838, 1026, 1202, 1220
BssECI	CCNNGG	2 cut(s)	97, 608
BssMI	GATC	7 cut(s)	225, 358, 510, 595, 971, 1120, 1201
BssT1I	CCWWGG	1 cut(s)	608
Bst2UI	CCWGG	3 cut(s)	99, 363, 441
Bst4CI	ACNGT	3 cut(s)	80, 202, 581
Bst6I	CTCTTC	1 cut(s)	433
BstAFI	CTTAAG	1 cut(s)	1310
BstAUI	TGTACA	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	383, 533
BstDEI	CTNAG	2 cut(s)	60, 1251
BstDSI	CCRYGG	1 cut(s)	608
BstEII	GGTNACC	1 cut(s)	768
BstENI	CCTNNNNNAGG	1 cut(s)	777
BstF5I	GGATG	3 cut(s)	385, 736, 1045
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	7 cut(s)	228, 361, 513, 598, 974, 1123, 1204
BstMAI	GTCTC	2 cut(s)	421, 833
BstMBI	GATC	7 cut(s)	225, 358, 510, 595, 971, 1120, 1201
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 156, 282, 561, 570, 1112
BstNI	CCWGG	3 cut(s)	99, 363, 441
BstNSI	RCATGY	2 cut(s)	531, 535
BstPI	GGTNACC	1 cut(s)	768
BstSCI	CCNGG	4 cut(s)	97, 361, 439, 460
BstV1I	GCAGC	3 cut(s)	796, 1099, 1234
BstV2I	GAAGAC	2 cut(s)	943, 1005
BstX2I	RGATCY	3 cut(s)	358, 971, 1120
BstYI	RGATCY	3 cut(s)	358, 971, 1120
BsuRI	GGCC	2 cut(s)	102, 439
BtgI	CCRYGG	1 cut(s)	608
BtsCI	GGATG	3 cut(s)	385, 736, 1045
BtsIMutI	CAGTG	2 cut(s)	228, 831
Cac8I	GCNNGC	2 cut(s)	383, 533
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	3 cut(s)	101, 173, 455
Csp6I	GTAC	4 cut(s)	40, 467, 895, 916
CviAII	CATG	8 cut(s)	16, 528, 532, 609, 655, 676, 1051, 1268
CviQI	GTAC	4 cut(s)	40, 467, 895, 916
DdeI	CTNAG	2 cut(s)	60, 1251
DpnI	GATC	7 cut(s)	227, 360, 512, 597, 973, 1122, 1203
DpnII	GATC	7 cut(s)	225, 358, 510, 595, 971, 1120, 1201
DrdI	GACNNNNNNGTC	1 cut(s)	413
DseDI	GACNNNNNNGTC	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	437
Eam1104I	CTCTTC	1 cut(s)	433
EarI	CTCTTC	1 cut(s)	433
Ecl136II	GAGCTC	1 cut(s)	1224
Eco130I	CCWWGG	1 cut(s)	608
Eco24I	GRGCYC	2 cut(s)	1058, 1226
Eco31I	GGTCTC	1 cut(s)	833
Eco47I	GGWCC	2 cut(s)	173, 455
Eco53kI	GAGCTC	1 cut(s)	1224
Eco57I	CTGAAG	2 cut(s)	970, 1137
Eco91I	GGTNACC	1 cut(s)	768
EcoICRI	GAGCTC	1 cut(s)	1224
EcoNI	CCTNNNNNAGG	1 cut(s)	777
EcoO65I	GGTNACC	1 cut(s)	768
EcoRII	CCWGG	3 cut(s)	97, 361, 439
EcoT14I	CCWWGG	1 cut(s)	608
EcoT22I	ATGCAT	2 cut(s)	533, 626
EcoT38I	GRGCYC	2 cut(s)	1058, 1226
ErhI	CCWWGG	1 cut(s)	608
FaeI	CATG	8 cut(s)	19, 531, 535, 612, 658, 679, 1054, 1271
FaqI	GGGAC	3 cut(s)	91, 190, 291
FatI	CATG	8 cut(s)	15, 527, 531, 608, 654, 675, 1050, 1267
FbaI	TGATCA	1 cut(s)	595
FblI	GTMKAC	1 cut(s)	1282
Fnu4HI	GCNGC	3 cut(s)	810, 1113, 1248
FokI	GGATG	3 cut(s)	372, 743, 1032
FriOI	GRGCYC	2 cut(s)	1058, 1226
Fsp4HI	GCNGC	3 cut(s)	810, 1113, 1248
FspBI	CTAG	2 cut(s)	257, 420
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	3 cut(s)	810, 1113, 1248
GsaI	CCCAGC	2 cut(s)	709, 1183
GsuI	CTGGAG	3 cut(s)	375, 772, 1145
HaeIII	GGCC	2 cut(s)	102, 439
HapII	CCGG	1 cut(s)	462
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	8 cut(s)	19, 531, 535, 612, 658, 679, 1054, 1271
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HinfI	GANTC	7 cut(s)	71, 179, 645, 837, 1007, 1063, 1138
HpaII	CCGG	1 cut(s)	462
HphI	GGTGA	5 cut(s)	590, 762, 850, 1016, 1218
Hpy166II	GTNNAC	5 cut(s)	42, 467, 545, 712, 1283
Hpy188I	TCNGA	9 cut(s)	23, 70, 76, 433, 450, 867, 969, 1081, 1143
Hpy188III	TCNNGA	7 cut(s)	176, 340, 392, 508, 751, 780, 1124
Hpy8I	GTNNAC	5 cut(s)	42, 467, 545, 712, 1283
HpyAV	CCTTC	2 cut(s)	709, 1289
HpyCH4III	ACNGT	3 cut(s)	80, 202, 581
HpyCH4V	TGCA	8 cut(s)	112, 317, 353, 385, 531, 573, 624, 744
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 156, 282, 561, 570, 1112
HpyF3I	CTNAG	2 cut(s)	60, 1251
Hsp92II	CATG	8 cut(s)	19, 531, 535, 612, 658, 679, 1054, 1271
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	7 cut(s)	225, 358, 510, 595, 971, 1120, 1201
LmnI	GCTCC	2 cut(s)	806, 1264
Lsp1109I	GCAGC	3 cut(s)	796, 1099, 1234
LweI	GCATC	4 cut(s)	121, 394, 542, 721
MaeI	CTAG	2 cut(s)	257, 420
MaeIII	GTNAC	1 cut(s)	768
MalI	GATC	7 cut(s)	227, 360, 512, 597, 973, 1122, 1203
MboI	GATC	7 cut(s)	225, 358, 510, 595, 971, 1120, 1201
MboII	GAAGA	9 cut(s)	326, 413, 420, 733, 916, 943, 946, 1005, 1130
MflI	RGATCY	3 cut(s)	358, 971, 1120
MhlI	GDGCHC	2 cut(s)	1058, 1226
MlsI	TGGCCA	1 cut(s)	439
MluCI	AATT	9 cut(s)	84, 162, 266, 637, 789, 852, 880, 963, 1290
MluNI	TGGCCA	1 cut(s)	439
MlyI	GAGTC	2 cut(s)	65, 1147
MmeI	TCCRAC	2 cut(s)	99, 802
Mox20I	TGGCCA	1 cut(s)	439
Mph1103I	ATGCAT	2 cut(s)	533, 626
MscI	TGGCCA	1 cut(s)	439
MseI	TTAA	4 cut(s)	492, 851, 999, 1311
MslI	CAYNNNNRTG	4 cut(s)	550, 659, 674, 1088
Msp20I	TGGCCA	1 cut(s)	439
MspCI	CTTAAG	1 cut(s)	1310
MspI	CCGG	1 cut(s)	462
MspR9I	CCNGG	4 cut(s)	99, 363, 441, 462
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	3 cut(s)	99, 363, 441
MwoI	GCNNNNNNNGC	6 cut(s)	61, 156, 282, 561, 570, 1112
NciI	CCSGG	1 cut(s)	462
NcoI	CCATGG	1 cut(s)	608
NdeII	GATC	7 cut(s)	225, 358, 510, 595, 971, 1120, 1201
NlaIII	CATG	8 cut(s)	19, 531, 535, 612, 658, 679, 1054, 1271
NlaIV	GGNNCC	2 cut(s)	174, 1177
NmuCI	GTSAC	1 cut(s)	768
NsiI	ATGCAT	2 cut(s)	533, 626
NspI	RCATGY	2 cut(s)	531, 535
PaeI	GCATGC	1 cut(s)	535
PctI	GAATGC	1 cut(s)	64
PfeI	GAWTC	5 cut(s)	179, 645, 837, 1007, 1063
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	3 cut(s)	811, 1114, 1249
PleI	GAGTC	2 cut(s)	65, 1146
PpsI	GAGTC	2 cut(s)	65, 1146
Psp124BI	GAGCTC	1 cut(s)	1226
Psp6I	CCWGG	3 cut(s)	97, 361, 439
PspEI	GGTNACC	1 cut(s)	768
PspFI	CCCAGC	2 cut(s)	705, 1179
PspGI	CCWGG	3 cut(s)	97, 361, 439
PspN4I	GGNNCC	2 cut(s)	174, 1177
PspPI	GGNCC	3 cut(s)	101, 173, 455
PsuI	RGATCY	3 cut(s)	358, 971, 1120
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	4 cut(s)	41, 468, 896, 917
RsaNI	GTAC	4 cut(s)	40, 467, 895, 916
RseI	CAYNNNNRTG	4 cut(s)	550, 659, 674, 1088
SacI	GAGCTC	1 cut(s)	1226
SaqAI	TTAA	4 cut(s)	492, 851, 999, 1311
SatI	GCNGC	3 cut(s)	810, 1113, 1248
Sau3AI	GATC	7 cut(s)	225, 358, 510, 595, 971, 1120, 1201
Sau96I	GGNCC	3 cut(s)	101, 173, 455
SchI	GAGTC	2 cut(s)	65, 1147
ScrFI	CCNGG	4 cut(s)	99, 363, 441, 462
SduI	GDGCHC	2 cut(s)	1058, 1226
SfaNI	GCATC	4 cut(s)	121, 394, 542, 721
SinI	GGWCC	2 cut(s)	173, 455
SmiMI	CAYNNNNRTG	4 cut(s)	550, 659, 674, 1088
SmlI	CTYRAG	1 cut(s)	1310
SmoI	CTYRAG	1 cut(s)	1310
SpeI	ACTAGT	1 cut(s)	256
SphI	GCATGC	1 cut(s)	535
Sse9I	AATT	9 cut(s)	84, 162, 266, 637, 789, 852, 880, 963, 1290
SspI	AATATT	1 cut(s)	518
SspMI	CTAG	2 cut(s)	257, 420
SstI	GAGCTC	1 cut(s)	1226
StyD4I	CCNGG	4 cut(s)	97, 361, 439, 460
StyI	CCWWGG	1 cut(s)	608
TaaI	ACNGT	3 cut(s)	80, 202, 581
TaqI	TCGA	3 cut(s)	82, 90, 182
TasI	AATT	9 cut(s)	84, 162, 266, 637, 789, 852, 880, 963, 1290
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	5 cut(s)	179, 645, 837, 1007, 1063
Tru1I	TTAA	4 cut(s)	492, 851, 999, 1311
Tru9I	TTAA	4 cut(s)	492, 851, 999, 1311
TscAI	CASTG	2 cut(s)	228, 838
TseFI	GTSAC	1 cut(s)	768
TseI	GCWGC	3 cut(s)	809, 1112, 1247
Tsp45I	GTSAC	1 cut(s)	768
TspDTI	ATGAA	3 cut(s)	643, 734, 923
TspRI	CASTG	2 cut(s)	228, 838
Tth111I	GACNNNGTC	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	1310
VpaK11BI	GGWCC	2 cut(s)	173, 455
XagI	CCTNNNNNAGG	1 cut(s)	777
XapI	RAATTY	2 cut(s)	880, 963
XceI	RCATGY	2 cut(s)	531, 535
XmiI	GTMKAC	1 cut(s)	1282
XspI	CTAG	2 cut(s)	257, 420
Zsp2I	ATGCAT	2 cut(s)	533, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.